RLG00000033420

ethylene-responsive transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0003786
Physical Location & Seq
Forward (+)
26966130 .. 26966885
756 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033420

Sequence Viewer

Length: 756 bp
ATGGCTCCGAAAGCGGCAGCAAAATCCGGCTCCGGCACCCAGAACCCGAAGCCGAACTCGCTCGAGATCCGTTATCGAGGCGTCAGGAAGAGGCCTTGGGGTCGCTACGCTGCCGAGATCAGGGATCCTGGCAAGAAGACGAGGGTCTGGCTCGGCACGTTCGATACGGCTGAGGAGGCGGCGCGTGCGTACGACAAGGCGGCGCGGGAGTACCGTGGAGCTAAGGCAAAGACCAACTTCCCAACGCCGGCCGAGCTTCAAGCGAACAGCAACAACCGCGGCAACAATAACAGCGGCGGTAGACAGAACCATCATTCCCCGCCCGCGGCTCAGGCGCGCAGCCCCAGCCAGACCAGCACCGTGGACTCCTCGTCCCCGCCGGCGCCGGCGCCTCCGGTCCTGGACCTCACCCTGGCAGCTCCCCGTTTCGCGGCGGCGGCCGCCAGCGCGGGCTACTTCACCGCCGCGAGTGCCTACCACGCGCTCCCACTCGGGCGTCCCATCTTTTTCTTCGACGCGTTCGCCAGGACCGACAACGTGGTGACGACGTCGGGGGGTCTCCATCGCCCCCTCGCCGCCCGCGAAATGGGCAAACTTGACAAAAGCGTCAAGGCAGCCACCTCGCCGTCCGGCGGTTCCCACTCCGGCCTCAGCGACTCGGACTCCTCCACCGTCGTGGATTTCGCTCACTCCCCCGCCAAGAAAGGACCGCTTGATCTCGACCTCAACCTCCCCCCTCCACCGGAGAAAGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000160 GO:0001101 GO:0002218 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009682 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009753 GO:0009755 GO:0009864 GO:0009867 GO:0009873 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010104 GO:0010105 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010646 GO:0010648 GO:0016604 GO:0019219 GO:0019222 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0031349 GO:0031974 GO:0031981 GO:0032870 GO:0033993 GO:0035556 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0045892 GO:0045934 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070297 GO:0070298 GO:0070887 GO:0071229 GO:0071310 GO:0071369 GO:0071395 GO:0071495 GO:0080090 GO:0080134 GO:0097159 GO:0097305 GO:0098542 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1901701 GO:1902531 GO:1902532 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AP2

Protein Analysis

252

Amino Acids

26.38

Weight (kDa)

10.03

Isoelectric Point (pI)

