Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8352207.1

Orthogroup ID

OG0003786

Physical Location & Seq

Genomic Coordinates Forward (+)

777 .. 1047

Gene Structure 271 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8352207.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 271 bp

atggctccgaaaacggcagcaaaatccggctccgggacccagaacccgaagccgaactcgctcgagatccgttatcggggcgtcaggaagaggccttggggtcgctacgctgccgagatcagggatcctggcaagaagacgagggtctggctcggcacgttcgatacggctgaggaggcggcgcgtgcgtacgacaaggcggcgcgggagtaccgtggagctaaggctaagaccaacttcccaacgccggccgagcttcacgcgaacacaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001101 GO:0002218 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009682 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009753 GO:0009755 GO:0009864 GO:0009867 GO:0009873 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010104 GO:0010105 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010646 GO:0010648 GO:0016604 GO:0019219 GO:0019222 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0031349 GO:0031974 GO:0031981 GO:0032870 GO:0033993 GO:0035556 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0045892 GO:0045934 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070297 GO:0070298 GO:0070887 GO:0071229 GO:0071310 GO:0071369 GO:0071395 GO:0071495 GO:0080090 GO:0080134 GO:0097159 GO:0097305 GO:0098542 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1901701 GO:1902531 GO:1902532 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

90

Amino Acids

10.01

Weight (kDa)

10.32

Isoelectric Point (pI)

