Rh5AG069700

ethylene-responsive transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0003786
Physical Location & Seq
Reverse (-)
5886137 .. 5887385
1249 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG069700.1

Sequence Viewer

Length: 789 bp
ATGGCACCGAGAACCGAGAAAACCGCCACCACGGCTAAACCTAACGGCAACGTGAAGGAGGTGCATTTTAGGGGAGTGAGGAAGAGGCCGTGGGGGAGGTACGCGGCGGAGATTCGGGACCCGGGGAAGAAGAGCCGGGTCTGGCTCGGGACCTTCGACACGGCGGAGGAGGCGGCCAAAGCATACGACACCGCGGCGCGGGAGTTCCGTGGCGCCAAGGCCAAGACAAACTTCCCGCTGCCGTCGGAGAATGTGAATCTCAGTCTCTTCAAGAAAAATGTTGGGAGTAATAATATAAATAACAACAACAACAACGGCGGCGGAAATAGCAACAGCCACAGCCCCAGCCAGAGCAGCACGGTGGAGTCGTCCAGCCGGGAGCCGGCTATGATGGTCGAGTCCTCCTCGCCGTTGGATCTGAACCTAGCTCACGGCGTCAGTAGCGGCCACGCCGGATTCGGAGCTCCGATGAGGTTTCCCTTCCAGCACCACCAGATTCCGGCGATCGGAGCCGTCATCGGCGTTCCGACTTCGGCCGCGAATCACGTGCTCTACTTCGACTCGGTGTTCCGGGCCGGGATGGTGAAGAATCACCAGCAGTACCAGCAACAGCTGAGGTTCGACCGGAATCTCATCCACCGTGATTTTCTCTCCGGCGGTGGCTTCACCGGCGGGTCGCAGAGTGACTCGGATTCGTCCACCGTCGTTGATCTGAACCACCACGATCAGCCTCGTGGAGGAGGATTCGACCTCGACTTAAACCTGCCGCCTCCGGCGGAACTCGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AP2

Protein Analysis

262

Amino Acids

28.38

Weight (kDa)

9.36

Isoelectric Point (pI)

