pycom10g26620

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0015045
Physical Location & Seq
Reverse (-)
27897186 .. 27898113
928 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 855 bp
ATGTTCATTTTAGAATACGTACATATTCTTTCCAGAATCCGTAGTGCTTTAACGTCCCTTCAATTCCCCGCCACCTTATTCACTTCACACAACATATGTAAACCAACTCCATTAACTGACAGTTCTATCCTTCTGACCAAATCCTTCCTCTCGTACATTCATTTCTCCCAGAAAATGTACAACTCCAACCAGTTGCCGATCGAGTCCGCCACCCCAGAGCAACAACGACCCATGAAGCGTCAACACACCGCCCGGTACTACGCCCACCGCGTCCGCGAAAGTCTCACCACCCGGGTCTCCAAGGTCATATGCACCATTTTCTTAGGCCTCCTCCTCATCCTTGGCATCATAGCGTTCATACTATGGCTCAGTCTACGTCCCCACCGCCCAAGATTTCATATCCATGCATTTTCGGTTCCGGGTTTGGCTCAAGAAACGGGGTTCGAAAATGCTGAGATAACGTTCAATGCCACGGCCCGTAACGCGAACCATAATATTGGCATATATTATGGTTCGATGGACGGAACGGTGTACTATAGGGACCAACGGATCGGGTCAATAACGGGTTTACTGCAACCGTTTTATCAGGATCCGAAGAATACAACAATAGTGATGGGGTCATTTAAGGGAGCCACCTTAACGGTTAATAACCAACGTTGGACGGAGTTCTTGAATGATCGTAAAAGAGGAACGGTTGTGTTTCGGCTTGAAATTACGGCCGCGATCAGATTTAAGATTCGCGCTTGGTATAGCAAGCGCCACCGGATGCACGCCACCTGTGATGTTGATGTCGGCCCGGACGGCTTGATTTTGCCCATTTCTAAAGATAGGAGATGCCCTGTGTATTTCACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

285

Amino Acids

32.69

Weight (kDa)

10.04

Isoelectric Point (pI)