19.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003786)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15210
fragaria_vesca	FvH4_3g08750 FvH4_3g19450
malus_domestica	MD03G1231800.v1.1 MD05G1311400.v1.1 MD10G1290400.v1.1 MD10G1290600.v1.1 MD11G1252800.v1.1
prunus_persica	Prupe.4G051400_v2.0.a1 Prupe.4G176200_v2.0.a1
pyrus_communis	pycom03g17920 pycom10g24260 pycom10g24300 pycom11g22430
rosa_chinensis	RchiOBHm_Chr5g0008991 RchiOBHm_Chr5g0032721
rosa_laevigata	RLG00000031623 RLG00000033420
rosa_multiflora	Rmu_co8352207.1_g000001 Rmu_sc0002034.1_g000015 Rmu_sc0002292.1_g000002
rosa_roxburghii	Rroxscaffold_1G00047380 Rroxscaffold_1G00047840
rosa_rugosa	Rorug04G0440800 Rorug05G0133300
rosa_samantha	Rh5AG069700 Rh5BG066400 Rh5BG227000 Rh5CG077600 Rh5CG254800 Rh5DG065600 Rh5DG231700
rosa_wichuraiana	Rw5G006500 Rw5G020710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	184, 205, 263
AciI	CCGC	3 cut(s)	179, 200, 205
AclWI	GGATC	3 cut(s)	61, 119, 132
AcoI	YGGCCR	1 cut(s)	249
AcyI	GRCGYC	1 cut(s)	81
AfaI	GTAC	2 cut(s)	191, 212
AfiI	CCNNNNNNNGG	4 cut(s)	33, 76, 120, 247
AjnI	CCWGG	1 cut(s)	127
AluBI	AGCT	2 cut(s)	221, 256
AluI	AGCT	2 cut(s)	221, 256
AlwI	GGATC	3 cut(s)	61, 119, 132
Ama87I	CYCGRG	1 cut(s)	62
AoxI	GGCC	2 cut(s)	92, 249
ApeKI	GCWGC	2 cut(s)	17, 110
AspLEI	GCGC	2 cut(s)	184, 205
AspS9I	GGNCC	1 cut(s)	36
AsuC2I	CCSGG	1 cut(s)	34
AvaI	CYCGRG	1 cut(s)	62
AvaII	GGWCC	1 cut(s)	36
BamHI	GGATCC	1 cut(s)	124
BbsI	GAAGAC	1 cut(s)	143
BbvCI	CCTCAGC	1 cut(s)	171
BbvI	GCAGC	2 cut(s)	29, 97
BceAI	ACGGC	2 cut(s)	30, 183
BciT130I	CCWGG	1 cut(s)	129
BcnI	CCSGG	1 cut(s)	34
BisI	GCNGC	4 cut(s)	18, 111, 180, 201
BlsI	GCNGC	4 cut(s)	19, 112, 181, 202
Bme1390I	CCNGG	2 cut(s)	34, 129
Bme18I	GGWCC	1 cut(s)	36
BmeT110I	CYCGRG	1 cut(s)	62
BmgT120I	GGNCC	1 cut(s)	36
BmiI	GGNNCC	5 cut(s)	6, 31, 37, 38, 126
BmrFI	CCNGG	2 cut(s)	34, 129
BoxI	GACNNNNGTC	1 cut(s)	143
BpiI	GAAGAC	1 cut(s)	143
Bpu10I	CCTNAGC	2 cut(s)	171, 222
BpuMI	CCSGG	1 cut(s)	34
BsaHI	GRCGYC	1 cut(s)	81
BsaJI	CCNNGG	2 cut(s)	95, 214
Bsc4I	CCNNNNNNNGG	4 cut(s)	33, 76, 120, 247
Bse118I	RCCGGY	1 cut(s)	247
BseBI	CCWGG	1 cut(s)	129
BseDI	CCNNGG	2 cut(s)	95, 214
BseLI	CCNNNNNNNGG	4 cut(s)	33, 76, 120, 247
BseMII	CTCAG	1 cut(s)	162
BseRI	GAGGAG	1 cut(s)	188
BseX3I	CGGCCG	1 cut(s)	249
BseXI	GCAGC	2 cut(s)	29, 97
Bsh1236I	CGCG	3 cut(s)	184, 205, 263
Bsh1285I	CGRYCG	1 cut(s)	252
BshFI	GGCC	2 cut(s)	94, 251