47.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 22 - 71 1e-14 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 771
AccB1I GGYRCC 2 cut(s) 4, 212
AccII CGCG 4 cut(s) 104, 194, 199, 539
AclWI GGATC 1 cut(s) 423
AcoI YGGCCR 3 cut(s) 174, 445, 534
AcvI CACGTG 1 cut(s) 547
AcyI GRCGYC 2 cut(s) 213, 435
AfaI GTAC 2 cut(s) 101, 602
AfiI CCNNNNNNNGG 5 cut(s) 198, 382, 499, 506, 737
AgsI TTSAA 1 cut(s) 271
AjuI GAANNNNNNNTTGG 2 cut(s) 215, 247
AluBI AGCT 3 cut(s) 428, 464, 613
AluI AGCT 3 cut(s) 428, 464, 613
Alw21I GWGCWC 2 cut(s) 466, 552
Alw26I GTCTC 1 cut(s) 269
AlwI GGATC 1 cut(s) 423
Ama87I CYCGRG 2 cut(s) 121, 146
AoxI GGCC 6 cut(s) 86, 174, 219, 445, 534, 573
ApeKI GCWGC 2 cut(s) 238, 354
AspLEI GCGC 2 cut(s) 199, 215
AspS9I GGNCC 3 cut(s) 118, 150, 573
AsuC2I CCSGG 6 cut(s) 122, 123, 137, 377, 572, 577
AsuHPI GGTGA 3 cut(s) 584, 595, 658
AvaI CYCGRG 2 cut(s) 121, 146
AvaII GGWCC 2 cut(s) 118, 150
BanI GGYRCC 2 cut(s) 4, 212
BanII GRGCYC 1 cut(s) 466
BauI CACGAG 1 cut(s) 732
BbrPI CACGTG 1 cut(s) 547
Bbv12I GWGCWC 2 cut(s) 466, 552
BbvCI CCTCAGC 1 cut(s) 614
BbvI GCAGC 2 cut(s) 225, 366
BccI CCATC 2 cut(s) 385, 574
BceAI ACGGC 9 cut(s) 48, 61, 73, 177, 226, 331, 394, 448, 497
BcgI CGANNNNNNTGC 2 cut(s) 529, 563
BcnI CCSGG 6 cut(s) 122, 123, 137, 377, 572, 577
BcoDI GTCTC 1 cut(s) 269
BfaI CTAG 1 cut(s) 425
BfoI RGCGCY 1 cut(s) 216
BfuAI ACCTGC 1 cut(s) 771
BglI GCCNNNNNGGC 1 cut(s) 32
BisI GCNGC 9 cut(s) 105, 174, 195, 239, 319, 355, 445, 537, 767
BlsI GCNGC 9 cut(s) 106, 175, 196, 240, 320, 356, 446, 538, 768
Bme1390I CCNGG 6 cut(s) 122, 123, 137, 377, 572, 577
Bme18I GGWCC 2 cut(s) 118, 150
BmeT110I CYCGRG 2 cut(s) 121, 146
BmgT120I GGNCC 3 cut(s) 118, 150, 573
BmiI GGNNCC 7 cut(s) 6, 119, 120, 151, 214, 381, 511
BmrFI CCNGG 6 cut(s) 122, 123, 137, 377, 572, 577
BplI GAGNNNNNCTC 2 cut(s) 389, 421
Bpu10I CCTNAGC 1 cut(s) 614
BpuMI CCSGG 6 cut(s) 122, 123, 137, 377, 572, 577
BsaAI YACGTR 1 cut(s) 547
BsaHI GRCGYC 2 cut(s) 213, 435
BsaJI CCNNGG 7 cut(s) 30, 89, 121, 122, 192, 208, 216
BsaWI WCCGGW 1 cut(s) 624
Bsc4I CCNNNNNNNGG 5 cut(s) 198, 382, 499, 506, 737
Bse118I RCCGGY 2 cut(s) 382, 668
BseDI CCNNGG 7 cut(s) 30, 89, 121, 122, 192, 208, 216
BseGI GGATG 2 cut(s) 585, 633
BseLI CCNNNNNNNGG 5 cut(s) 198, 382, 499, 506, 737
BseMII CTCAG 2 cut(s) 274, 605
BseRI GAGGAG 3 cut(s) 182, 394, 753
BseX3I CGGCCG 1 cut(s) 534
BseXI GCAGC 2 cut(s) 225, 366
BseYI CCCAGC 1 cut(s) 344
Bsh1236I CGCG 4 cut(s) 104, 194, 199, 539
