FvH4_3g08750

ethylene-responsive transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0003786
Physical Location & Seq
Forward (+)
5111795 .. 5113428
1634 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g08750.t1

Sequence Viewer

Length: 762 bp
ATGGCGCCGAGAACTGAGAAATCCGCCGCCGTTTCGGCGAAGGGGAATAACAACGTCAAGGAGGTGCATTTCCGGGGAGTGAGGAAGAGGCCGTGGGGGAGATACGCCGCCGAGATCCGGGACCCGGGGAAGAAGAGCCGGGTCTGGCTAGGGACTTTCGACACGGCGGAGGAGGCGGCGAGAGCCTACGACGCCGCCGCCCGGGAGTTCCGCGGCGCCAAGGCCAAGACTAATTTTCCGATCCCGTCGGAGAATGTGAATCTCAGCCTCTTCAAGAAAAAGGTTAATGTTAACAACGGCGGGAATAGCAACAGCCGCAGCCCGAGCCAGAGCAGCACGGTGGAGTCGTCCAGCCGGGAGCCGGCTCTGATGGTTGAGTCCTCGCCGTTGGATCTGAACCTCGGTCACGGCGTCGCCGGATTCGGAGCTCCGATGAGGTTCCCCTTCCAGCACCCCCATCACCAGATTCCGCCGGTCGGAGCCGTCATCGGCGTTCCGACTGCGGCGGCGAATCACGTGCTTTACTTCGACTCGGTGTTCCGGGCAGGGATGGTGAAGAATCACCAGCAGTACCAGCAACAGCTGAGATTCGACCGGAATCTTATGCACCGTGATTTTCTCTCCGGCGGTGGCTTCACCGGCGGTTCACAGAGTGACTCGGACTCGTCCACGGTGGTTGATCTGAACCAGCACGATCTGCCTCGCGCCGGAGGAGGATTCGACCTCGACCTTAACCTGCCGCCTCCGGTGGAACTCGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AP2

Protein Analysis

254

Amino Acids

27.49

Weight (kDa)

9.65

Isoelectric Point (pI)

