Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002034.1

Orthogroup ID

OG0003786

Physical Location & Seq

Genomic Coordinates Forward (+)

60306 .. 61094

Gene Structure 789 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002034.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

atggcaccgagaaccgagaaaaccgccaccacggctaaacctaacggcaacgtgaaggaggtgcattttaggggagtgaggaagaggccgtgggggaggtacgcggcggagattcgggacccggggaagaagagccgggtctggctcgggaccttcgacacggcggaggaggcggccaaagcatacgacaccgcggcgcgggagttccgtggcgccaaggccaagacaaacttcccgctgccgtcggagaatgtgaatctcagtctcttcaagaaaaatgttgggagtaataatataaataacaacaacaacggcggcggcggaaatagcaacagccacagcccgagccagagcagcacggtggagtcgtccagccgggagccggctatgatggttgagtcctcctcgccgttggatctgaacctcgctcacggcgtcagcagcggccacgccggattcggagctccgatgaggtttcccttccagcaccaccagattccggcgatcggagccgtcatcggcgttccgacctcggccgcgaatcacgtcctctacttcgactcggtgttccgggccgggatggtgaagaatcaccagcagtaccagcaacagctgaggttcgaccggaatctcatccaccgggattttctctccggcggtggcttcaccggcgggtcgcagagtgactcggattcgtccaccgtcgttgatctgaaccaccacgatcagcctcgtggaggaggattcgacctcgacttaaacctgccgcctccggcggaactcgcctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

262

Amino Acids

28.29

Weight (kDa)

9.36

Isoelectric Point (pI)