45.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 24 - 73 1.9e-15 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 605
AatII GACGTC 1 cut(s) 551
AccB1I GGYRCC 3 cut(s) 35, 382, 388
AccI GTMKAC 1 cut(s) 301
AclWI GGATC 3 cut(s) 61, 119, 132
AcoI YGGCCR 2 cut(s) 249, 438
AcyI GRCGYC 5 cut(s) 81, 383, 389, 496, 548
AfaI GTAC 2 cut(s) 191, 212
AfiI CCNNNNNNNGG 8 cut(s) 120, 247, 325, 412, 430, 586, 632, 742
AflIII ACRYGT 1 cut(s) 516
AgsI TTSAA 1 cut(s) 260
AhdI GACNNNNNGTC 1 cut(s) 370
AjnI CCWGG 4 cut(s) 127, 399, 411, 524
AleI CACNNNNGTG 1 cut(s) 674
AloI GAACNNNNNNTCC 2 cut(s) 299, 331
AluBI AGCT 3 cut(s) 221, 256, 419
AluI AGCT 3 cut(s) 221, 256, 419
Alw26I GTCTC 1 cut(s) 563
AlwI GGATC 3 cut(s) 61, 119, 132
Ama87I CYCGRG 2 cut(s) 62, 491
AoxI GGCC 4 cut(s) 92, 249, 438, 646
ApeKI GCWGC 5 cut(s) 17, 110, 339, 416, 614
AspLEI GCGC 8 cut(s) 184, 205, 337, 339, 385, 391, 449, 484
AspS9I GGNCC 4 cut(s) 397, 403, 528, 707
AsuHPI GGTGA 3 cut(s) 400, 451, 553
AvaI CYCGRG 2 cut(s) 62, 491
AvaII GGWCC 4 cut(s) 397, 403, 528, 707
BamHI GGATCC 1 cut(s) 124
BanI GGYRCC 3 cut(s) 35, 382, 388
BbsI GAAGAC 1 cut(s) 143
BbvCI CCTCAGC 2 cut(s) 171, 650
BbvI GCAGC 5 cut(s) 29, 97, 351, 428, 626
BccI CCATC 3 cut(s) 318, 509, 570
BceAI ACGGC 2 cut(s) 183, 610
BcgI CGANNNNNNTGC 2 cut(s) 603, 637
BciT130I CCWGG 4 cut(s) 129, 401, 413, 526
BcoDI GTCTC 1 cut(s) 563
BfoI RGCGCY 2 cut(s) 386, 392
Bme1390I CCNGG 4 cut(s) 129, 401, 413, 526
Bme18I GGWCC 4 cut(s) 397, 403, 528, 707
BmeRI GACNNNNNGTC 1 cut(s) 370
BmeT110I CYCGRG 2 cut(s) 62, 491
BmgT120I GGNCC 4 cut(s) 397, 403, 528, 707
BmiI GGNNCC 7 cut(s) 6, 31, 37, 126, 384, 390, 637
BmrFI CCNGG 4 cut(s) 129, 401, 413, 526
BoxI GACNNNNGTC 1 cut(s) 143
BpiI GAAGAC 1 cut(s) 143
Bpu10I CCTNAGC 4 cut(s) 171, 222, 330, 650
BsaHI GRCGYC 5 cut(s) 81, 383, 389, 496, 548
BsaI GGTCTC 1 cut(s) 563
BsaJI CCNNGG 6 cut(s) 95, 214, 277, 324, 360, 411
BsaWI WCCGGW 2 cut(s) 394, 742
BsaXI ACNNNNNCTCC 2 cut(s) 647, 677
Bsc4I CCNNNNNNNGG 8 cut(s) 120, 247, 325, 412, 430, 586, 632, 742
Bse118I RCCGGY 3 cut(s) 247, 379, 385
BseBI CCWGG 4 cut(s) 129, 401, 413, 526
BseDI CCNNGG 6 cut(s) 95, 214, 277, 324, 360, 411
BseLI CCNNNNNNNGG 8 cut(s) 120, 247, 325, 412, 430, 586, 632, 742
BseMII CTCAG 3 cut(s) 162, 344, 664
BsePI GCGCGC 1 cut(s) 335
BseRI GAGGAG 3 cut(s) 188, 358, 655
BseX3I CGGCCG 2 cut(s) 249, 438
BseXI GCAGC 5 cut(s) 29, 97, 351, 428, 626