50.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 23 - 72 3e-15 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 744
AccB1I GGYRCC 2 cut(s) 4, 215
AccII CGCG 2 cut(s) 213, 705
AclWI GGATC 3 cut(s) 109, 235, 399
AcvI CACGTG 1 cut(s) 517
AcyI GRCGYC 4 cut(s) 5, 192, 216, 411
AdeI CACNNNGTG 1 cut(s) 653
AfaI GTAC 1 cut(s) 572
AfiI CCNNNNNNNGG 6 cut(s) 117, 124, 201, 361, 476, 707
AgsI TTSAA 1 cut(s) 274
AluBI AGCT 2 cut(s) 428, 583
AluI AGCT 2 cut(s) 428, 583
Alw21I GWGCWC 1 cut(s) 430
AlwI GGATC 3 cut(s) 109, 235, 399
Ama87I CYCGRG 3 cut(s) 124, 201, 322
AoxI GGCC 2 cut(s) 89, 222
ApeKI GCWGC 2 cut(s) 318, 333
AspLEI GCGC 3 cut(s) 7, 218, 707
AspS9I GGNCC 1 cut(s) 121
AsuC2I CCSGG 9 cut(s) 74, 119, 125, 126, 140, 202, 203, 356, 542
AsuHPI GGTGA 4 cut(s) 452, 554, 565, 628
AvaI CYCGRG 3 cut(s) 124, 201, 322
AvaII GGWCC 1 cut(s) 121
BanI GGYRCC 2 cut(s) 4, 215
BanII GRGCYC 1 cut(s) 430
BbrPI CACGTG 1 cut(s) 517
Bbv12I GWGCWC 1 cut(s) 430
BbvI GCAGC 2 cut(s) 330, 345
BccI CCATC 3 cut(s) 364, 465, 544
BceAI ACGGC 7 cut(s) 14, 76, 180, 313, 370, 424, 467
BcgI CGANNNNNNTGC 2 cut(s) 499, 533
BcnI CCSGG 9 cut(s) 74, 119, 125, 126, 140, 202, 203, 356, 542
BfaI CTAG 1 cut(s) 149
BfoI RGCGCY 2 cut(s) 8, 219
BfuAI ACCTGC 1 cut(s) 744
BglI GCCNNNNNGGC 1 cut(s) 35
Bme1390I CCNGG 9 cut(s) 74, 119, 125, 126, 140, 202, 203, 356, 542
Bme18I GGWCC 1 cut(s) 121
BmeT110I CYCGRG 3 cut(s) 124, 201, 322
BmgT120I GGNCC 1 cut(s) 121
BmiI GGNNCC 7 cut(s) 6, 122, 123, 217, 360, 440, 481
BmrFI CCNGG 9 cut(s) 74, 119, 125, 126, 140, 202, 203, 356, 542
BpuMI CCSGG 9 cut(s) 74, 119, 125, 126, 140, 202, 203, 356, 542
BsaAI YACGTR 1 cut(s) 517
BsaHI GRCGYC 4 cut(s) 5, 192, 216, 411
BsaJI CCNNGG 9 cut(s) 73, 92, 124, 125, 201, 211, 219, 400, 669
BsaWI WCCGGW 2 cut(s) 594, 745
Bsc4I CCNNNNNNNGG 6 cut(s) 117, 124, 201, 361, 476, 707
Bse118I RCCGGY 3 cut(s) 361, 472, 638
BseDI CCNNGG 9 cut(s) 73, 92, 124, 125, 201, 211, 219, 400, 669
BseGI GGATG 1 cut(s) 555
BseLI CCNNNNNNNGG 6 cut(s) 117, 124, 201, 361, 476, 707
BseMII CTCAG 3 cut(s) 6, 277, 575
BseRI GAGGAG 2 cut(s) 185, 726
BseXI GCAGC 2 cut(s) 330, 345
Bsh1236I CGCG 2 cut(s) 213, 705
Bsh1285I CGRYCG 2 cut(s) 477, 595
BshFI GGCC 2 cut(s) 91, 224
BshNI GGYRCC 2 cut(s) 4, 215
BsiEI CGRYCG 2 cut(s) 477, 595
BsiHKAI GWGCWC 1 cut(s) 430
BsiHKCI CYCGRG 3 cut(s) 124, 201, 322
BslFI GGGAC 2 cut(s) 134, 166
BslI CCNNNNNNNGG 6 cut(s) 117, 124, 201, 361, 476, 707
BsmFI GGGAC 2 cut(s) 134, 166
BsnI GGCC 2 cut(s) 91, 224
BsoBI CYCGRG 3 cut(s) 124, 201, 322
Bsp1286I GDGCHC 1 cut(s) 430
Bsp143I GATC 5 cut(s) 114, 240, 391, 679, 694
BspANI GGCC 2 cut(s) 91, 224
BspCNI CTCAG 3 cut(s) 7, 276, 576
BspFNI CGCG 2 cut(s) 213, 705
BspLI GGNNCC 7 cut(s) 6, 122, 123, 217, 360, 440, 481
BspMI ACCTGC 1 cut(s) 744
BspPI GGATC 3 cut(s) 109, 235, 399
BspQI GCTCTTC 1 cut(s) 128
BspT107I GGYRCC 2 cut(s) 4, 215
BsrFI RCCGGY 3 cut(s) 361, 472, 638
BssAI RCCGGY 3 cut(s) 361, 472, 638
BssECI CCNNGG 9 cut(s) 73, 92, 124, 125, 201, 211, 219, 400, 669
