Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0003786

Physical Location & Seq

Genomic Coordinates Forward (+)

37935382 .. 37935792

Gene Structure 411 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1290600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGTCGATTCCTCGCCGTTTGATCTAAATCTCGCTCACGGTGTTAGCTCCGGCGGATTCGGCTCCGCGCCGATGAGGTTCCCCTTCCAGCACCACCAGGTTCCGGGAATCGGACCTTTTATCGGAGTCCCGGCTTCCTCCGCGGCAGCCGCGAATCACATGCTCTATTTCGACTCGGTGTTCAGAGCCGGCATGTTGAAGAACCACCAAATTCAACAACGGCTGAGATTCGACCAGGCCAACTTCCACCAGCATGATATCCAAGCCGCCGGTGGTGGTGGTGGTTTCGCCGGTGGTGCCCAGAGCGACTCCGACTCGTCCTCGGTCGTCGATCTGAACCAGAACGATCTGCCTCGCGGCGGCGGCGGAGGGTTCGATCTCAACTTCCCTCCTCCACCGGAACTTGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

137

Amino Acids

14.2

Weight (kDa)

5.66

Isoelectric Point (pI)

53.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003786)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15210
fragaria_vesca	FvH4_3g08750 FvH4_3g19450
malus_domestica	MD03G1231800.v1.1 MD05G1311400.v1.1 MD10G1290400.v1.1 MD10G1290600.v1.1 MD11G1252800.v1.1
prunus_persica	Prupe.4G051400_v2.0.a1 Prupe.4G176200_v2.0.a1
pyrus_communis	pycom03g17920 pycom10g24260 pycom10g24300 pycom11g22430
rosa_chinensis	RchiOBHm_Chr5g0008991 RchiOBHm_Chr5g0032721
rosa_laevigata	RLG00000031623 RLG00000033420
rosa_multiflora	Rmu_co8352207.1_g000001 Rmu_sc0002034.1_g000015 Rmu_sc0002292.1_g000002
rosa_roxburghii	Rroxscaffold_1G00047380 Rroxscaffold_1G00047840
rosa_rugosa	Rorug04G0440800 Rorug05G0133300
rosa_samantha	Rh5AG069700 Rh5BG066400 Rh5BG227000 Rh5CG077600 Rh5CG254800 Rh5DG065600 Rh5DG231700
rosa_wichuraiana	Rw5G006500 Rw5G020710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	296
AccII	CGCG	4 cut(s)	68, 143, 152, 357
AcsI	RAATTY	1 cut(s)	210
AfiI	CCNNNNNNNGG	4 cut(s)	103, 110, 122, 359
AgsI	TTSAA	2 cut(s)	199, 215
AjnI	CCWGG	2 cut(s)	96, 234
AluBI	AGCT	1 cut(s)	48
AluI	AGCT	1 cut(s)	48
AoxI	GGCC	1 cut(s)	237
ApeKI	GCWGC	1 cut(s)	146
ApoI	RAATTY	1 cut(s)	210
AspLEI	GCGC	1 cut(s)	70
AspS9I	GGNCC	1 cut(s)	113
AsuC2I	CCSGG	2 cut(s)	105, 131
AvaII	GGWCC	1 cut(s)	113
BaeGI	GKGCMC	1 cut(s)	301
BanI	GGYRCC	1 cut(s)	296
BbvI	GCAGC	1 cut(s)	158
BceAI	ACGGC	1 cut(s)	236
BcgI	CGANNNNNNTGC	2 cut(s)	142, 176
BciT130I	CCWGG	2 cut(s)	98, 236
BcnI	CCSGG	2 cut(s)	105, 131
BisI	GCNGC	7 cut(s)	144, 147, 150, 267, 358, 361, 364
BlsI	GCNGC	7 cut(s)	145, 148, 151, 268, 359, 362, 365
Bme1390I	CCNGG	4 cut(s)	98, 105, 131, 236
Bme18I	GGWCC	1 cut(s)	113
BmgT120I	GGNCC	1 cut(s)	113
BmiI	GGNNCC	4 cut(s)	64, 80, 102, 298
BmrFI	CCNGG	4 cut(s)	98, 105, 131, 236
BpuMI	CCSGG	2 cut(s)	105, 131
BsaBI	GATNNNNATC	1 cut(s)	27
BsaJI	CCNNGG	2 cut(s)	141, 321