BseYI CCCAGC 1 cut(s) 344
Bsh1285I CGRYCG 2 cut(s) 252, 441
BshFI GGCC 4 cut(s) 94, 251, 440, 648
BshNI GGYRCC 3 cut(s) 35, 382, 388
BsiEI CGRYCG 2 cut(s) 252, 441
BsiHKCI CYCGRG 2 cut(s) 62, 491
BsiSI CCGG 9 cut(s) 27, 33, 248, 380, 386, 395, 630, 645, 743
BsiWI CGTACG 1 cut(s) 189
BslFI GGGAC 2 cut(s) 358, 483
BslI CCNNNNNNNGG 8 cut(s) 120, 247, 325, 412, 430, 586, 632, 742
BsmAI GTCTC 1 cut(s) 563
BsmFI GGGAC 2 cut(s) 358, 483
BsnI GGCC 4 cut(s) 94, 251, 440, 648
Bso31I GGTCTC 1 cut(s) 563
BsoBI CYCGRG 2 cut(s) 62, 491
Bsp143I GATC 4 cut(s) 66, 117, 124, 715
BspANI GGCC 4 cut(s) 94, 251, 440, 648
BspCNI CTCAG 3 cut(s) 163, 343, 663
BspLI GGNNCC 7 cut(s) 6, 31, 37, 126, 384, 390, 637
BspPI GGATC 3 cut(s) 61, 119, 132
BspT107I GGYRCC 3 cut(s) 35, 382, 388
BspTNI GGTCTC 1 cut(s) 563
BsrFI RCCGGY 3 cut(s) 247, 379, 385
BssAI RCCGGY 3 cut(s) 247, 379, 385
BssECI CCNNGG 6 cut(s) 95, 214, 277, 324, 360, 411
BssHII GCGCGC 1 cut(s) 335
BssMI GATC 4 cut(s) 66, 117, 124, 715
BssNI GRCGYC 5 cut(s) 81, 383, 389, 496, 548
BssT1I CCWWGG 1 cut(s) 95
Bst2UI CCWGG 4 cut(s) 129, 401, 413, 526
Bst4CI ACNGT 3 cut(s) 215, 361, 673
Bst6I CTCTTC 1 cut(s) 83
BstACI GRCGYC 5 cut(s) 81, 383, 389, 496, 548
BstC8I GCNNGC 9 cut(s) 186, 249, 324, 337, 381, 387, 445, 451, 580
BstDEI CTNAG 4 cut(s) 171, 222, 330, 650
BstDSI CCRYGG 4 cut(s) 214, 277, 324, 360
BstH2I RGCGCY 2 cut(s) 386, 392
BstHHI GCGC 8 cut(s) 184, 205, 337, 339, 385, 391, 449, 484
BstKTI GATC 4 cut(s) 69, 120, 127, 718
BstMAI GTCTC 1 cut(s) 563
BstMBI GATC 4 cut(s) 66, 117, 124, 715
BstMCI CGRYCG 2 cut(s) 252, 441
BstNI CCWGG 4 cut(s) 129, 401, 413, 526
BstPAI GACNNNNGTC 1 cut(s) 143
BstSCI CCNGG 4 cut(s) 127, 399, 411, 524
BstV1I GCAGC 5 cut(s) 29, 97, 351, 428, 626
BstV2I GAAGAC 1 cut(s) 143
BstX2I RGATCY 2 cut(s) 66, 124
BstXI CCANNNNNNTGG 2 cut(s) 361, 676
BstYI RGATCY 2 cut(s) 66, 124
BstZI CGGCCG 2 cut(s) 249, 438
BsuRI GGCC 4 cut(s) 94, 251, 440, 648
BtgI CCRYGG 4 cut(s) 214, 277, 324, 360
BtgZI GCGATG 1 cut(s) 548
Cac8I GCNNGC 9 cut(s) 186, 249, 324, 337, 381, 387, 445, 451, 580
CciNI GCGGCCGC 1 cut(s) 438
CfoI GCGC 8 cut(s) 184, 205, 337, 339, 385, 391, 449, 484
Cfr10I RCCGGY 3 cut(s) 247, 379, 385
Cfr13I GGNCC 4 cut(s) 397, 403, 528, 707
Cfr42I CCGCGG 2 cut(s) 280, 327
CseI GACGC 4 cut(s) 70, 485, 524, 595
Csp6I GTAC 2 cut(s) 190, 211
CviQI GTAC 2 cut(s) 190, 211
DdeI CTNAG 4 cut(s) 171, 222, 330, 650
DinI GGCGCC 2 cut(s) 384, 390