BssMI GATC 5 cut(s) 114, 240, 391, 679, 694
BssNI GRCGYC 4 cut(s) 5, 192, 216, 411
BssT1I CCWWGG 1 cut(s) 219
Bst4CI ACNGT 3 cut(s) 340, 611, 673
Bst6I CTCTTC 3 cut(s) 80, 128, 275
BstACI GRCGYC 4 cut(s) 5, 192, 216, 411
BstAPI GCANNNNNTGC 1 cut(s) 697
BstBAI YACGTR 1 cut(s) 517
BstC8I GCNNGC 1 cut(s) 363
BstDEI CTNAG 3 cut(s) 15, 263, 584
BstDSI CCRYGG 3 cut(s) 92, 211, 669
BstF5I GGATG 1 cut(s) 555
BstFNI CGCG 2 cut(s) 213, 705
BstH2I RGCGCY 2 cut(s) 8, 219
BstHHI GCGC 3 cut(s) 7, 218, 707
BstKTI GATC 5 cut(s) 117, 243, 394, 682, 697
BstMBI GATC 5 cut(s) 114, 240, 391, 679, 694
BstMCI CGRYCG 2 cut(s) 477, 595
BstSCI CCNGG 9 cut(s) 72, 117, 123, 124, 138, 200, 201, 354, 540
BstUI CGCG 2 cut(s) 213, 705
BstV1I GCAGC 2 cut(s) 330, 345
BstX2I RGATCY 2 cut(s) 114, 391
BstYI RGATCY 2 cut(s) 114, 391
BsuRI GGCC 2 cut(s) 91, 224
BtgI CCRYGG 3 cut(s) 92, 211, 669
BtsCI GGATG 1 cut(s) 555
BveI ACCTGC 1 cut(s) 744
Cac8I GCNNGC 1 cut(s) 363
CfoI GCGC 3 cut(s) 7, 218, 707
Cfr10I RCCGGY 3 cut(s) 361, 472, 638
Cfr13I GGNCC 1 cut(s) 121
Cfr42I CCGCGG 1 cut(s) 214
Cfr9I CCCGGG 2 cut(s) 124, 201
CseI GACGC 2 cut(s) 200, 400
Csp6I GTAC 1 cut(s) 571
CspCI CAANNNNNGTGG 2 cut(s) 658, 693
CviQI GTAC 1 cut(s) 571
DdeI CTNAG 3 cut(s) 15, 263, 584
DinI GGCGCC 2 cut(s) 6, 217
DpnI GATC 5 cut(s) 116, 242, 393, 681, 696
DpnII GATC 5 cut(s) 114, 240, 391, 679, 694
DraIII CACNNNGTG 1 cut(s) 653
Eam1104I CTCTTC 3 cut(s) 80, 128, 275
EarI CTCTTC 3 cut(s) 80, 128, 275
EciI GGCGGA 3 cut(s) 13, 182, 459
Ecl136II GAGCTC 1 cut(s) 428
Eco130I CCWWGG 1 cut(s) 219
Eco24I GRGCYC 1 cut(s) 430
Eco47I GGWCC 1 cut(s) 121
Eco53kI GAGCTC 1 cut(s) 428
Eco72I CACGTG 1 cut(s) 517
Eco88I CYCGRG 3 cut(s) 124, 201, 322
EcoICRI GAGCTC 1 cut(s) 428
EcoO109I RGGNCCY 1 cut(s) 121
EcoT14I CCWWGG 1 cut(s) 219
EcoT38I GRGCYC 1 cut(s) 430
EgeI GGCGCC 2 cut(s) 6, 217
EheI GGCGCC 2 cut(s) 6, 217
ErhI CCWWGG 1 cut(s) 219
FaiI YATR 1 cut(s) 605
FaqI GGGAC 2 cut(s) 134, 166
FauI CCCGC 1 cut(s) 293
FokI GGATG 1 cut(s) 562
FriOI GRGCYC 1 cut(s) 430
FspBI CTAG 1 cut(s) 149
GlaI GCGC 3 cut(s) 6, 217, 706
HaeII RGCGCY 2 cut(s) 8, 219
HaeIII GGCC 2 cut(s) 91, 224
HgaI GACGC 2 cut(s) 200, 400
HhaI GCGC 3 cut(s) 7, 218, 707
Hin1I GRCGYC 4 cut(s) 5, 192, 216, 411
Hin6I GCGC 3 cut(s) 5, 216, 705
HinP1I GCGC 3 cut(s) 5, 216, 705
HincII GTYRAC 1 cut(s) 292
HindII GTYRAC 1 cut(s) 292
HpaI GTTAAC 1 cut(s) 292
HphI GGTGA 4 cut(s) 452, 554, 565, 628
Hpy166II GTNNAC 3 cut(s) 292, 647, 669
Hpy188III TCNNGA 1 cut(s) 274
Hpy8I GTNNAC 3 cut(s) 292, 647, 669
Hpy99I CGWCG 3 cut(s) 194, 250, 416
HpyAV CCTTC 2 cut(s) 34, 454
HpyCH4III ACNGT 3 cut(s) 340, 611, 673
HpyCH4IV ACGT 2 cut(s) 54, 516
HpyCH4V TGCA 2 cut(s) 67, 607
HpyF3I CTNAG 3 cut(s) 15, 263, 584
HpySE526I ACGT 2 cut(s) 54, 516
Hsp92I GRCGYC 4 cut(s) 5, 192, 216, 411
HspAI GCGC 3 cut(s) 5, 216, 705
KasI GGCGCC 2 cut(s) 4, 215
KflI GGGWCCC 1 cut(s) 121
KroI GCCGGC 1 cut(s) 361
KroNI GCCGGC 1 cut(s) 363