47.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003786)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15210
fragaria_vesca	FvH4_3g08750 FvH4_3g19450
malus_domestica	MD03G1231800.v1.1 MD05G1311400.v1.1 MD10G1290400.v1.1 MD10G1290600.v1.1 MD11G1252800.v1.1
prunus_persica	Prupe.4G051400_v2.0.a1 Prupe.4G176200_v2.0.a1
pyrus_communis	pycom03g17920 pycom10g24260 pycom10g24300 pycom11g22430
rosa_chinensis	RchiOBHm_Chr5g0008991 RchiOBHm_Chr5g0032721
rosa_laevigata	RLG00000031623 RLG00000033420
rosa_multiflora	Rmu_co8352207.1_g000001 Rmu_sc0002034.1_g000015 Rmu_sc0002292.1_g000002
rosa_roxburghii	Rroxscaffold_1G00047380 Rroxscaffold_1G00047840
rosa_rugosa	Rorug04G0440800 Rorug05G0133300
rosa_samantha	Rh5AG069700 Rh5BG066400 Rh5BG227000 Rh5CG077600 Rh5CG254800 Rh5DG065600 Rh5DG231700
rosa_wichuraiana	Rw5G006500 Rw5G020710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	771
AccB1I	GGYRCC	2 cut(s)	4, 212
AccII	CGCG	4 cut(s)	104, 194, 199, 539
AclWI	GGATC	1 cut(s)	423
AcoI	YGGCCR	3 cut(s)	174, 445, 534
AcyI	GRCGYC	2 cut(s)	213, 435
AfaI	GTAC	2 cut(s)	101, 602
AfiI	CCNNNNNNNGG	5 cut(s)	198, 382, 499, 506, 737
AgsI	TTSAA	1 cut(s)	271
AjiI	CACGTC	1 cut(s)	547
AjuI	GAANNNNNNNTTGG	2 cut(s)	215, 247
AluBI	AGCT	2 cut(s)	464, 613
AluI	AGCT	2 cut(s)	464, 613
Alw21I	GWGCWC	1 cut(s)	466
Alw26I	GTCTC	1 cut(s)	269
AlwI	GGATC	1 cut(s)	423
Ama87I	CYCGRG	3 cut(s)	121, 146, 343
AoxI	GGCC	6 cut(s)	86, 174, 219, 445, 534, 573
ApeKI	GCWGC	3 cut(s)	238, 354, 441
AspLEI	GCGC	2 cut(s)	199, 215
AspS9I	GGNCC	3 cut(s)	118, 150, 573
AsuC2I	CCSGG	7 cut(s)	122, 123, 137, 377, 572, 577, 641
AsuHPI	GGTGA	3 cut(s)	584, 595, 658
AvaI	CYCGRG	3 cut(s)	121, 146, 343
AvaII	GGWCC	2 cut(s)	118, 150
BanI	GGYRCC	2 cut(s)	4, 212
BanII	GRGCYC	1 cut(s)	466
BauI	CACGAG	1 cut(s)	732
Bbv12I	GWGCWC	1 cut(s)	466
BbvCI	CCTCAGC	1 cut(s)	614
BbvI	GCAGC	3 cut(s)	225, 366, 453
BccI	CCATC	2 cut(s)	385, 574
BceAI	ACGGC	9 cut(s)	48, 61, 73, 177, 226, 328, 394, 448, 497
BcnI	CCSGG	7 cut(s)	122, 123, 137, 377, 572, 577, 641
BcoDI	GTCTC	1 cut(s)	269
BfoI	RGCGCY	1 cut(s)	216
BfuAI	ACCTGC	1 cut(s)	771
BglI	GCCNNNNNGGC	1 cut(s)	32
Bme1390I	CCNGG	7 cut(s)	122, 123, 137, 377, 572, 577, 641
Bme18I	GGWCC	2 cut(s)	118, 150
BmeT110I	CYCGRG	3 cut(s)	121, 146, 343
BmgBI	CACGTC	1 cut(s)	547
BmgT120I	GGNCC	3 cut(s)	118, 150, 573
BmiI	GGNNCC	7 cut(s)	6, 119, 120, 151, 214, 381, 511
BmrFI	CCNGG	7 cut(s)	122, 123, 137, 377, 572, 577, 641
BplI	GAGNNNNNCTC	2 cut(s)	389, 421
