Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0003786

Physical Location & Seq

Genomic Coordinates Reverse (-)

2460328 .. 2461576

Gene Structure 1249 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G051400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGGCGCCGAGAGAGAAGACGGCTACCGCCGTCAGAGCTAACGGCAACGGAAACGTGAAGGAGGTGCATTTTAGAGGAGTGAGGAAGAGGCCATGGGGCCGGTACGCCGCCGAGATCAGAGACCCCGGCAAGAAGAGCCGGGTCTGGCTCGGTACCTTCGACACGGCTGTGGAAGCCGCTCGAGCCTACGACGCCGCTGCCAGAGAGTTCCGCGGCTCCAAGGCCAAGACCAACTTCCCTCTCCCTTCTGAGAATATTAGCCTCAATATGACGAAAAATAATAACATAAATATAAATAATAATATAAATAAAAATAGTAGCGGGAGCAACAATCAGAGCCCGAGCCAGAGCAGCACCGTGGAGTCGTCCAGCCGTGAGCCGCCGGCTCTGATGGTCGATTCCTTGCCGTTGGATCTAAATCTCGCTCAGGGTGTTAGTACCGGTGGATTCGGTTCCGGCCCGATGCGGTTCCCCTTCCAGCACCACCAGGTTCCGAGCGTCGGAGCCGTCATCGGAGTTCCGGCTTCTGCAGCGGCGGCGGCGAATCACGTGCTCTACTTCGACTCGGTGTTCCGAGCCGGGATGGTGAAGAGTCATCAGTTTCATCAACGGCTGAGATTCGATCATCATAATCTCCAGCAGCATGACTTCCACGCCTACGGAGGCGGTGGGGTTTTCGCGTGTGGGGCCCAGAGCGACTCGGACTCGTCCTCGGTGGTCGATCTGAACAACCACGATCTGCCTCGCGGAGGATTGCTCGATCTCAACCTCCCTCCACCTCCGGAGCTCGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

265

Amino Acids

28.45

Weight (kDa)

9.47

Isoelectric Point (pI)

