Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0003786

Physical Location & Seq

Genomic Coordinates Reverse (-)

19002276 .. 19003231

Gene Structure 956 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g17920.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGTATAGCAGGTGGTCAGAAGTAACCGAGGTGGTTCGTGCAAGAGAAGCCACATTGTGCACTCTCCACTCTCCACAACACACAAGCGCCCGAAAAGGAGCGTCGCTTTTACACTCTCTCCTCGCTATAAAACCCACCTTCACTCCCCTCCCTCTCCTCAGCCAATCCTCCCTCTCTCTCTCTCTCTCTCTTTCGGCATTTTTTACCACAAAGCTCACATCTTTCTCCAAAGCAGCCATGGCTCCGACGACGGCGAAGTCCCTATCCAAAACCGGCTCGGAGGACCCGAATCCGACGTCCAACGAGATCCGGTACCGGGGTGTCCGGAAGAGGCCTTGGGGACGCTACGCCGCCGAGATCAGAGATCCCGGGAAGAAGACCCGCGTCTGGCTTGGGACCTTCGACACCGCTGTGGACGCAGCGCGTGCGTACGACAAGGCGGCGCGTGAGTTTCGCGGAGGCAAGGCGAAGACCAACTTCCCCACCCCCTCTGAGCTCCAGCTCGACGCCGTCAACATCGTCAACATGAACAACGCCGCTAAATCAGCGGCGGCGACGAACGTCAGTTCGACCGCCCGGCTCCCATATCCGGCTCGGCCCACACCGACTACTCCGCCTCCTCAGTCGTCGACTTCGAGCGAAGCTCCCGCAACGCACGGCTCGATCTCGACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001101 GO:0002218 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009682 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009753 GO:0009755 GO:0009864 GO:0009867 GO:0009873 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010104 GO:0010105 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010646 GO:0010648 GO:0016604 GO:0019219 GO:0019222 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0031349 GO:0031974 GO:0031981 GO:0032870 GO:0033993 GO:0035556 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0045892 GO:0045934 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070297 GO:0070298 GO:0070887 GO:0071229 GO:0071310 GO:0071369 GO:0071395 GO:0071495 GO:0080090 GO:0080134 GO:0097159 GO:0097305 GO:0098542 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1901701 GO:1902531 GO:1902532 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

225

Amino Acids

24.09

Weight (kDa)

10.27

Isoelectric Point (pI)