DpnI GATC 4 cut(s) 68, 119, 126, 717
DpnII GATC 4 cut(s) 66, 117, 124, 715
DrdI GACNNNNNNGTC 1 cut(s) 605
DriI GACNNNNNGTC 1 cut(s) 370
DseDI GACNNNNNNGTC 1 cut(s) 605
EaeI YGGCCR 2 cut(s) 249, 438
EagI CGGCCG 2 cut(s) 249, 438
Eam1104I CTCTTC 1 cut(s) 83
Eam1105I GACNNNNNGTC 1 cut(s) 370
EarI CTCTTC 1 cut(s) 83
EclXI CGGCCG 2 cut(s) 249, 438
Eco130I CCWWGG 1 cut(s) 95
Eco147I AGGCCT 1 cut(s) 94
Eco31I GGTCTC 1 cut(s) 563
Eco47I GGWCC 4 cut(s) 397, 403, 528, 707
Eco52I CGGCCG 2 cut(s) 249, 438
Eco88I CYCGRG 2 cut(s) 62, 491
EcoRII CCWGG 4 cut(s) 127, 399, 411, 524
EcoT14I CCWWGG 1 cut(s) 95
EgeI GGCGCC 2 cut(s) 384, 390
EheI GGCGCC 2 cut(s) 384, 390
ErhI CCWWGG 1 cut(s) 95
FalI AAGNNNNNCTT 4 cut(s) 221, 253, 696, 728
FaqI GGGAC 2 cut(s) 358, 483
FauI CCCGC 7 cut(s) 198, 327, 331, 384, 442, 587, 703
FblI GTMKAC 1 cut(s) 301
GlaI GCGC 8 cut(s) 183, 204, 336, 338, 384, 390, 448, 483
GsaI CCCAGC 1 cut(s) 348
HaeII RGCGCY 2 cut(s) 386, 392
HaeIII GGCC 4 cut(s) 94, 251, 440, 648
HapII CCGG 9 cut(s) 27, 33, 248, 380, 386, 395, 630, 645, 743
HgaI GACGC 4 cut(s) 70, 485, 524, 595
HhaI GCGC 8 cut(s) 184, 205, 337, 339, 385, 391, 449, 484
Hin1I GRCGYC 5 cut(s) 81, 383, 389, 496, 548
Hin6I GCGC 8 cut(s) 182, 203, 335, 337, 383, 389, 447, 482
HinP1I GCGC 8 cut(s) 182, 203, 335, 337, 383, 389, 447, 482
HinfI GANTC 3 cut(s) 365, 656, 662
HpaII CCGG 9 cut(s) 27, 33, 248, 380, 386, 395, 630, 645, 743
HphI GGTGA 3 cut(s) 400, 451, 553
Hpy166II GTNNAC 2 cut(s) 302, 364
Hpy188I TCNGA 2 cut(s) 9, 661
Hpy188III TCNNGA 3 cut(s) 64, 85, 719
Hpy8I GTNNAC 2 cut(s) 302, 364
Hpy99I CGWCG 4 cut(s) 518, 550, 553, 677
HpyCH4III ACNGT 3 cut(s) 215, 361, 673
HpyCH4IV ACGT 3 cut(s) 158, 537, 548
HpyF3I CTNAG 4 cut(s) 171, 222, 330, 650
HpySE526I ACGT 3 cut(s) 158, 537, 548
Hsp92I GRCGYC 5 cut(s) 81, 383, 389, 496, 548
HspAI GCGC 8 cut(s) 182, 203, 335, 337, 383, 389, 447, 482
KasI GGCGCC 2 cut(s) 382, 388
KroI GCCGGC 3 cut(s) 247, 379, 385
KroNI GCCGGC 3 cut(s) 249, 381, 387
KspI CCGCGG 2 cut(s) 280, 327
Kzo9I GATC 4 cut(s) 66, 117, 124, 715
LmnI GCTCC 5 cut(s) 10, 35, 218, 424, 489
Lsp1109I GCAGC 5 cut(s) 29, 97, 351, 428, 626
MaeII ACGT 3 cut(s) 158, 537, 548
MaeIII GTNAC 1 cut(s) 541
MalI GATC 4 cut(s) 68, 119, 126, 717
MboI GATC 4 cut(s) 66, 117, 124, 715
MboII GAAGA 3 cut(s) 100, 148, 502
MflI RGATCY 2 cut(s) 66, 124
MluI ACGCGT 1 cut(s) 516
Mly113I GGCGCC 2 cut(s) 383, 389
MlyI GAGTC 3 cut(s) 359, 650, 656