53.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003786)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15210
fragaria_vesca	FvH4_3g08750 FvH4_3g19450
malus_domestica	MD03G1231800.v1.1 MD05G1311400.v1.1 MD10G1290400.v1.1 MD10G1290600.v1.1 MD11G1252800.v1.1
prunus_persica	Prupe.4G051400_v2.0.a1 Prupe.4G176200_v2.0.a1
pyrus_communis	pycom03g17920 pycom10g24260 pycom10g24300 pycom11g22430
rosa_chinensis	RchiOBHm_Chr5g0008991 RchiOBHm_Chr5g0032721
rosa_laevigata	RLG00000031623 RLG00000033420
rosa_multiflora	Rmu_co8352207.1_g000001 Rmu_sc0002034.1_g000015 Rmu_sc0002292.1_g000002
rosa_roxburghii	Rroxscaffold_1G00047380 Rroxscaffold_1G00047840
rosa_rugosa	Rorug04G0440800 Rorug05G0133300
rosa_samantha	Rh5AG069700 Rh5BG066400 Rh5BG227000 Rh5CG077600 Rh5CG254800 Rh5DG065600 Rh5DG231700
rosa_wichuraiana	Rw5G006500 Rw5G020710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	152
AccB1I	GGYRCC	2 cut(s)	4, 152
AccBSI	CCGCTC	1 cut(s)	179
AccII	CGCG	3 cut(s)	213, 680, 747
AccIII	TCCGGA	1 cut(s)	781
AclWI	GGATC	1 cut(s)	420
AcvI	CACGTG	1 cut(s)	550
AcyI	GRCGYC	2 cut(s)	5, 192
AfaI	GTAC	3 cut(s)	104, 154, 439
AfiI	CCNNNNNNNGG	2 cut(s)	500, 749
AgeI	ACCGGT	1 cut(s)	440
AjnI	CCWGG	1 cut(s)	486
AjuI	GAANNNNNNNTTGG	2 cut(s)	218, 250
AleI	CACNNNNGTG	1 cut(s)	167
AluBI	AGCT	2 cut(s)	38, 787
AluI	AGCT	2 cut(s)	38, 787
Alw21I	GWGCWC	2 cut(s)	555, 789
Alw26I	GTCTC	1 cut(s)	114
AlwI	GGATC	1 cut(s)	420
Ama87I	CYCGRG	2 cut(s)	180, 340
Aor13HI	TCCGGA	1 cut(s)	781
AoxI	GGCC	5 cut(s)	89, 97, 222, 457, 687
ApaI	GGGCCC	1 cut(s)	691
ApeKI	GCWGC	4 cut(s)	197, 351, 530, 640
AsiGI	ACCGGT	1 cut(s)	440
Asp718I	GGTACC	1 cut(s)	152
AspLEI	GCGC	1 cut(s)	7
AspS9I	GGNCC	4 cut(s)	97, 458, 687, 688
AsuC2I	CCSGG	3 cut(s)	126, 140, 580
AsuHPI	GGTGA	1 cut(s)	598
AvaI	CYCGRG	2 cut(s)	180, 340
BaeGI	GKGCMC	1 cut(s)	691
BanI	GGYRCC	2 cut(s)	4, 152
BanII	GRGCYC	3 cut(s)	341, 691, 789
BbrPI	CACGTG	1 cut(s)	550
BbsI	GAAGAC	1 cut(s)	23
Bbv12I	GWGCWC	2 cut(s)	555, 789
BbvI	GCAGC	4 cut(s)	184, 363, 542, 652
BccI	CCATC	2 cut(s)	385, 577
BceAI	ACGGC	8 cut(s)	14, 36, 58, 180, 357, 391, 491, 626
BcgI	CGANNNNNNTGC	4 cut(s)	179, 213, 532, 566
BciT130I	CCWGG	1 cut(s)	488
BcnI	CCSGG	3 cut(s)	126, 140, 580
BcoDI	GTCTC	1 cut(s)	114
BfmI	CTRYAG	1 cut(s)	528
BfoI	RGCGCY	1 cut(s)	8
Bme1390I	CCNGG	4 cut(s)	126, 140, 488, 580
BmeT110I	CYCGRG	2 cut(s)	180, 340
BmgT120I	GGNCC	4 cut(s)	97, 458, 687, 688
BmrFI	CCNGG	4 cut(s)	126, 140, 488, 580
BmsI	GCATC	1 cut(s)	453
BpiI	GAAGAC	1 cut(s)	23
BplI	GAGNNNNNCTC	2 cut(s)	741, 773
BpmI	CTGGAG	1 cut(s)	620
Bpu10I	CCTNAGC	1 cut(s)	426
BpuMI	CCSGG	3 cut(s)	126, 140, 580
BsaAI	YACGTR	1 cut(s)	550