44.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003786)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15210
fragaria_vesca	FvH4_3g08750 FvH4_3g19450
malus_domestica	MD03G1231800.v1.1 MD05G1311400.v1.1 MD10G1290400.v1.1 MD10G1290600.v1.1 MD11G1252800.v1.1
prunus_persica	Prupe.4G051400_v2.0.a1 Prupe.4G176200_v2.0.a1
pyrus_communis	pycom03g17920 pycom10g24260 pycom10g24300 pycom11g22430
rosa_chinensis	RchiOBHm_Chr5g0008991 RchiOBHm_Chr5g0032721
rosa_laevigata	RLG00000031623 RLG00000033420
rosa_multiflora	Rmu_co8352207.1_g000001 Rmu_sc0002034.1_g000015 Rmu_sc0002292.1_g000002
rosa_roxburghii	Rroxscaffold_1G00047380 Rroxscaffold_1G00047840
rosa_rugosa	Rorug04G0440800 Rorug05G0133300
rosa_samantha	Rh5AG069700 Rh5BG066400 Rh5BG227000 Rh5CG077600 Rh5CG254800 Rh5DG065600 Rh5DG231700
rosa_wichuraiana	Rw5G006500 Rw5G020710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	256
AatII	GACGTC	1 cut(s)	299
Acc65I	GGTACC	1 cut(s)	312
AccB1I	GGYRCC	1 cut(s)	312
AccI	GTMKAC	1 cut(s)	629
AccII	CGCG	4 cut(s)	384, 424, 445, 456
AccIII	TCCGGA	1 cut(s)	324
AclWI	GGATC	2 cut(s)	301, 359
AcyI	GRCGYC	2 cut(s)	296, 507
AdeI	CACNNNGTG	1 cut(s)	57
AfaI	GTAC	2 cut(s)	314, 431
AfiI	CCNNNNNNNGG	3 cut(s)	316, 387, 589
AleI	CACNNNNGTG	1 cut(s)	410
AluBI	AGCT	4 cut(s)	214, 496, 502, 644
AluI	AGCT	4 cut(s)	214, 496, 502, 644
Alw21I	GWGCWC	2 cut(s)	62, 498
Alw44I	GTGCAC	1 cut(s)	58
AlwI	GGATC	2 cut(s)	301, 359
Ama87I	CYCGRG	1 cut(s)	368
Aor13HI	TCCGGA	1 cut(s)	324
AoxI	GGCC	2 cut(s)	332, 596
ApaLI	GTGCAC	1 cut(s)	58
ApeKI	GCWGC	2 cut(s)	233, 419
ArsI	GACNNNNNNTTYG	2 cut(s)	281, 313
Asp718I	GGTACC	1 cut(s)	312
AspLEI	GCGC	3 cut(s)	89, 424, 445
AspS9I	GGNCC	3 cut(s)	283, 396, 597
AsuC2I	CCSGG	4 cut(s)	317, 369, 370, 577
AvaI	CYCGRG	1 cut(s)	368
AvaII	GGWCC	2 cut(s)	283, 396
BaeGI	GKGCMC	1 cut(s)	62
BaeI	ACNNNNGTAYC	2 cut(s)	304, 337
BanI	GGYRCC	1 cut(s)	312
BanII	GRGCYC	1 cut(s)	498
BbsI	GAAGAC	2 cut(s)	383, 476
Bbv12I	GWGCWC	2 cut(s)	62, 498
BbvCI	CCTCAGC	1 cut(s)	158
BbvI	GCAGC	2 cut(s)	245, 431
BceAI	ACGGC	3 cut(s)	267, 494, 673
BcnI	CCSGG	4 cut(s)	317, 369, 370, 577
BfoI	RGCGCY	1 cut(s)	90
BisI	GCNGC	7 cut(s)	234, 351, 420, 441, 537, 549, 552
BlsI	GCNGC	7 cut(s)	235, 352, 421, 442, 538, 550, 553
Bme1390I	CCNGG	4 cut(s)	317, 369, 370, 577
Bme18I	GGWCC	2 cut(s)	283, 396
BmeT110I	CYCGRG	1 cut(s)	368
BmgT120I	GGNCC	3 cut(s)	283, 396, 597
BmiI	GGNNCC	5 cut(s)	243, 285, 314, 397, 581
BmrFI	CCNGG	4 cut(s)	317, 369, 370, 577
BoxI	GACNNNNGTC	2 cut(s)	383, 560