KspAI GTTAAC 1 cut(s) 292
KspI CCGCGG 1 cut(s) 214
Kzo9I GATC 5 cut(s) 114, 240, 391, 679, 694
LguI GCTCTTC 1 cut(s) 128
LmnI GCTCC 4 cut(s) 358, 425, 433, 479
Lsp1109I GCAGC 2 cut(s) 330, 345
MaeI CTAG 1 cut(s) 149
MaeII ACGT 2 cut(s) 54, 516
MaeIII GTNAC 2 cut(s) 404, 653
MalI GATC 5 cut(s) 116, 242, 393, 681, 696
MboI GATC 5 cut(s) 114, 240, 391, 679, 694
MboII GAAGA 5 cut(s) 97, 142, 145, 262, 568
MflI RGATCY 2 cut(s) 114, 391
MhlI GDGCHC 1 cut(s) 430
MluCI AATT 1 cut(s) 232
Mly113I GGCGCC 2 cut(s) 5, 216
MlyI GAGTC 5 cut(s) 353, 386, 524, 650, 656
MmeI TCCRAC 4 cut(s) 228, 369, 457, 521
MroNI GCCGGC 1 cut(s) 361
MseI TTAA 3 cut(s) 285, 291, 732
MspA1I CMGCKG 2 cut(s) 213, 583
MspR9I CCNGG 9 cut(s) 74, 119, 125, 126, 140, 202, 203, 356, 542
MvnI CGCG 2 cut(s) 213, 705
NaeI GCCGGC 1 cut(s) 363
NarI GGCGCC 2 cut(s) 5, 216
NciI CCSGG 9 cut(s) 74, 119, 125, 126, 140, 202, 203, 356, 542
NdeII GATC 5 cut(s) 114, 240, 391, 679, 694
NgoMIV GCCGGC 1 cut(s) 361
NlaIV GGNNCC 7 cut(s) 6, 122, 123, 217, 360, 440, 481
NmeAIII GCCGAG 2 cut(s) 33, 136
NmuCI GTSAC 2 cut(s) 404, 653
PciSI GCTCTTC 1 cut(s) 128
PcsI WCGNNNNNNNCGW 2 cut(s) 344, 408
PdiI GCCGGC 1 cut(s) 363
PfeI GAWTC 8 cut(s) 259, 420, 466, 511, 559, 588, 598, 717
PfoI TCCNGGA 1 cut(s) 117
PleI GAGTC 5 cut(s) 352, 385, 524, 650, 656
PluTI GGCGCC 2 cut(s) 8, 219
PmaCI CACGTG 1 cut(s) 517
PmlI CACGTG 1 cut(s) 517
PpsI GAGTC 5 cut(s) 352, 385, 524, 650, 656
Ppu21I YACGTR 1 cut(s) 517
PpuMI RGGWCCY 1 cut(s) 121
Psp124BI GAGCTC 1 cut(s) 430
Psp5II RGGWCCY 1 cut(s) 121
PspCI CACGTG 1 cut(s) 517
PspN4I GGNNCC 7 cut(s) 6, 122, 123, 217, 360, 440, 481
PspPI GGNCC 1 cut(s) 121
PspPPI RGGWCCY 1 cut(s) 121
PsuI RGATCY 2 cut(s) 114, 391
PvuII CAGCTG 1 cut(s) 583
RsaI GTAC 1 cut(s) 572
RsaNI GTAC 1 cut(s) 571
SacI GAGCTC 1 cut(s) 430
SacII CCGCGG 1 cut(s) 214
SapI GCTCTTC 1 cut(s) 128
SaqAI TTAA 3 cut(s) 285, 291, 732
Sau3AI GATC 5 cut(s) 114, 240, 391, 679, 694
Sau96I GGNCC 1 cut(s) 121
SchI GAGTC 5 cut(s) 353, 386, 524, 650, 656
ScrFI CCNGG 9 cut(s) 74, 119, 125, 126, 140, 202, 203, 356, 542
SduI GDGCHC 1 cut(s) 430
SfoI GGCGCC 2 cut(s) 6, 217
Sfr303I CCGCGG 1 cut(s) 214
SgrAI CRCCGGYG 1 cut(s) 638
SgrBI CCGCGG 1 cut(s) 214
SinI GGWCC 1 cut(s) 121
SmaI CCCGGG 2 cut(s) 126, 203
Sse9I AATT 1 cut(s) 232
SspDI GGCGCC 2 cut(s) 4, 215
SspMI CTAG 1 cut(s) 149
SstI GAGCTC 1 cut(s) 430
StyD4I CCNGG 9 cut(s) 72, 117, 123, 124, 138, 200, 201, 354, 540
StyI CCWWGG 1 cut(s) 219
TaaI ACNGT 3 cut(s) 340, 611, 673
TaiI ACGT 2 cut(s) 57, 519
TaqI TCGA 5 cut(s) 159, 528, 591, 720, 726
TaqII GACCGA 1 cut(s) 392
TasI AATT 1 cut(s) 232
TfiI GAWTC 8 cut(s) 259, 420, 466, 511, 559, 588, 598, 717
Tru1I TTAA 3 cut(s) 285, 291, 732
Tru9I TTAA 3 cut(s) 285, 291, 732
TseFI GTSAC 2 cut(s) 404, 653
TseI GCWGC 2 cut(s) 318, 333
Tsp45I GTSAC 2 cut(s) 404, 653
TspMI CCCGGG 2 cut(s) 124, 201
VpaK11BI GGWCC 1 cut(s) 121
XmaI CCCGGG 2 cut(s) 124, 201
XspI CTAG 1 cut(s) 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.