BsaBI	GATNNNNATC	1 cut(s)	417
BsaHI	GRCGYC	2 cut(s)	5, 192
BsaI	GGTCTC	1 cut(s)	114
BsaJI	CCNNGG	6 cut(s)	92, 124, 211, 219, 357, 711
BsaWI	WCCGGW	2 cut(s)	440, 781
Bsc4I	CCNNNNNNNGG	2 cut(s)	500, 749
Bse118I	RCCGGY	3 cut(s)	99, 382, 440
Bse8I	GATNNNNATC	1 cut(s)	417
BseAI	TCCGGA	1 cut(s)	781
BseBI	CCWGG	1 cut(s)	488
BseDI	CCNNGG	6 cut(s)	92, 124, 211, 219, 357, 711
BseGI	GGATG	1 cut(s)	588
BseJI	GATNNNNATC	1 cut(s)	417
BseLI	CCNNNNNNNGG	2 cut(s)	500, 749
BseMII	CTCAG	3 cut(s)	240, 440, 605
BseRI	GAGGAG	1 cut(s)	90
BseSI	GKGCMC	1 cut(s)	691
BseXI	GCAGC	4 cut(s)	184, 363, 542, 652
Bsh1236I	CGCG	3 cut(s)	213, 680, 747
BshFI	GGCC	5 cut(s)	91, 99, 224, 459, 689
BshNI	GGYRCC	2 cut(s)	4, 152
BshTI	ACCGGT	1 cut(s)	440
BsiHKAI	GWGCWC	2 cut(s)	555, 789
BsiHKCI	CYCGRG	2 cut(s)	180, 340
BsiSI	CCGG	9 cut(s)	100, 126, 139, 383, 441, 456, 521, 579, 782
BslI	CCNNNNNNNGG	2 cut(s)	500, 749
BsmAI	GTCTC	1 cut(s)	114
BsnI	GGCC	5 cut(s)	91, 99, 224, 459, 689
Bso31I	GGTCTC	1 cut(s)	114
BsoBI	CYCGRG	2 cut(s)	180, 340
Bsp120I	GGGCCC	1 cut(s)	687
Bsp1286I	GDGCHC	4 cut(s)	341, 555, 691, 789
Bsp13I	TCCGGA	1 cut(s)	781
Bsp143I	GATC	6 cut(s)	114, 412, 622, 721, 736, 760
Bsp19I	CCATGG	1 cut(s)	92
BspANI	GGCC	5 cut(s)	91, 99, 224, 459, 689
BspCNI	CTCAG	3 cut(s)	241, 439, 606
BspEI	TCCGGA	1 cut(s)	781
BspFNI	CGCG	3 cut(s)	213, 680, 747
BspMAI	CTGCAG	1 cut(s)	532
BspPI	GGATC	1 cut(s)	420
BspQI	GCTCTTC	1 cut(s)	128
BspT107I	GGYRCC	2 cut(s)	4, 152
BspTNI	GGTCTC	1 cut(s)	114
BsrBI	CCGCTC	1 cut(s)	179
BsrFI	RCCGGY	3 cut(s)	99, 382, 440
BssAI	RCCGGY	3 cut(s)	99, 382, 440
BssECI	CCNNGG	6 cut(s)	92, 124, 211, 219, 357, 711
BssMI	GATC	6 cut(s)	114, 412, 622, 721, 736, 760
BssNI	GRCGYC	2 cut(s)	5, 192
BssT1I	CCWWGG	2 cut(s)	92, 219
Bst2UI	CCWGG	1 cut(s)	488
Bst4CI	ACNGT	1 cut(s)	358
Bst6I	CTCTTC	3 cut(s)	80, 128, 584
BstACI	GRCGYC	2 cut(s)	5, 192
BstBAI	YACGTR	1 cut(s)	550
BstC8I	GCNNGC	2 cut(s)	384, 789
BstDEI	CTNAG	3 cut(s)	249, 426, 614
BstDSI	CCRYGG	3 cut(s)	92, 211, 357
BstENI	CCTNNNNNAGG	1 cut(s)	747
BstF5I	GGATG	1 cut(s)	588
BstFNI	CGCG	3 cut(s)	213, 680, 747
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	6 cut(s)	117, 415, 625, 724, 739, 763
BstMAI	GTCTC	1 cut(s)	114
BstMBI	GATC	6 cut(s)	114, 412, 622, 721, 736, 760
BstNI	CCWGG	1 cut(s)	488
BstSCI	CCNGG	4 cut(s)	124, 138, 486, 578
BstSFI	CTRYAG	1 cut(s)	528
BstSLI	GKGCMC	1 cut(s)	691
BstUI	CGCG	3 cut(s)	213, 680, 747
BstV1I	GCAGC	4 cut(s)	184, 363, 542, 652
BstV2I	GAAGAC	1 cut(s)	23
BstX2I	RGATCY	1 cut(s)	412
BstYI	RGATCY	1 cut(s)	412
BsuRI	GGCC	5 cut(s)	91, 99, 224, 459, 689
BtgI	CCRYGG	3 cut(s)	92, 211, 357
BtsCI	GGATG	1 cut(s)	588
Cac8I	GCNNGC	2 cut(s)	384, 789