BpiI	GAAGAC	2 cut(s)	383, 476
BplI	GAGNNNNNCTC	2 cut(s)	628, 660
BpmI	CTGGAG	1 cut(s)	482
Bpu10I	CCTNAGC	1 cut(s)	158
BpuMI	CCSGG	4 cut(s)	317, 369, 370, 577
BsaHI	GRCGYC	2 cut(s)	296, 507
BsaJI	CCNNGG	5 cut(s)	27, 237, 316, 335, 368
BsaWI	WCCGGW	2 cut(s)	309, 324
BsaXI	ACNNNNNCTCC	6 cut(s)	102, 127, 132, 157, 601, 631
Bsc4I	CCNNNNNNNGG	3 cut(s)	316, 387, 589
Bse118I	RCCGGY	1 cut(s)	272
BseAI	TCCGGA	1 cut(s)	324
BseDI	CCNNGG	5 cut(s)	27, 237, 316, 335, 368
BseLI	CCNNNNNNNGG	3 cut(s)	316, 387, 589
BseMII	CTCAG	3 cut(s)	172, 483, 635
BseRI	GAGGAG	3 cut(s)	110, 146, 609
BseSI	GKGCMC	1 cut(s)	62
BseXI	GCAGC	2 cut(s)	245, 431
Bsh1236I	CGCG	4 cut(s)	384, 424, 445, 456
Bsh1285I	CGRYCG	1 cut(s)	573
BshFI	GGCC	2 cut(s)	334, 598
BshNI	GGYRCC	1 cut(s)	312
BsiEI	CGRYCG	1 cut(s)	573
BsiHKAI	GWGCWC	2 cut(s)	62, 498
BsiHKCI	CYCGRG	1 cut(s)	368
BsiSI	CCGG	7 cut(s)	273, 310, 316, 325, 369, 577, 590
BsiWI	CGTACG	1 cut(s)	429
BslFI	GGGAC	3 cut(s)	244, 354, 409
BslI	CCNNNNNNNGG	3 cut(s)	316, 387, 589
BsmFI	GGGAC	3 cut(s)	244, 354, 409
BsnI	GGCC	2 cut(s)	334, 598
BsoBI	CYCGRG	1 cut(s)	368
Bsp1286I	GDGCHC	2 cut(s)	62, 498
Bsp13I	TCCGGA	1 cut(s)	324
Bsp143I	GATC	4 cut(s)	306, 357, 364, 663
Bsp19I	CCATGG	1 cut(s)	237
BspANI	GGCC	2 cut(s)	334, 598
BspCNI	CTCAG	3 cut(s)	171, 484, 634
BspEI	TCCGGA	1 cut(s)	324
BspFNI	CGCG	4 cut(s)	384, 424, 445, 456
BspLI	GGNNCC	5 cut(s)	243, 285, 314, 397, 581
BspPI	GGATC	2 cut(s)	301, 359
BspT107I	GGYRCC	1 cut(s)	312
BsrFI	RCCGGY	1 cut(s)	272
BssAI	RCCGGY	1 cut(s)	272
BssECI	CCNNGG	5 cut(s)	27, 237, 316, 335, 368
BssMI	GATC	4 cut(s)	306, 357, 364, 663
BssNI	GRCGYC	2 cut(s)	296, 507
BssT1I	CCWWGG	2 cut(s)	237, 335
Bst6I	CTCTTC	1 cut(s)	323
BstACI	GRCGYC	2 cut(s)	296, 507
BstAPI	GCANNNNNTGC	1 cut(s)	425
BstC8I	GCNNGC	1 cut(s)	426
BstDEI	CTNAG	3 cut(s)	158, 492, 621
BstDSI	CCRYGG	1 cut(s)	237
BstFNI	CGCG	4 cut(s)	384, 424, 445, 456
BstH2I	RGCGCY	1 cut(s)	90
BstHHI	GCGC	3 cut(s)	89, 424, 445
BstKTI	GATC	4 cut(s)	309, 360, 367, 666
BstMBI	GATC	4 cut(s)	306, 357, 364, 663
BstMCI	CGRYCG	1 cut(s)	573
BstMWI	GCNNNNNNNGC	5 cut(s)	47, 239, 416, 425, 545
BstPAI	GACNNNNGTC	2 cut(s)	383, 560
BstSCI	CCNGG	4 cut(s)	315, 367, 368, 575
BstSLI	GKGCMC	1 cut(s)	62
BstUI	CGCG	4 cut(s)	384, 424, 445, 456
BstV1I	GCAGC	2 cut(s)	245, 431
BstV2I	GAAGAC	2 cut(s)	383, 476
BstX2I	RGATCY	2 cut(s)	306, 364
BstYI	RGATCY	2 cut(s)	306, 364
BsuRI	GGCC	2 cut(s)	334, 598
BtgI	CCRYGG	1 cut(s)	237
Cac8I	GCNNGC	1 cut(s)	426
CfoI	GCGC	3 cut(s)	89, 424, 445