Bsh1285I CGRYCG 3 cut(s) 507, 537, 625
BshFI GGCC 6 cut(s) 88, 176, 221, 447, 536, 575
BshNI GGYRCC 2 cut(s) 4, 212
BsiEI CGRYCG 3 cut(s) 507, 537, 625
BsiHKAI GWGCWC 2 cut(s) 466, 552
BsiHKCI CYCGRG 2 cut(s) 121, 146
BslFI GGGAC 2 cut(s) 131, 163
BslI CCNNNNNNNGG 5 cut(s) 198, 382, 499, 506, 737
BsmAI GTCTC 1 cut(s) 269
BsmFI GGGAC 2 cut(s) 131, 163
BsnI GGCC 6 cut(s) 88, 176, 221, 447, 536, 575
BsoBI CYCGRG 2 cut(s) 121, 146
Bsp1286I GDGCHC 2 cut(s) 466, 552
Bsp143I GATC 4 cut(s) 415, 504, 709, 724
BspANI GGCC 6 cut(s) 88, 176, 221, 447, 536, 575
BspCNI CTCAG 2 cut(s) 273, 606
BspFNI CGCG 4 cut(s) 104, 194, 199, 539
BspLI GGNNCC 7 cut(s) 6, 119, 120, 151, 214, 381, 511
BspMI ACCTGC 1 cut(s) 771
BspPI GGATC 1 cut(s) 423
BspQI GCTCTTC 1 cut(s) 125
BspT107I GGYRCC 2 cut(s) 4, 212
BsrFI RCCGGY 2 cut(s) 382, 668
BssAI RCCGGY 2 cut(s) 382, 668
BssECI CCNNGG 7 cut(s) 30, 89, 121, 122, 192, 208, 216
BssMI GATC 4 cut(s) 415, 504, 709, 724
BssNI GRCGYC 2 cut(s) 213, 435
BssSI CACGAG 1 cut(s) 732
BssT1I CCWWGG 1 cut(s) 216
Bst2BI CACGAG 1 cut(s) 732
Bst4CI ACNGT 3 cut(s) 361, 641, 703
Bst6I CTCTTC 3 cut(s) 77, 125, 272
BstACI GRCGYC 2 cut(s) 213, 435
BstBAI YACGTR 1 cut(s) 547
BstC8I GCNNGC 1 cut(s) 384
BstDEI CTNAG 2 cut(s) 260, 614
BstDSI CCRYGG 4 cut(s) 30, 89, 192, 208
BstENI CCTNNNNNAGG 1 cut(s) 735
BstF5I GGATG 2 cut(s) 585, 633
BstFNI CGCG 4 cut(s) 104, 194, 199, 539
BstH2I RGCGCY 1 cut(s) 216
BstHHI GCGC 2 cut(s) 199, 215
BstKTI GATC 4 cut(s) 418, 507, 712, 727
BstMAI GTCTC 1 cut(s) 269
BstMBI GATC 4 cut(s) 415, 504, 709, 724
BstMCI CGRYCG 3 cut(s) 507, 537, 625
BstMWI GCNNNNNNNGC 9 cut(s) 32, 170, 179, 327, 354, 441, 509, 604, 669
BstSCI CCNGG 6 cut(s) 120, 121, 135, 375, 570, 575
BstUI CGCG 4 cut(s) 104, 194, 199, 539
BstV1I GCAGC 2 cut(s) 225, 366
BstX2I RGATCY 1 cut(s) 415
BstYI RGATCY 1 cut(s) 415
BstZI CGGCCG 1 cut(s) 534
BsuRI GGCC 6 cut(s) 88, 176, 221, 447, 536, 575
BtgI CCRYGG 4 cut(s) 30, 89, 192, 208
BtsCI GGATG 2 cut(s) 585, 633
BveI ACCTGC 1 cut(s) 771
Cac8I GCNNGC 1 cut(s) 384
CfoI GCGC 2 cut(s) 199, 215
Cfr10I RCCGGY 2 cut(s) 382, 668
Cfr13I GGNCC 3 cut(s) 118, 150, 573
Cfr42I CCGCGG 1 cut(s) 195
Cfr9I CCCGGG 1 cut(s) 121
CseI GACGC 1 cut(s) 424
Csp6I GTAC 2 cut(s) 100, 601
CspCI CAANNNNNGTGG 2 cut(s) 688, 723
CviQI GTAC 2 cut(s) 100, 601
DdeI CTNAG 2 cut(s) 260, 614
DinI GGCGCC 1 cut(s) 214
DpnI GATC 4 cut(s) 417, 506, 711, 726
DpnII GATC 4 cut(s) 415, 504, 709, 724
EaeI YGGCCR 3 cut(s) 174, 445, 534
EagI CGGCCG 1 cut(s) 534
Eam1104I CTCTTC 3 cut(s) 77, 125, 272