Bpu10I	CCTNAGC	1 cut(s)	614
BpuMI	CCSGG	7 cut(s)	122, 123, 137, 377, 572, 577, 641
BsaHI	GRCGYC	2 cut(s)	213, 435
BsaJI	CCNNGG	8 cut(s)	30, 89, 121, 122, 192, 208, 216, 531
BsaWI	WCCGGW	1 cut(s)	624
Bsc4I	CCNNNNNNNGG	5 cut(s)	198, 382, 499, 506, 737
Bse118I	RCCGGY	2 cut(s)	382, 668
BseDI	CCNNGG	8 cut(s)	30, 89, 121, 122, 192, 208, 216, 531
BseGI	GGATG	2 cut(s)	585, 633
BseLI	CCNNNNNNNGG	5 cut(s)	198, 382, 499, 506, 737
BseMII	CTCAG	2 cut(s)	274, 605
BseRI	GAGGAG	3 cut(s)	182, 394, 753
BseX3I	CGGCCG	1 cut(s)	534
BseXI	GCAGC	3 cut(s)	225, 366, 453
Bsh1236I	CGCG	4 cut(s)	104, 194, 199, 539
Bsh1285I	CGRYCG	3 cut(s)	507, 537, 625
BshFI	GGCC	6 cut(s)	88, 176, 221, 447, 536, 575
BshNI	GGYRCC	2 cut(s)	4, 212
BsiEI	CGRYCG	3 cut(s)	507, 537, 625
BsiHKAI	GWGCWC	1 cut(s)	466
BsiHKCI	CYCGRG	3 cut(s)	121, 146, 343
BslFI	GGGAC	2 cut(s)	131, 163
BslI	CCNNNNNNNGG	5 cut(s)	198, 382, 499, 506, 737
BsmAI	GTCTC	1 cut(s)	269
BsmFI	GGGAC	2 cut(s)	131, 163
BsnI	GGCC	6 cut(s)	88, 176, 221, 447, 536, 575
BsoBI	CYCGRG	3 cut(s)	121, 146, 343
Bsp1286I	GDGCHC	1 cut(s)	466
Bsp143I	GATC	4 cut(s)	415, 504, 709, 724
BspANI	GGCC	6 cut(s)	88, 176, 221, 447, 536, 575
BspCNI	CTCAG	2 cut(s)	273, 606
BspFNI	CGCG	4 cut(s)	104, 194, 199, 539
BspLI	GGNNCC	7 cut(s)	6, 119, 120, 151, 214, 381, 511
BspMI	ACCTGC	1 cut(s)	771
BspPI	GGATC	1 cut(s)	423
BspQI	GCTCTTC	1 cut(s)	125
BspT107I	GGYRCC	2 cut(s)	4, 212
BsrFI	RCCGGY	2 cut(s)	382, 668
BssAI	RCCGGY	2 cut(s)	382, 668
BssECI	CCNNGG	8 cut(s)	30, 89, 121, 122, 192, 208, 216, 531
BssMI	GATC	4 cut(s)	415, 504, 709, 724
BssNI	GRCGYC	2 cut(s)	213, 435
BssSI	CACGAG	1 cut(s)	732
BssT1I	CCWWGG	1 cut(s)	216
Bst2BI	CACGAG	1 cut(s)	732
Bst4CI	ACNGT	2 cut(s)	361, 703
Bst6I	CTCTTC	3 cut(s)	77, 125, 272
BstACI	GRCGYC	2 cut(s)	213, 435
BstC8I	GCNNGC	1 cut(s)	384
BstDEI	CTNAG	2 cut(s)	260, 614
BstDSI	CCRYGG	4 cut(s)	30, 89, 192, 208
BstENI	CCTNNNNNAGG	1 cut(s)	735
BstF5I	GGATG	2 cut(s)	585, 633
BstFNI	CGCG	4 cut(s)	104, 194, 199, 539
BstH2I	RGCGCY	1 cut(s)	216
BstHHI	GCGC	2 cut(s)	199, 215
BstKTI	GATC	4 cut(s)	418, 507, 712, 727
BstMAI	GTCTC	1 cut(s)	269
BstMBI	GATC	4 cut(s)	415, 504, 709, 724
BstMCI	CGRYCG	3 cut(s)	507, 537, 625
BstSCI	CCNGG	7 cut(s)	120, 121, 135, 375, 570, 575, 639
BstUI	CGCG	4 cut(s)	104, 194, 199, 539
BstV1I	GCAGC	3 cut(s)	225, 366, 453
BstX2I	RGATCY	1 cut(s)	415
BstYI	RGATCY	1 cut(s)	415
BstZI	CGGCCG	1 cut(s)	534
BsuRI	GGCC	6 cut(s)	88, 176, 221, 447, 536, 575
BtgI	CCRYGG	4 cut(s)	30, 89, 192, 208