Cfr10I	RCCGGY	1 cut(s)	272
Cfr13I	GGNCC	3 cut(s)	283, 396, 597
Cfr9I	CCCGGG	1 cut(s)	368
CseI	GACGC	5 cut(s)	90, 351, 373, 425, 515
Csp6I	GTAC	2 cut(s)	313, 430
CviAII	CATG	2 cut(s)	238, 526
CviQI	GTAC	2 cut(s)	313, 430
DdeI	CTNAG	3 cut(s)	158, 492, 621
DpnI	GATC	4 cut(s)	308, 359, 366, 665
DpnII	GATC	4 cut(s)	306, 357, 364, 663
DraIII	CACNNNGTG	1 cut(s)	57
DrdI	GACNNNNNNGTC	1 cut(s)	256
DseDI	GACNNNNNNGTC	1 cut(s)	256
Eam1104I	CTCTTC	1 cut(s)	323
EarI	CTCTTC	1 cut(s)	323
EciI	GGCGGA	1 cut(s)	603
Ecl136II	GAGCTC	1 cut(s)	496
Eco130I	CCWWGG	2 cut(s)	237, 335
Eco147I	AGGCCT	1 cut(s)	334
Eco24I	GRGCYC	1 cut(s)	498
Eco47I	GGWCC	2 cut(s)	283, 396
Eco53kI	GAGCTC	1 cut(s)	496
Eco88I	CYCGRG	1 cut(s)	368
EcoICRI	GAGCTC	1 cut(s)	496
EcoO109I	RGGNCCY	2 cut(s)	283, 396
EcoT14I	CCWWGG	2 cut(s)	237, 335
EcoT38I	GRGCYC	1 cut(s)	498
ErhI	CCWWGG	2 cut(s)	237, 335
FaeI	CATG	2 cut(s)	241, 529
FaiI	YATR	5 cut(s)	6, 128, 239, 527, 586
FalI	AAGNNNNNCTT	2 cut(s)	461, 493
FaqI	GGGAC	3 cut(s)	244, 354, 409
FatI	CATG	2 cut(s)	237, 525
FauI	CCCGC	2 cut(s)	389, 655
FblI	GTMKAC	1 cut(s)	629
Fnu4HI	GCNGC	7 cut(s)	234, 351, 420, 441, 537, 549, 552
FriOI	GRGCYC	1 cut(s)	498
Fsp4HI	GCNGC	7 cut(s)	234, 351, 420, 441, 537, 549, 552
GlaI	GCGC	3 cut(s)	88, 423, 444
GluI	GCNGC	7 cut(s)	234, 351, 420, 441, 537, 549, 552
GsuI	CTGGAG	1 cut(s)	482
HaeII	RGCGCY	1 cut(s)	90
HaeIII	GGCC	2 cut(s)	334, 598
HapII	CCGG	7 cut(s)	273, 310, 316, 325, 369, 577, 590
HgaI	GACGC	5 cut(s)	90, 351, 373, 425, 515
HhaI	GCGC	3 cut(s)	89, 424, 445
Hin1I	GRCGYC	2 cut(s)	296, 507
Hin1II	CATG	2 cut(s)	241, 529
Hin6I	GCGC	3 cut(s)	87, 422, 443
HinP1I	GCGC	3 cut(s)	87, 422, 443
HincII	GTYRAC	3 cut(s)	514, 523, 630
HindII	GTYRAC	3 cut(s)	514, 523, 630
HinfI	GANTC	1 cut(s)	289
HpaII	CCGG	7 cut(s)	273, 310, 316, 325, 369, 577, 590
Hpy166II	GTNNAC	5 cut(s)	60, 415, 514, 523, 630
Hpy188I	TCNGA	6 cut(s)	19, 246, 280, 294, 362, 493
Hpy188III	TCNNGA	2 cut(s)	325, 667
Hpy8I	GTNNAC	5 cut(s)	60, 415, 514, 523, 630
Hpy99I	CGWCG	7 cut(s)	106, 250, 253, 298, 509, 559, 631
HpyAV	CCTTC	2 cut(s)	148, 409
HpyCH4IV	ACGT	2 cut(s)	296, 561
HpyCH4V	TGCA	2 cut(s)	41, 60
HpyF10VI	GCNNNNNNNGC	5 cut(s)	47, 239, 416, 425, 545
HpyF3I	CTNAG	3 cut(s)	158, 492, 621
HpySE526I	ACGT	2 cut(s)	296, 561
Hsp92I	GRCGYC	2 cut(s)	296, 507
Hsp92II	CATG	2 cut(s)	241, 529
HspAI	GCGC	3 cut(s)	87, 422, 443
Kpn2I	TCCGGA	1 cut(s)	324
KpnI	GGTACC	1 cut(s)	316
Kzo9I	GATC	4 cut(s)	306, 357, 364, 663
LmnI	GCTCC	5 cut(s)	98, 247, 501, 585, 649