EarI CTCTTC 3 cut(s) 77, 125, 272
EciI GGCGGA 3 cut(s) 122, 179, 336
Ecl136II GAGCTC 1 cut(s) 464
EclXI CGGCCG 1 cut(s) 534
Eco130I CCWWGG 1 cut(s) 216
Eco24I GRGCYC 1 cut(s) 466
Eco47I GGWCC 2 cut(s) 118, 150
Eco52I CGGCCG 1 cut(s) 534
Eco53kI GAGCTC 1 cut(s) 464
Eco72I CACGTG 1 cut(s) 547
Eco88I CYCGRG 2 cut(s) 121, 146
EcoICRI GAGCTC 1 cut(s) 464
EcoNI CCTNNNNNAGG 1 cut(s) 735
EcoO109I RGGNCCY 2 cut(s) 118, 150
EcoT14I CCWWGG 1 cut(s) 216
EcoT38I GRGCYC 1 cut(s) 466
EgeI GGCGCC 1 cut(s) 214
EheI GGCGCC 1 cut(s) 214
ErhI CCWWGG 1 cut(s) 216
FaiI YATR 3 cut(s) 184, 296, 389
FalI AAGNNNNNCTT 2 cut(s) 215, 247
FaqI GGGAC 2 cut(s) 131, 163
FauI CCCGC 3 cut(s) 192, 243, 665
Fnu4HI GCNGC 9 cut(s) 105, 174, 195, 239, 319, 355, 445, 537, 767
FokI GGATG 2 cut(s) 592, 620
FriOI GRGCYC 1 cut(s) 466
Fsp4HI GCNGC 9 cut(s) 105, 174, 195, 239, 319, 355, 445, 537, 767
FspBI CTAG 1 cut(s) 425
GlaI GCGC 2 cut(s) 198, 214
GluI GCNGC 9 cut(s) 105, 174, 195, 239, 319, 355, 445, 537, 767
GsaI CCCAGC 1 cut(s) 348
HaeII RGCGCY 1 cut(s) 216
HaeIII GGCC 6 cut(s) 88, 176, 221, 447, 536, 575
HgaI GACGC 1 cut(s) 424
HhaI GCGC 2 cut(s) 199, 215
Hin1I GRCGYC 2 cut(s) 213, 435
Hin6I GCGC 2 cut(s) 197, 213
HinP1I GCGC 2 cut(s) 197, 213
HphI GGTGA 3 cut(s) 584, 595, 658
Hpy166II GTNNAC 1 cut(s) 699
Hpy188I TCNGA 9 cut(s) 247, 420, 461, 468, 509, 528, 691, 714, 788
Hpy188III TCNNGA 3 cut(s) 116, 148, 271
Hpy8I GTNNAC 1 cut(s) 699
Hpy99I CGWCG 2 cut(s) 247, 707
HpyAV CCTTC 3 cut(s) 49, 163, 490
HpyCH4III ACNGT 3 cut(s) 361, 641, 703
HpyCH4IV ACGT 2 cut(s) 51, 546
HpyCH4V TGCA 1 cut(s) 64
HpyF10VI GCNNNNNNNGC 9 cut(s) 32, 170, 179, 327, 354, 441, 509, 604, 669
HpyF3I CTNAG 2 cut(s) 260, 614
HpySE526I ACGT 2 cut(s) 51, 546
Hsp92I GRCGYC 2 cut(s) 213, 435
HspAI GCGC 2 cut(s) 197, 213
KasI GGCGCC 1 cut(s) 212
KflI GGGWCCC 1 cut(s) 118
KroI GCCGGC 1 cut(s) 382
KroNI GCCGGC 1 cut(s) 384
KspI CCGCGG 1 cut(s) 195
Kzo9I GATC 4 cut(s) 415, 504, 709, 724
LguI GCTCTTC 1 cut(s) 125
LmnI GCTCC 4 cut(s) 379, 461, 469, 509
Lsp1109I GCAGC 2 cut(s) 225, 366
MaeI CTAG 1 cut(s) 425
MaeII ACGT 2 cut(s) 51, 546
MaeIII GTNAC 1 cut(s) 683
MalI GATC 4 cut(s) 417, 506, 711, 726
MboI GATC 4 cut(s) 415, 504, 709, 724
MboII GAAGA 5 cut(s) 94, 139, 142, 259, 598
MflI RGATCY 1 cut(s) 415
MhlI GDGCHC 2 cut(s) 466, 552
Mly113I GGCGCC 1 cut(s) 213
MlyI GAGTC 4 cut(s) 374, 407, 554, 680
MmeI TCCRAC 3 cut(s) 225, 393, 551
MroNI GCCGGC 1 cut(s) 382
MseI TTAA 1 cut(s) 758
MspA1I CMGCKG 3 cut(s) 194, 238, 613