BsiEI	CGRYCG	1 cut(s)	252
BsiHKCI	CYCGRG	1 cut(s)	62
BsiSI	CCGG	3 cut(s)	27, 33, 248
BsiWI	CGTACG	1 cut(s)	189
BslFI	GGGAC	1 cut(s)	49
BslI	CCNNNNNNNGG	4 cut(s)	33, 76, 120, 247
BsmFI	GGGAC	1 cut(s)	49
BsnI	GGCC	2 cut(s)	94, 251
BsoBI	CYCGRG	1 cut(s)	62
Bsp143I	GATC	3 cut(s)	66, 117, 124
BspACI	CCGC	3 cut(s)	179, 200, 205
BspANI	GGCC	2 cut(s)	94, 251
BspCNI	CTCAG	1 cut(s)	163
BspFNI	CGCG	3 cut(s)	184, 205, 263
BspLI	GGNNCC	5 cut(s)	6, 31, 37, 38, 126
BspPI	GGATC	3 cut(s)	61, 119, 132
BsrFI	RCCGGY	1 cut(s)	247
BssAI	RCCGGY	1 cut(s)	247
BssECI	CCNNGG	2 cut(s)	95, 214
BssMI	GATC	3 cut(s)	66, 117, 124
BssNI	GRCGYC	1 cut(s)	81
BssT1I	CCWWGG	1 cut(s)	95
Bst2UI	CCWGG	1 cut(s)	129
Bst4CI	ACNGT	1 cut(s)	215
Bst6I	CTCTTC	1 cut(s)	83
BstACI	GRCGYC	1 cut(s)	81
BstC8I	GCNNGC	2 cut(s)	186, 249
BstDEI	CTNAG	3 cut(s)	171, 222, 228
BstDSI	CCRYGG	1 cut(s)	214
BstFNI	CGCG	3 cut(s)	184, 205, 263
BstHHI	GCGC	2 cut(s)	184, 205
BstKTI	GATC	3 cut(s)	69, 120, 127
BstMBI	GATC	3 cut(s)	66, 117, 124
BstMCI	CGRYCG	1 cut(s)	252
BstMWI	GCNNNNNNNGC	4 cut(s)	58, 176, 185, 253
BstNI	CCWGG	1 cut(s)	129
BstPAI	GACNNNNGTC	1 cut(s)	143
BstSCI	CCNGG	2 cut(s)	32, 127
BstUI	CGCG	3 cut(s)	184, 205, 263
BstV1I	GCAGC	2 cut(s)	29, 97
BstV2I	GAAGAC	1 cut(s)	143
BstX2I	RGATCY	2 cut(s)	66, 124
BstYI	RGATCY	2 cut(s)	66, 124
BstZI	CGGCCG	1 cut(s)	249
BsuRI	GGCC	2 cut(s)	94, 251
BtgI	CCRYGG	1 cut(s)	214
Cac8I	GCNNGC	2 cut(s)	186, 249
CfoI	GCGC	2 cut(s)	184, 205
Cfr10I	RCCGGY	1 cut(s)	247
Cfr13I	GGNCC	1 cut(s)	36
CseI	GACGC	1 cut(s)	70
Csp6I	GTAC	2 cut(s)	190, 211
CviQI	GTAC	2 cut(s)	190, 211
DdeI	CTNAG	3 cut(s)	171, 222, 228
DpnI	GATC	3 cut(s)	68, 119, 126
DpnII	GATC	3 cut(s)	66, 117, 124
EaeI	YGGCCR	1 cut(s)	249
EagI	CGGCCG	1 cut(s)	249
Eam1104I	CTCTTC	1 cut(s)	83
EarI	CTCTTC	1 cut(s)	83
EclXI	CGGCCG	1 cut(s)	249
Eco130I	CCWWGG	1 cut(s)	95
Eco147I	AGGCCT	1 cut(s)	94
Eco47I	GGWCC	1 cut(s)	36
Eco52I	CGGCCG	1 cut(s)	249
Eco88I	CYCGRG	1 cut(s)	62
EcoO109I	RGGNCCY	1 cut(s)	36
EcoRII	CCWGG	1 cut(s)	127
EcoT14I	CCWWGG	1 cut(s)	95
ErhI	CCWWGG	1 cut(s)	95
FalI	AAGNNNNNCTT	2 cut(s)	221, 253
FaqI	GGGAC	1 cut(s)	49
FauI	CCCGC	1 cut(s)	198
Fnu4HI	GCNGC	4 cut(s)	18, 111, 180, 201
Fsp4HI	GCNGC	4 cut(s)	18, 111, 180, 201
GlaI	GCGC	2 cut(s)	183, 204
GluI	GCNGC	4 cut(s)	18, 111, 180, 201
HaeIII	GGCC	2 cut(s)	94, 251
HapII	CCGG	3 cut(s)	27, 33, 248
HgaI	GACGC	1 cut(s)	70
HhaI	GCGC	2 cut(s)	184, 205