BtrI	CACGTC	1 cut(s)	547
BtsCI	GGATG	2 cut(s)	585, 633
BveI	ACCTGC	1 cut(s)	771
Cac8I	GCNNGC	1 cut(s)	384
CfoI	GCGC	2 cut(s)	199, 215
Cfr10I	RCCGGY	2 cut(s)	382, 668
Cfr13I	GGNCC	3 cut(s)	118, 150, 573
Cfr42I	CCGCGG	1 cut(s)	195
Cfr9I	CCCGGG	1 cut(s)	121
CseI	GACGC	1 cut(s)	424
Csp6I	GTAC	2 cut(s)	100, 601
CspCI	CAANNNNNGTGG	2 cut(s)	688, 723
CviQI	GTAC	2 cut(s)	100, 601
DdeI	CTNAG	2 cut(s)	260, 614
DinI	GGCGCC	1 cut(s)	214
DpnI	GATC	4 cut(s)	417, 506, 711, 726
DpnII	GATC	4 cut(s)	415, 504, 709, 724
EaeI	YGGCCR	3 cut(s)	174, 445, 534
EagI	CGGCCG	1 cut(s)	534
Eam1104I	CTCTTC	3 cut(s)	77, 125, 272
EarI	CTCTTC	3 cut(s)	77, 125, 272
EciI	GGCGGA	3 cut(s)	122, 179, 336
Ecl136II	GAGCTC	1 cut(s)	464
EclXI	CGGCCG	1 cut(s)	534
Eco130I	CCWWGG	1 cut(s)	216
Eco24I	GRGCYC	1 cut(s)	466
Eco47I	GGWCC	2 cut(s)	118, 150
Eco52I	CGGCCG	1 cut(s)	534
Eco53kI	GAGCTC	1 cut(s)	464
Eco88I	CYCGRG	3 cut(s)	121, 146, 343
EcoICRI	GAGCTC	1 cut(s)	464
EcoNI	CCTNNNNNAGG	1 cut(s)	735
EcoO109I	RGGNCCY	2 cut(s)	118, 150
EcoT14I	CCWWGG	1 cut(s)	216
EcoT38I	GRGCYC	1 cut(s)	466
EgeI	GGCGCC	1 cut(s)	214
EheI	GGCGCC	1 cut(s)	214
ErhI	CCWWGG	1 cut(s)	216
FaiI	YATR	3 cut(s)	184, 296, 389
FalI	AAGNNNNNCTT	2 cut(s)	215, 247
FaqI	GGGAC	2 cut(s)	131, 163
FauI	CCCGC	3 cut(s)	192, 243, 665
FokI	GGATG	2 cut(s)	592, 620
FriOI	GRGCYC	1 cut(s)	466
GlaI	GCGC	2 cut(s)	198, 214
HaeII	RGCGCY	1 cut(s)	216
HaeIII	GGCC	6 cut(s)	88, 176, 221, 447, 536, 575
HgaI	GACGC	1 cut(s)	424
HhaI	GCGC	2 cut(s)	199, 215
Hin1I	GRCGYC	2 cut(s)	213, 435
Hin6I	GCGC	2 cut(s)	197, 213
HinP1I	GCGC	2 cut(s)	197, 213
HphI	GGTGA	3 cut(s)	584, 595, 658
Hpy166II	GTNNAC	1 cut(s)	699
Hpy188I	TCNGA	8 cut(s)	247, 420, 461, 468, 509, 528, 691, 714
Hpy188III	TCNNGA	3 cut(s)	116, 148, 271
Hpy8I	GTNNAC	1 cut(s)	699
Hpy99I	CGWCG	2 cut(s)	247, 707
HpyAV	CCTTC	3 cut(s)	49, 163, 490
HpyCH4III	ACNGT	2 cut(s)	361, 703
HpyCH4IV	ACGT	2 cut(s)	51, 546
HpyCH4V	TGCA	1 cut(s)	64
HpyF3I	CTNAG	2 cut(s)	260, 614
HpySE526I	ACGT	2 cut(s)	51, 546
Hsp92I	GRCGYC	2 cut(s)	213, 435
HspAI	GCGC	2 cut(s)	197, 213
KasI	GGCGCC	1 cut(s)	212
KflI	GGGWCCC	1 cut(s)	118
KroI	GCCGGC	1 cut(s)	382
KroNI	GCCGGC	1 cut(s)	384
KspI	CCGCGG	1 cut(s)	195
Kzo9I	GATC	4 cut(s)	415, 504, 709, 724
LguI	GCTCTTC	1 cut(s)	125
LmnI	GCTCC	4 cut(s)	379, 461, 469, 509
Lsp1109I	GCAGC	3 cut(s)	225, 366, 453
MaeII	ACGT	2 cut(s)	51, 546
MaeIII	GTNAC	1 cut(s)	683
MalI	GATC	4 cut(s)	417, 506, 711, 726
MboI	GATC	4 cut(s)	415, 504, 709, 724