CfoI	GCGC	1 cut(s)	7
Cfr10I	RCCGGY	3 cut(s)	99, 382, 440
Cfr13I	GGNCC	4 cut(s)	97, 458, 687, 688
Cfr42I	CCGCGG	1 cut(s)	214
CseI	GACGC	2 cut(s)	200, 487
CsiI	ACCWGGT	1 cut(s)	486
Csp6I	GTAC	3 cut(s)	103, 153, 438
CspAI	ACCGGT	1 cut(s)	440
CviAII	CATG	2 cut(s)	93, 644
CviQI	GTAC	3 cut(s)	103, 153, 438
DdeI	CTNAG	3 cut(s)	249, 426, 614
DinI	GGCGCC	1 cut(s)	6
DpnI	GATC	6 cut(s)	116, 414, 624, 723, 738, 762
DpnII	GATC	6 cut(s)	114, 412, 622, 721, 736, 760
Eam1104I	CTCTTC	3 cut(s)	80, 128, 584
EarI	CTCTTC	3 cut(s)	80, 128, 584
Ecl136II	GAGCTC	1 cut(s)	787
Eco130I	CCWWGG	2 cut(s)	92, 219
Eco24I	GRGCYC	3 cut(s)	341, 691, 789
Eco31I	GGTCTC	1 cut(s)	114
Eco53kI	GAGCTC	1 cut(s)	787
Eco72I	CACGTG	1 cut(s)	550
Eco88I	CYCGRG	2 cut(s)	180, 340
EcoICRI	GAGCTC	1 cut(s)	787
EcoNI	CCTNNNNNAGG	1 cut(s)	747
EcoO109I	RGGNCCY	1 cut(s)	687
EcoRII	CCWGG	1 cut(s)	486
EcoT14I	CCWWGG	2 cut(s)	92, 219
EcoT38I	GRGCYC	3 cut(s)	341, 691, 789
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
ErhI	CCWWGG	2 cut(s)	92, 219
FaeI	CATG	2 cut(s)	96, 647
FaiI	YATR	7 cut(s)	94, 269, 287, 293, 305, 630, 645
FalI	AAGNNNNNCTT	2 cut(s)	218, 250
FatI	CATG	2 cut(s)	92, 643
FauI	CCCGC	1 cut(s)	314
FokI	GGATG	1 cut(s)	595
FriOI	GRGCYC	3 cut(s)	341, 691, 789
GlaI	GCGC	1 cut(s)	6
GsuI	CTGGAG	1 cut(s)	620
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	5 cut(s)	91, 99, 224, 459, 689
HapII	CCGG	9 cut(s)	100, 126, 139, 383, 441, 456, 521, 579, 782
HgaI	GACGC	2 cut(s)	200, 487
HhaI	GCGC	1 cut(s)	7
Hin1I	GRCGYC	2 cut(s)	5, 192
Hin1II	CATG	2 cut(s)	96, 647
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HinfI	GANTC	9 cut(s)	362, 398, 447, 544, 563, 592, 618, 698, 704
HpaII	CCGG	9 cut(s)	100, 126, 139, 383, 441, 456, 521, 579, 782
HphI	GGTGA	1 cut(s)	598
Hpy188III	TCNNGA	1 cut(s)	782
Hpy99I	CGWCG	2 cut(s)	194, 503
HpyAV	CCTTC	4 cut(s)	52, 166, 255, 484
HpyCH4III	ACNGT	1 cut(s)	358
HpyCH4IV	ACGT	2 cut(s)	54, 549
HpyCH4V	TGCA	2 cut(s)	67, 530
HpyF3I	CTNAG	3 cut(s)	249, 426, 614
HpySE526I	ACGT	2 cut(s)	54, 549
Hsp92I	GRCGYC	2 cut(s)	5, 192
Hsp92II	CATG	2 cut(s)	96, 647
HspAI	GCGC	1 cut(s)	5
KasI	GGCGCC	1 cut(s)	4
Kpn2I	TCCGGA	1 cut(s)	781
KpnI	GGTACC	1 cut(s)	156
KroI	GCCGGC	1 cut(s)	382
KroNI	GCCGGC	1 cut(s)	384
KspI	CCGCGG	1 cut(s)	214
Kzo9I	GATC	6 cut(s)	114, 412, 622, 721, 736, 760
LguI	GCTCTTC	1 cut(s)	128
LmnI	GCTCC	4 cut(s)	221, 324, 503, 784
Lsp1109I	GCAGC	4 cut(s)	184, 363, 542, 652
LweI	GCATC	1 cut(s)	453
MabI	ACCWGGT	1 cut(s)	486
MaeII	ACGT	2 cut(s)	54, 549
MalI	GATC	6 cut(s)	116, 414, 624, 723, 738, 762
MbiI	CCGCTC	1 cut(s)	179
MboI	GATC	6 cut(s)	114, 412, 622, 721, 736, 760
MboII	GAAGA	4 cut(s)	28, 97, 145, 601