MspR9I CCNGG 6 cut(s) 122, 123, 137, 377, 572, 577
MvnI CGCG 4 cut(s) 104, 194, 199, 539
MwoI GCNNNNNNNGC 9 cut(s) 32, 170, 179, 327, 354, 441, 509, 604, 669
NaeI GCCGGC 1 cut(s) 384
NarI GGCGCC 1 cut(s) 213
NciI CCSGG 6 cut(s) 122, 123, 137, 377, 572, 577
NdeII GATC 4 cut(s) 415, 504, 709, 724
NgoMIV GCCGGC 1 cut(s) 382
NlaIV GGNNCC 7 cut(s) 6, 119, 120, 151, 214, 381, 511
NmuCI GTSAC 1 cut(s) 683
PciSI GCTCTTC 1 cut(s) 125
PcsI WCGNNNNNNNCGW 2 cut(s) 153, 365
PdiI GCCGGC 1 cut(s) 384
PfeI GAWTC 9 cut(s) 112, 256, 456, 496, 541, 589, 628, 692, 744
PkrI GCNGC 9 cut(s) 106, 175, 196, 240, 320, 356, 446, 538, 768
Ple19I CGATCG 1 cut(s) 507
PleI GAGTC 4 cut(s) 373, 406, 554, 680
PluTI GGCGCC 1 cut(s) 216
PmaCI CACGTG 1 cut(s) 547
PmlI CACGTG 1 cut(s) 547
PpsI GAGTC 4 cut(s) 373, 406, 554, 680
Ppu21I YACGTR 1 cut(s) 547
PpuMI RGGWCCY 2 cut(s) 118, 150
Psp124BI GAGCTC 1 cut(s) 466
Psp5II RGGWCCY 2 cut(s) 118, 150
PspCI CACGTG 1 cut(s) 547
PspFI CCCAGC 1 cut(s) 344
PspN4I GGNNCC 7 cut(s) 6, 119, 120, 151, 214, 381, 511
PspPI GGNCC 3 cut(s) 118, 150, 573
PspPPI RGGWCCY 2 cut(s) 118, 150
PsuI RGATCY 1 cut(s) 415
PvuI CGATCG 1 cut(s) 507
PvuII CAGCTG 1 cut(s) 613
RsaI GTAC 2 cut(s) 101, 602
RsaNI GTAC 2 cut(s) 100, 601
SacI GAGCTC 1 cut(s) 466
SacII CCGCGG 1 cut(s) 195
SapI GCTCTTC 1 cut(s) 125
SaqAI TTAA 1 cut(s) 758
SatI GCNGC 9 cut(s) 105, 174, 195, 239, 319, 355, 445, 537, 767
Sau3AI GATC 4 cut(s) 415, 504, 709, 724
Sau96I GGNCC 3 cut(s) 118, 150, 573
SchI GAGTC 4 cut(s) 374, 407, 554, 680
ScrFI CCNGG 6 cut(s) 122, 123, 137, 377, 572, 577
SduI GDGCHC 2 cut(s) 466, 552
SfoI GGCGCC 1 cut(s) 214
Sfr303I CCGCGG 1 cut(s) 195
SgrAI CRCCGGYG 1 cut(s) 668
SgrBI CCGCGG 1 cut(s) 195
SinI GGWCC 2 cut(s) 118, 150
SmaI CCCGGG 1 cut(s) 123
SspDI GGCGCC 1 cut(s) 212
SspMI CTAG 1 cut(s) 425
SstI GAGCTC 1 cut(s) 466
StyD4I CCNGG 6 cut(s) 120, 121, 135, 375, 570, 575
StyI CCWWGG 1 cut(s) 216
TaaI ACNGT 3 cut(s) 361, 641, 703
TaiI ACGT 2 cut(s) 54, 549
TaqI TCGA 6 cut(s) 156, 396, 558, 621, 747, 753
TauI GCSGC 7 cut(s) 107, 176, 197, 321, 447, 539, 769
TfiI GAWTC 9 cut(s) 112, 256, 456, 496, 541, 589, 628, 692, 744
Tru1I TTAA 1 cut(s) 758
Tru9I TTAA 1 cut(s) 758
TseFI GTSAC 1 cut(s) 683
TseI GCWGC 2 cut(s) 238, 354
Tsp45I GTSAC 1 cut(s) 683
TspGWI ACGGA 1 cut(s) 197
TspMI CCCGGG 1 cut(s) 121
VpaK11BI GGWCC 2 cut(s) 118, 150
XagI CCTNNNNNAGG 1 cut(s) 735
XmaI CCCGGG 1 cut(s) 121
XspI CTAG 1 cut(s) 425
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.