MboII	GAAGA	5 cut(s)	94, 139, 142, 259, 598
MflI	RGATCY	1 cut(s)	415
MhlI	GDGCHC	1 cut(s)	466
Mly113I	GGCGCC	1 cut(s)	213
MlyI	GAGTC	4 cut(s)	374, 407, 554, 680
MmeI	TCCRAC	3 cut(s)	225, 393, 551
MroNI	GCCGGC	1 cut(s)	382
MseI	TTAA	1 cut(s)	758
MspA1I	CMGCKG	4 cut(s)	194, 238, 444, 613
MspR9I	CCNGG	7 cut(s)	122, 123, 137, 377, 572, 577, 641
MvnI	CGCG	4 cut(s)	104, 194, 199, 539
NaeI	GCCGGC	1 cut(s)	384
NarI	GGCGCC	1 cut(s)	213
NciI	CCSGG	7 cut(s)	122, 123, 137, 377, 572, 577, 641
NdeII	GATC	4 cut(s)	415, 504, 709, 724
NgoMIV	GCCGGC	1 cut(s)	382
NlaIV	GGNNCC	7 cut(s)	6, 119, 120, 151, 214, 381, 511
NmeAIII	GCCGAG	1 cut(s)	512
NmuCI	GTSAC	1 cut(s)	683
PciSI	GCTCTTC	1 cut(s)	125
PcsI	WCGNNNNNNNCGW	3 cut(s)	153, 365, 432
PdiI	GCCGGC	1 cut(s)	384
PfeI	GAWTC	9 cut(s)	112, 256, 456, 496, 541, 589, 628, 692, 744
Ple19I	CGATCG	1 cut(s)	507
PleI	GAGTC	4 cut(s)	373, 406, 554, 680
PluTI	GGCGCC	1 cut(s)	216
PpsI	GAGTC	4 cut(s)	373, 406, 554, 680
PpuMI	RGGWCCY	2 cut(s)	118, 150
Psp124BI	GAGCTC	1 cut(s)	466
Psp5II	RGGWCCY	2 cut(s)	118, 150
PspN4I	GGNNCC	7 cut(s)	6, 119, 120, 151, 214, 381, 511
PspPI	GGNCC	3 cut(s)	118, 150, 573
PspPPI	RGGWCCY	2 cut(s)	118, 150
PsuI	RGATCY	1 cut(s)	415
PvuI	CGATCG	1 cut(s)	507
PvuII	CAGCTG	1 cut(s)	613
RsaI	GTAC	2 cut(s)	101, 602
RsaNI	GTAC	2 cut(s)	100, 601
SacI	GAGCTC	1 cut(s)	466
SacII	CCGCGG	1 cut(s)	195
SapI	GCTCTTC	1 cut(s)	125
SaqAI	TTAA	1 cut(s)	758
Sau3AI	GATC	4 cut(s)	415, 504, 709, 724
Sau96I	GGNCC	3 cut(s)	118, 150, 573
SchI	GAGTC	4 cut(s)	374, 407, 554, 680
ScrFI	CCNGG	7 cut(s)	122, 123, 137, 377, 572, 577, 641
SduI	GDGCHC	1 cut(s)	466
SfoI	GGCGCC	1 cut(s)	214
Sfr303I	CCGCGG	1 cut(s)	195
SgrAI	CRCCGGYG	1 cut(s)	668
SgrBI	CCGCGG	1 cut(s)	195
SinI	GGWCC	2 cut(s)	118, 150
SmaI	CCCGGG	1 cut(s)	123
SspDI	GGCGCC	1 cut(s)	212
SstI	GAGCTC	1 cut(s)	466
StyD4I	CCNGG	7 cut(s)	120, 121, 135, 375, 570, 575, 639
StyI	CCWWGG	1 cut(s)	216
TaaI	ACNGT	2 cut(s)	361, 703
TaiI	ACGT	2 cut(s)	54, 549
TaqI	TCGA	5 cut(s)	156, 558, 621, 747, 753
TauI	GCSGC	8 cut(s)	107, 176, 197, 318, 321, 447, 539, 769
TfiI	GAWTC	9 cut(s)	112, 256, 456, 496, 541, 589, 628, 692, 744
Tru1I	TTAA	1 cut(s)	758
Tru9I	TTAA	1 cut(s)	758
TseFI	GTSAC	1 cut(s)	683
TseI	GCWGC	3 cut(s)	238, 354, 441
Tsp45I	GTSAC	1 cut(s)	683
TspGWI	ACGGA	1 cut(s)	197
TspMI	CCCGGG	1 cut(s)	121
VpaK11BI	GGWCC	2 cut(s)	118, 150
XagI	CCTNNNNNAGG	1 cut(s)	735
XmaI	CCCGGG	1 cut(s)	121

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.