Hin1I	GRCGYC	1 cut(s)	81
Hin6I	GCGC	2 cut(s)	182, 203
HinP1I	GCGC	2 cut(s)	182, 203
HpaII	CCGG	3 cut(s)	27, 33, 248
Hpy188I	TCNGA	1 cut(s)	9
Hpy188III	TCNNGA	2 cut(s)	64, 85
HpyCH4III	ACNGT	1 cut(s)	215
HpyCH4IV	ACGT	1 cut(s)	158
HpyF10VI	GCNNNNNNNGC	4 cut(s)	58, 176, 185, 253
HpyF3I	CTNAG	3 cut(s)	171, 222, 228
HpySE526I	ACGT	1 cut(s)	158
Hsp92I	GRCGYC	1 cut(s)	81
HspAI	GCGC	2 cut(s)	182, 203
KflI	GGGWCCC	1 cut(s)	36
KroI	GCCGGC	1 cut(s)	247
KroNI	GCCGGC	1 cut(s)	249
Kzo9I	GATC	3 cut(s)	66, 117, 124
LmnI	GCTCC	3 cut(s)	10, 35, 218
LpnPI	CCDG	9 cut(s)	40, 46, 53, 70, 106, 114, 133, 141, 261
Lsp1109I	GCAGC	2 cut(s)	29, 97
MaeII	ACGT	1 cut(s)	158
MalI	GATC	3 cut(s)	68, 119, 126
MboI	GATC	3 cut(s)	66, 117, 124
MboII	GAAGA	2 cut(s)	100, 148
MflI	RGATCY	2 cut(s)	66, 124
MnlI	CCTC	4 cut(s)	84, 135, 166, 169
MroNI	GCCGGC	1 cut(s)	247
MspI	CCGG	3 cut(s)	27, 33, 248
MspR9I	CCNGG	2 cut(s)	34, 129
MvaI	CCWGG	1 cut(s)	129
MvnI	CGCG	3 cut(s)	184, 205, 263
MwoI	GCNNNNNNNGC	4 cut(s)	58, 176, 185, 253
NaeI	GCCGGC	1 cut(s)	249
NciI	CCSGG	1 cut(s)	34
NdeII	GATC	3 cut(s)	66, 117, 124
NgoMIV	GCCGGC	1 cut(s)	247
NlaIV	GGNNCC	5 cut(s)	6, 31, 37, 38, 126
NmeAIII	GCCGAG	2 cut(s)	132, 139
PaeR7I	CTCGAG	1 cut(s)	62
PceI	AGGCCT	1 cut(s)	94
PcsI	WCGNNNNNNNCGW	1 cut(s)	159
PdiI	GCCGGC	1 cut(s)	249
Pfl23II	CGTACG	1 cut(s)	189
PfoI	TCCNGGA	1 cut(s)	32
PkrI	GCNGC	4 cut(s)	19, 112, 181, 202
PpuMI	RGGWCCY	1 cut(s)	36
PshAI	GACNNNNGTC	1 cut(s)	143
Psp5II	RGGWCCY	1 cut(s)	36
Psp6I	CCWGG	1 cut(s)	127
PspGI	CCWGG	1 cut(s)	127
PspLI	CGTACG	1 cut(s)	189
PspN4I	GGNNCC	5 cut(s)	6, 31, 37, 38, 126
PspPI	GGNCC	1 cut(s)	36
PspPPI	RGGWCCY	1 cut(s)	36
PsuI	RGATCY	2 cut(s)	66, 124
RsaI	GTAC	2 cut(s)	191, 212
RsaNI	GTAC	2 cut(s)	190, 211
SatI	GCNGC	4 cut(s)	18, 111, 180, 201
Sau3AI	GATC	3 cut(s)	66, 117, 124
Sau96I	GGNCC	1 cut(s)	36
ScrFI	CCNGG	2 cut(s)	34, 129
SetI	ASST	3 cut(s)	161, 223, 258
Sfr274I	CTCGAG	1 cut(s)	62
SinI	GGWCC	1 cut(s)	36
SlaI	CTCGAG	1 cut(s)	62
SmlI	CTYRAG	1 cut(s)	62
SmoI	CTYRAG	1 cut(s)	62
SseBI	AGGCCT	1 cut(s)	94
SsiI	CCGC	3 cut(s)	179, 200, 205
StuI	AGGCCT	1 cut(s)	94
StyD4I	CCNGG	2 cut(s)	32, 127
StyI	CCWWGG	1 cut(s)	95
TaaI	ACNGT	1 cut(s)	215
TaiI	ACGT	1 cut(s)	161
TaqI	TCGA	2 cut(s)	63, 162
TauI	GCSGC	2 cut(s)	182, 203
TseI	GCWGC	2 cut(s)	17, 110
TspGWI	ACGGA	1 cut(s)	59
VpaK11BI	GGWCC	1 cut(s)	36
XhoI	CTCGAG	1 cut(s)	62

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.