LpnPI	CCDG	9 cut(s)	286, 323, 329, 338, 373, 382, 512, 590, 603
Lsp1109I	GCAGC	2 cut(s)	245, 431
MaeII	ACGT	2 cut(s)	296, 561
MaeIII	GTNAC	1 cut(s)	22
MalI	GATC	4 cut(s)	308, 359, 366, 665
MboI	GATC	4 cut(s)	306, 357, 364, 663
MboII	GAAGA	4 cut(s)	340, 385, 388, 481
MflI	RGATCY	2 cut(s)	306, 364
MhlI	GDGCHC	2 cut(s)	62, 498
MmeI	TCCRAC	3 cut(s)	269, 317, 324
MroI	TCCGGA	1 cut(s)	324
MslI	CAYNNNNRTG	1 cut(s)	410
MspA1I	CMGCKG	2 cut(s)	410, 548
MspI	CCGG	7 cut(s)	273, 310, 316, 325, 369, 577, 590
MspR9I	CCNGG	4 cut(s)	317, 369, 370, 577
MvnI	CGCG	4 cut(s)	384, 424, 445, 456
MwoI	GCNNNNNNNGC	5 cut(s)	47, 239, 416, 425, 545
NciI	CCSGG	4 cut(s)	317, 369, 370, 577
NcoI	CCATGG	1 cut(s)	237
NdeII	GATC	4 cut(s)	306, 357, 364, 663
NlaIII	CATG	2 cut(s)	241, 529
NlaIV	GGNNCC	5 cut(s)	243, 285, 314, 397, 581
NmeAIII	GCCGAG	2 cut(s)	379, 574
OliI	CACNNNNGTG	1 cut(s)	410
PceI	AGGCCT	1 cut(s)	334
PcsI	WCGNNNNNNNCGW	3 cut(s)	284, 632, 659
PfeI	GAWTC	1 cut(s)	289
Pfl23II	CGTACG	1 cut(s)	429
PflFI	GACNNNGTC	1 cut(s)	509
PkrI	GCNGC	7 cut(s)	235, 352, 421, 442, 538, 550, 553
PpuMI	RGGWCCY	2 cut(s)	283, 396
PshAI	GACNNNNGTC	2 cut(s)	383, 560
Psp124BI	GAGCTC	1 cut(s)	498
Psp5II	RGGWCCY	2 cut(s)	283, 396
PspLI	CGTACG	1 cut(s)	429
PspN4I	GGNNCC	5 cut(s)	243, 285, 314, 397, 581
PspPI	GGNCC	3 cut(s)	283, 396, 597
PspPPI	RGGWCCY	2 cut(s)	283, 396
PsuI	RGATCY	2 cut(s)	306, 364
PsyI	GACNNNGTC	1 cut(s)	509
RsaI	GTAC	2 cut(s)	314, 431
RsaNI	GTAC	2 cut(s)	313, 430
RseI	CAYNNNNRTG	1 cut(s)	410
SacI	GAGCTC	1 cut(s)	498
SalI	GTCGAC	1 cut(s)	628
SatI	GCNGC	7 cut(s)	234, 351, 420, 441, 537, 549, 552
Sau3AI	GATC	4 cut(s)	306, 357, 364, 663
Sau96I	GGNCC	3 cut(s)	283, 396, 597
ScrFI	CCNGG	4 cut(s)	317, 369, 370, 577
SduI	GDGCHC	2 cut(s)	62, 498
SinI	GGWCC	2 cut(s)	283, 396
SmaI	CCCGGG	1 cut(s)	370
SmiMI	CAYNNNNRTG	1 cut(s)	410
SseBI	AGGCCT	1 cut(s)	334
SstI	GAGCTC	1 cut(s)	498
StuI	AGGCCT	1 cut(s)	334
StyD4I	CCNGG	4 cut(s)	315, 367, 368, 575
StyI	CCWWGG	2 cut(s)	237, 335
TaiI	ACGT	2 cut(s)	299, 564
TaqI	TCGA	7 cut(s)	402, 504, 569, 629, 635, 662, 668
TauI	GCSGC	5 cut(s)	353, 443, 539, 551, 554
TfiI	GAWTC	1 cut(s)	289
TseI	GCWGC	2 cut(s)	233, 419
TspDTI	ATGAA	1 cut(s)	542
TspMI	CCCGGG	1 cut(s)	368
Tth111I	GACNNNGTC	1 cut(s)	509
VneI	GTGCAC	1 cut(s)	58
VpaK11BI	GGWCC	2 cut(s)	283, 396
XcmI	CCANNNNNNNNNTGG	1 cut(s)	235
XmaI	CCCGGG	1 cut(s)	368
XmiI	GTMKAC	1 cut(s)	629
ZraI	GACGTC	1 cut(s)	297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.