MreI CGCCGGCG 2 cut(s) 379, 385
MroNI GCCGGC 3 cut(s) 247, 379, 385
MslI CAYNNNNRTG 1 cut(s) 674
MspA1I CMGCKG 3 cut(s) 279, 294, 326
MspI CCGG 9 cut(s) 27, 33, 248, 380, 386, 395, 630, 645, 743
MspR9I CCNGG 4 cut(s) 129, 401, 413, 526
MvaI CCWGG 4 cut(s) 129, 401, 413, 526
NaeI GCCGGC 3 cut(s) 249, 381, 387
NarI GGCGCC 2 cut(s) 383, 389
NdeII GATC 4 cut(s) 66, 117, 124, 715
NgoMIV GCCGGC 3 cut(s) 247, 379, 385
NlaIV GGNNCC 7 cut(s) 6, 31, 37, 126, 384, 390, 637
NmeAIII GCCGAG 3 cut(s) 132, 139, 277
NmuCI GTSAC 1 cut(s) 541
NotI GCGGCCGC 1 cut(s) 438
OliI CACNNNNGTG 1 cut(s) 674
PaeR7I CTCGAG 1 cut(s) 62
PauI GCGCGC 1 cut(s) 335
PceI AGGCCT 1 cut(s) 94
PcsI WCGNNNNNNNCGW 3 cut(s) 159, 528, 579
PdiI GCCGGC 3 cut(s) 249, 381, 387
Pfl23II CGTACG 1 cut(s) 189
PflFI GACNNNGTC 1 cut(s) 547
PfoI TCCNGGA 1 cut(s) 399
PleI GAGTC 3 cut(s) 359, 650, 656
PluTI GGCGCC 2 cut(s) 386, 392
PpsI GAGTC 3 cut(s) 359, 650, 656
PshAI GACNNNNGTC 1 cut(s) 143
Psp6I CCWGG 4 cut(s) 127, 399, 411, 524
PspFI CCCAGC 1 cut(s) 344
PspGI CCWGG 4 cut(s) 127, 399, 411, 524
PspLI CGTACG 1 cut(s) 189
PspN4I GGNNCC 7 cut(s) 6, 31, 37, 126, 384, 390, 637
PspPI GGNCC 4 cut(s) 397, 403, 528, 707
PsuI RGATCY 2 cut(s) 66, 124
PsyI GACNNNGTC 1 cut(s) 547
PteI GCGCGC 1 cut(s) 335
RsaI GTAC 2 cut(s) 191, 212
RsaNI GTAC 2 cut(s) 190, 211
RseI CAYNNNNRTG 1 cut(s) 674
SacII CCGCGG 2 cut(s) 280, 327
Sau3AI GATC 4 cut(s) 66, 117, 124, 715
Sau96I GGNCC 4 cut(s) 397, 403, 528, 707
SchI GAGTC 3 cut(s) 359, 650, 656
ScrFI CCNGG 4 cut(s) 129, 401, 413, 526
SfoI GGCGCC 2 cut(s) 384, 390
Sfr274I CTCGAG 1 cut(s) 62
Sfr303I CCGCGG 2 cut(s) 280, 327
SgrAI CRCCGGYG 2 cut(s) 379, 385
SgrBI CCGCGG 2 cut(s) 280, 327
SinI GGWCC 4 cut(s) 397, 403, 528, 707
SlaI CTCGAG 1 cut(s) 62
SmiMI CAYNNNNRTG 1 cut(s) 674
SmlI CTYRAG 1 cut(s) 62
SmoI CTYRAG 1 cut(s) 62
SseBI AGGCCT 1 cut(s) 94
SspDI GGCGCC 2 cut(s) 382, 388
StuI AGGCCT 1 cut(s) 94
StyD4I CCNGG 4 cut(s) 127, 399, 411, 524
StyI CCWWGG 1 cut(s) 95
TaaI ACNGT 3 cut(s) 215, 361, 673
TaiI ACGT 3 cut(s) 161, 540, 551
TaqI TCGA 5 cut(s) 63, 76, 162, 513, 720
TaqII GACCGA 1 cut(s) 545
TseFI GTSAC 1 cut(s) 541
TseI GCWGC 5 cut(s) 17, 110, 339, 416, 614
Tsp45I GTSAC 1 cut(s) 541
TspGWI ACGGA 1 cut(s) 59
Tth111I GACNNNGTC 1 cut(s) 547
VpaK11BI GGWCC 4 cut(s) 397, 403, 528, 707
XhoI CTCGAG 1 cut(s) 62
XmiI GTMKAC 1 cut(s) 301
ZraI GACGTC 1 cut(s) 549
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.