BsaWI	WCCGGW	1 cut(s)	397
Bsc4I	CCNNNNNNNGG	4 cut(s)	103, 110, 122, 359
Bse118I	RCCGGY	3 cut(s)	188, 269, 290
Bse8I	GATNNNNATC	1 cut(s)	27
BseBI	CCWGG	2 cut(s)	98, 236
BseDI	CCNNGG	2 cut(s)	141, 321
BseJI	GATNNNNATC	1 cut(s)	27
BseLI	CCNNNNNNNGG	4 cut(s)	103, 110, 122, 359
BseMII	CTCAG	1 cut(s)	215
BseRI	GAGGAG	1 cut(s)	381
BseSI	GKGCMC	1 cut(s)	301
BseXI	GCAGC	1 cut(s)	158
Bsh1236I	CGCG	4 cut(s)	68, 143, 152, 357
Bsh1285I	CGRYCG	1 cut(s)	327
BshFI	GGCC	1 cut(s)	239
BshNI	GGYRCC	1 cut(s)	296
BsiEI	CGRYCG	1 cut(s)	327
BsiSI	CCGG	7 cut(s)	51, 104, 131, 189, 270, 291, 398
BslFI	GGGAC	1 cut(s)	113
BslI	CCNNNNNNNGG	4 cut(s)	103, 110, 122, 359
BsmFI	GGGAC	1 cut(s)	113
BsnI	GGCC	1 cut(s)	239
Bsp1286I	GDGCHC	1 cut(s)	301
Bsp143I	GATC	4 cut(s)	22, 331, 346, 376
BspANI	GGCC	1 cut(s)	239
BspCNI	CTCAG	1 cut(s)	216
BspFNI	CGCG	4 cut(s)	68, 143, 152, 357
BspLI	GGNNCC	4 cut(s)	64, 80, 102, 298
BspT107I	GGYRCC	1 cut(s)	296
BsrFI	RCCGGY	3 cut(s)	188, 269, 290
BssAI	RCCGGY	3 cut(s)	188, 269, 290
BssECI	CCNNGG	2 cut(s)	141, 321
BssMI	GATC	4 cut(s)	22, 331, 346, 376
Bst2UI	CCWGG	2 cut(s)	98, 236
Bst4CI	ACNGT	1 cut(s)	41
BstC8I	GCNNGC	1 cut(s)	190
BstDEI	CTNAG	1 cut(s)	224
BstDSI	CCRYGG	1 cut(s)	141
BstFNI	CGCG	4 cut(s)	68, 143, 152, 357
BstHHI	GCGC	1 cut(s)	70
BstKTI	GATC	4 cut(s)	25, 334, 349, 379
BstMBI	GATC	4 cut(s)	22, 331, 346, 376
BstMCI	CGRYCG	1 cut(s)	327
BstMWI	GCNNNNNNNGC	5 cut(s)	60, 140, 149, 296, 363
BstNI	CCWGG	2 cut(s)	98, 236
BstNSI	RCATGY	2 cut(s)	163, 196
BstSCI	CCNGG	4 cut(s)	96, 103, 129, 234
BstSLI	GKGCMC	1 cut(s)	301
BstUI	CGCG	4 cut(s)	68, 143, 152, 357
BstV1I	GCAGC	1 cut(s)	158
BsuRI	GGCC	1 cut(s)	239
BtgI	CCRYGG	1 cut(s)	141
Cac8I	GCNNGC	1 cut(s)	190
CfoI	GCGC	1 cut(s)	70
Cfr10I	RCCGGY	3 cut(s)	188, 269, 290
Cfr13I	GGNCC	1 cut(s)	113
Cfr42I	CCGCGG	1 cut(s)	144
CsiI	ACCWGGT	1 cut(s)	96
CviAII	CATG	3 cut(s)	160, 193, 254
CviJI	RGCY	8 cut(s)	48, 63, 134, 149, 188, 223, 239, 266
CviKI_1	RGCY	8 cut(s)	48, 63, 134, 149, 188, 223, 239, 266
DdeI	CTNAG	1 cut(s)	224
DpnI	GATC	4 cut(s)	24, 333, 348, 378
DpnII	GATC	4 cut(s)	22, 331, 346, 376
EciI	GGCGGA	2 cut(s)	69, 381
Eco32I	GATATC	1 cut(s)	259
Eco47I	GGWCC	1 cut(s)	113
EcoRII	CCWGG	2 cut(s)	96, 234
EcoRV	GATATC	1 cut(s)	259
FaeI	CATG	3 cut(s)	163, 196, 257
FaiI	YATR	3 cut(s)	161, 194, 255
FaqI	GGGAC	1 cut(s)	113
FatI	CATG	3 cut(s)	159, 192, 253
Fnu4HI	GCNGC	7 cut(s)	144, 147, 150, 267, 358, 361, 364
Fsp4HI	GCNGC	7 cut(s)	144, 147, 150, 267, 358, 361, 364
GlaI	GCGC	1 cut(s)	69
GluI	GCNGC	7 cut(s)	144, 147, 150, 267, 358, 361, 364
HaeIII	GGCC	1 cut(s)	239
HapII	CCGG	7 cut(s)	51, 104, 131, 189, 270, 291, 398
HhaI	GCGC	1 cut(s)	70
Hin1II	CATG	3 cut(s)	163, 196, 257
Hin6I	GCGC	1 cut(s)	68