MflI	RGATCY	1 cut(s)	412
MhlI	GDGCHC	4 cut(s)	341, 555, 691, 789
Mly113I	GGCGCC	1 cut(s)	5
MlyI	GAGTC	5 cut(s)	371, 557, 601, 692, 698
MmeI	TCCRAC	2 cut(s)	390, 481
MroI	TCCGGA	1 cut(s)	781
MroNI	GCCGGC	1 cut(s)	382
MslI	CAYNNNNRTG	1 cut(s)	167
MspA1I	CMGCKG	3 cut(s)	197, 213, 533
MspI	CCGG	9 cut(s)	100, 126, 139, 383, 441, 456, 521, 579, 782
MspR9I	CCNGG	4 cut(s)	126, 140, 488, 580
MvaI	CCWGG	1 cut(s)	488
MvnI	CGCG	3 cut(s)	213, 680, 747
NaeI	GCCGGC	1 cut(s)	384
NarI	GGCGCC	1 cut(s)	5
NciI	CCSGG	3 cut(s)	126, 140, 580
NcoI	CCATGG	1 cut(s)	92
NdeII	GATC	6 cut(s)	114, 412, 622, 721, 736, 760
NgoMIV	GCCGGC	1 cut(s)	382
NlaIII	CATG	2 cut(s)	96, 647
NmeAIII	GCCGAG	2 cut(s)	33, 136
OliI	CACNNNNGTG	1 cut(s)	167
PaeR7I	CTCGAG	1 cut(s)	180
PciSI	GCTCTTC	1 cut(s)	128
PcsI	WCGNNNNNNNCGW	1 cut(s)	156
PdiI	GCCGGC	1 cut(s)	384
PfeI	GAWTC	4 cut(s)	398, 447, 544, 618
PinAI	ACCGGT	1 cut(s)	440
PleI	GAGTC	5 cut(s)	370, 557, 600, 692, 698
PluTI	GGCGCC	1 cut(s)	8
PmaCI	CACGTG	1 cut(s)	550
PmlI	CACGTG	1 cut(s)	550
PpsI	GAGTC	5 cut(s)	370, 557, 600, 692, 698
Ppu21I	YACGTR	1 cut(s)	550
Psp124BI	GAGCTC	1 cut(s)	789
Psp6I	CCWGG	1 cut(s)	486
PspCI	CACGTG	1 cut(s)	550
PspGI	CCWGG	1 cut(s)	486
PspOMI	GGGCCC	1 cut(s)	687
PspPI	GGNCC	4 cut(s)	97, 458, 687, 688
PspXI	VCTCGAGB	1 cut(s)	180
PstI	CTGCAG	1 cut(s)	532
PsuI	RGATCY	1 cut(s)	412
RsaI	GTAC	3 cut(s)	104, 154, 439
RsaNI	GTAC	3 cut(s)	103, 153, 438
RseI	CAYNNNNRTG	1 cut(s)	167
SacI	GAGCTC	1 cut(s)	789
SacII	CCGCGG	1 cut(s)	214
SapI	GCTCTTC	1 cut(s)	128
Sau3AI	GATC	6 cut(s)	114, 412, 622, 721, 736, 760
Sau96I	GGNCC	4 cut(s)	97, 458, 687, 688
SchI	GAGTC	5 cut(s)	371, 557, 601, 692, 698
ScrFI	CCNGG	4 cut(s)	126, 140, 488, 580
SduI	GDGCHC	4 cut(s)	341, 555, 691, 789
SetI	ASST	9 cut(s)	40, 57, 66, 158, 492, 552, 771, 781, 789
SexAI	ACCWGGT	1 cut(s)	486
SfaNI	GCATC	1 cut(s)	453
SfcI	CTRYAG	1 cut(s)	528
SfoI	GGCGCC	1 cut(s)	6
Sfr274I	CTCGAG	1 cut(s)	180
Sfr303I	CCGCGG	1 cut(s)	214
SgrBI	CCGCGG	1 cut(s)	214
SlaI	CTCGAG	1 cut(s)	180
SmiMI	CAYNNNNRTG	1 cut(s)	167
SmlI	CTYRAG	1 cut(s)	180
SmoI	CTYRAG	1 cut(s)	180
SspDI	GGCGCC	1 cut(s)	4
SspI	AATATT	1 cut(s)	256
SstI	GAGCTC	1 cut(s)	789
StyD4I	CCNGG	4 cut(s)	124, 138, 486, 578
StyI	CCWWGG	2 cut(s)	92, 219
TaaI	ACNGT	1 cut(s)	358
TaiI	ACGT	2 cut(s)	57, 552
TaqI	TCGA	7 cut(s)	159, 181, 396, 561, 621, 720, 759
TauI	GCSGC	8 cut(s)	110, 179, 197, 216, 382, 536, 539, 542
TfiI	GAWTC	4 cut(s)	398, 447, 544, 618
TseI	GCWGC	4 cut(s)	197, 351, 530, 640
TspDTI	ATGAA	1 cut(s)	593
TspGWI	ACGGA	2 cut(s)	63, 675
XagI	CCTNNNNNAGG	1 cut(s)	747
XhoI	CTCGAG	1 cut(s)	180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.