HinP1I	GCGC	1 cut(s)	68
HinfI	GANTC	9 cut(s)	8, 57, 108, 126, 154, 173, 228, 308, 314
HpaII	CCGG	7 cut(s)	51, 104, 131, 189, 270, 291, 398
Hpy188I	TCNGA	5 cut(s)	113, 125, 185, 313, 336
Hpy99I	CGWCG	1 cut(s)	332
HpyAV	CCTTC	1 cut(s)	94
HpyCH4III	ACNGT	1 cut(s)	41
HpyF10VI	GCNNNNNNNGC	5 cut(s)	60, 140, 149, 296, 363
HpyF3I	CTNAG	1 cut(s)	224
Hsp92II	CATG	3 cut(s)	163, 196, 257
HspAI	GCGC	1 cut(s)	68
KroI	GCCGGC	1 cut(s)	188
KroNI	GCCGGC	1 cut(s)	190
KspI	CCGCGG	1 cut(s)	144
Kzo9I	GATC	4 cut(s)	22, 331, 346, 376
LmnI	GCTCC	2 cut(s)	53, 68
Lsp1109I	GCAGC	1 cut(s)	158
MabI	ACCWGGT	1 cut(s)	96
MalI	GATC	4 cut(s)	24, 333, 348, 378
MboI	GATC	4 cut(s)	22, 331, 346, 376
MboII	GAAGA	1 cut(s)	211
MhlI	GDGCHC	1 cut(s)	301
MluCI	AATT	1 cut(s)	210
MlyI	GAGTC	4 cut(s)	135, 167, 302, 308
MmeI	TCCRAC	1 cut(s)	336
MnlI	CCTC	8 cut(s)	22, 69, 148, 331, 362, 363, 399, 402
MroNI	GCCGGC	1 cut(s)	188
MslI	CAYNNNNRTG	1 cut(s)	252
MspA1I	CMGCKG	1 cut(s)	143
MspI	CCGG	7 cut(s)	51, 104, 131, 189, 270, 291, 398
MspR9I	CCNGG	4 cut(s)	98, 105, 131, 236
MvaI	CCWGG	2 cut(s)	98, 236
MvnI	CGCG	4 cut(s)	68, 143, 152, 357
MwoI	GCNNNNNNNGC	5 cut(s)	60, 140, 149, 296, 363
NaeI	GCCGGC	1 cut(s)	190
NciI	CCSGG	2 cut(s)	105, 131
NdeII	GATC	4 cut(s)	22, 331, 346, 376
NgoMIV	GCCGGC	1 cut(s)	188
NlaIII	CATG	3 cut(s)	163, 196, 257
NlaIV	GGNNCC	4 cut(s)	64, 80, 102, 298
NspI	RCATGY	2 cut(s)	163, 196
PdiI	GCCGGC	1 cut(s)	190
PfeI	GAWTC	5 cut(s)	8, 57, 108, 154, 228
PfoI	TCCNGGA	1 cut(s)	103
PkrI	GCNGC	7 cut(s)	145, 148, 151, 268, 359, 362, 365
PleI	GAGTC	4 cut(s)	134, 167, 302, 308
PpsI	GAGTC	4 cut(s)	134, 167, 302, 308
Psp6I	CCWGG	2 cut(s)	96, 234
PspGI	CCWGG	2 cut(s)	96, 234
PspN4I	GGNNCC	4 cut(s)	64, 80, 102, 298
PspPI	GGNCC	1 cut(s)	113
RseI	CAYNNNNRTG	1 cut(s)	252
SacII	CCGCGG	1 cut(s)	144
SatI	GCNGC	7 cut(s)	144, 147, 150, 267, 358, 361, 364
Sau3AI	GATC	4 cut(s)	22, 331, 346, 376
Sau96I	GGNCC	1 cut(s)	113
SchI	GAGTC	4 cut(s)	135, 167, 302, 308
ScrFI	CCNGG	4 cut(s)	98, 105, 131, 236
SduI	GDGCHC	1 cut(s)	301
SetI	ASST	4 cut(s)	50, 80, 102, 118
SexAI	ACCWGGT	1 cut(s)	96
Sfr303I	CCGCGG	1 cut(s)	144
SgrAI	CRCCGGYG	2 cut(s)	269, 290
SgrBI	CCGCGG	1 cut(s)	144
SinI	GGWCC	1 cut(s)	113
SmiMI	CAYNNNNRTG	1 cut(s)	252
Sse9I	AATT	1 cut(s)	210
StyD4I	CCNGG	4 cut(s)	96, 103, 129, 234
TaaI	ACNGT	1 cut(s)	41
TaqI	TCGA	5 cut(s)	6, 171, 231, 330, 375
TaqII	GACCGA	1 cut(s)	313
TasI	AATT	1 cut(s)	210
TauI	GCSGC	6 cut(s)	146, 152, 269, 360, 363, 366
TfiI	GAWTC	5 cut(s)	8, 57, 108, 154, 228
TseI	GCWGC	1 cut(s)	146
VpaK11BI	GGWCC	1 cut(s)	113
XapI	RAATTY	1 cut(s)	210
XceI	RCATGY	2 cut(s)	163, 196
XcmI	CCANNNNNNNNNTGG	1 cut(s)	269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.