55.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 158 - 260 1e-11 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015045)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G05220
fragaria_vesca FvH4_3g02710
malus_domestica MD05G1340700.v1.1 MD10G1314200.v1.1
prunus_persica Prupe.4G026800_v2.0.a1
pyrus_communis pycom05g30990 pycom10g26620
rosa_chinensis RchiOBHm_Chr5g0004071
rosa_laevigata RLG00000031201
rosa_multiflora Rmu_sc0000547.1_g000030
rosa_rugosa Rorug04G0409800
rosa_samantha Rh5AG037300 Rh5BG036300 Rh5CG040000 Rh5DG035800
rosa_wichuraiana Rw5G003370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 373
AccII CGCG 5 cut(s) 270, 276, 485, 722, 741
AciI CCGC 7 cut(s) 69, 207, 249, 268, 274, 385, 720
AclI AACGTT 2 cut(s) 461, 655
AclWI GGATC 3 cut(s) 557, 584, 597
AcoI YGGCCR 1 cut(s) 717
AfaI GTAC 5 cut(s) 21, 155, 179, 257, 533
AgsI TTSAA 4 cut(s) 62, 466, 673, 710
Alw26I GTCTC 2 cut(s) 287, 301
AlwI GGATC 3 cut(s) 557, 584, 597
Ama87I CYCGRG 1 cut(s) 291
AoxI GGCC 4 cut(s) 325, 474, 717, 793
AspLEI GCGC 2 cut(s) 743, 759
AspS9I GGNCC 3 cut(s) 475, 541, 794
AsuC2I CCSGG 5 cut(s) 253, 292, 293, 420, 797
AsuHPI GGTGA 2 cut(s) 277, 841
AsuII TTCGAA 1 cut(s) 444
AvaI CYCGRG 1 cut(s) 291
AvaII GGWCC 1 cut(s) 541
BamHI GGATCC 1 cut(s) 589
BccI CCATC 2 cut(s) 511, 607
BceAI ACGGC 3 cut(s) 489, 732, 817
BcnI CCSGG 5 cut(s) 253, 292, 293, 420, 797
BcoDI GTCTC 2 cut(s) 287, 301
BfmI CTRYAG 1 cut(s) 535
BfoI RGCGCY 1 cut(s) 760
BglI GCCNNNNNGGC 1 cut(s) 801
BisI GCNGC 1 cut(s) 720
BlsI GCNGC 1 cut(s) 721
Bme1390I CCNGG 5 cut(s) 253, 292, 293, 420, 797
Bme18I GGWCC 1 cut(s) 541
BmeT110I CYCGRG 1 cut(s) 291
BmgT120I GGNCC 3 cut(s) 475, 541, 794
BmiI GGNNCC 4 cut(s) 417, 542, 591, 631
BmrFI CCNGG 5 cut(s) 253, 292, 293, 420, 797
BmsI GCATC 3 cut(s) 354, 756, 824
Bpu14I TTCGAA 1 cut(s) 444
BpuEI CTTGAG 1 cut(s) 414
BpuMI CCSGG 5 cut(s) 253, 292, 293, 420, 797
BsaAI YACGTR 1 cut(s) 19
BsaI GGTCTC 1 cut(s) 301
BsaJI CCNNGG 4 cut(s) 291, 300, 340, 471
BsaWI WCCGGW 1 cut(s) 762
Bse1I ACTGG 1 cut(s) 190
BseDI CCNNGG 4 cut(s) 291, 300, 340, 471
BseGI GGATG 2 cut(s) 336, 771
BseMII CTCAG 2 cut(s) 382, 444
BseNI ACTGG 1 cut(s) 190
BseRI GAGGAG 2 cut(s) 320, 323
BseX3I CGGCCG 1 cut(s) 717
Bsh1236I CGCG 5 cut(s) 270, 276, 485, 722, 741
Bsh1285I CGRYCG 2 cut(s) 201, 720
BshFI GGCC 4 cut(s) 327, 476, 719, 795
BsiEI CGRYCG 2 cut(s) 201, 720
BsiHKCI CYCGRG 1 cut(s) 291
BsiSI CCGG 5 cut(s) 253, 292, 419, 763, 797
BslFI GGGAC 3 cut(s) 40, 363, 554
BsmAI GTCTC 2 cut(s) 287, 301
BsmFI GGGAC 3 cut(s) 40, 363, 554
BsnI GGCC 4 cut(s) 327, 476, 719, 795
Bso31I GGTCTC 1 cut(s) 301
BsoBI CYCGRG 1 cut(s) 291
Bsp119I TTCGAA 1 cut(s) 444
Bsp1407I TGTACA 1 cut(s) 177
Bsp143I GATC 5 cut(s) 198, 549, 589, 676, 723
BspACI CCGC 7 cut(s) 69, 207, 249, 268, 274, 385, 720
BspANI GGCC 4 cut(s) 327, 476, 719, 795
BspCNI CTCAG 2 cut(s) 381, 445
BspFNI CGCG 5 cut(s) 270, 276, 485, 722, 741
BspLI GGNNCC 4 cut(s) 417, 542, 591, 631
BspPI GGATC 3 cut(s) 557, 584, 597
BspT104I TTCGAA 1 cut(s) 444
BspTNI GGTCTC 1 cut(s) 301
BsrGI TGTACA 1 cut(s) 177
BsrI ACTGG 1 cut(s) 190
BssECI CCNNGG 4 cut(s) 291, 300, 340, 471
BssMI GATC 5 cut(s) 198, 549, 589, 676, 723
BssT1I CCWWGG 2 cut(s) 300, 340
Bst4CI ACNGT 5 cut(s) 122, 529, 579, 643, 694
BstAUI TGTACA 1 cut(s) 177
BstBAI YACGTR 1 cut(s) 19
BstBI TTCGAA 1 cut(s) 444
BstC8I GCNNGC 2 cut(s) 755, 771
BstDEI CTNAG 3 cut(s) 322, 368, 453
BstDSI CCRYGG 1 cut(s) 471
BstF5I GGATG 2 cut(s) 336, 771
BstFNI CGCG 5 cut(s) 270, 276, 485, 722, 741
BstH2I RGCGCY 1 cut(s) 760
BstHHI GCGC 2 cut(s) 743, 759
BstKTI GATC 5 cut(s) 201, 552, 592, 679, 726
BstMAI GTCTC 2 cut(s) 287, 301
BstMBI GATC 5 cut(s) 198, 549, 589, 676, 723
BstMCI CGRYCG 2 cut(s) 201, 720
BstMWI GCNNNNNNNGC 2 cut(s) 482, 801
BstSCI CCNGG 5 cut(s) 251, 290, 291, 418, 795
BstSFI CTRYAG 1 cut(s) 535
BstSNI TACGTA 1 cut(s) 19
BstUI CGCG 5 cut(s) 270, 276, 485, 722, 741
BstX2I RGATCY 1 cut(s) 589
BstXI CCANNNNNNTGG 1 cut(s) 497
BstYI RGATCY 1 cut(s) 589
BstZI CGGCCG 1 cut(s) 717
BsuRI GGCC 4 cut(s) 327, 476, 719, 795
BtgI CCRYGG 1 cut(s) 471
BtsCI GGATG 2 cut(s) 336, 771
Cac8I GCNNGC 2 cut(s) 755, 771
CfoI GCGC 2 cut(s) 743, 759
Cfr13I GGNCC 3 cut(s) 475, 541, 794
Cfr9I CCCGGG 1 cut(s) 291
CseI GACGC 2 cut(s) 227, 259
Csp6I GTAC 5 cut(s) 20, 154, 178, 256, 532
CviAII CATG 2 cut(s) 232, 404
CviJI RGCY 9 cut(s) 327, 367, 428, 476, 632, 706, 719, 795, 804
CviKI_1 RGCY 9 cut(s) 327, 367, 428, 476, 632, 706, 719, 795, 804
CviQI GTAC 5 cut(s) 20, 154, 178, 256, 532
DdeI CTNAG 3 cut(s) 322, 368, 453
DpnI GATC 5 cut(s) 200, 551, 591, 678, 725
DpnII GATC 5 cut(s) 198, 549, 589, 676, 723
EaeI YGGCCR 1 cut(s) 717
EagI CGGCCG 1 cut(s) 717
EciI GGCGGA 1 cut(s) 196
EclXI CGGCCG 1 cut(s) 717
Eco105I TACGTA 1 cut(s) 19
Eco130I CCWWGG 2 cut(s) 300, 340
Eco147I AGGCCT 1 cut(s) 327
Eco31I GGTCTC 1 cut(s) 301
Eco47I GGWCC 1 cut(s) 541
Eco52I CGGCCG 1 cut(s) 717
Eco88I CYCGRG 1 cut(s) 291
EcoT14I CCWWGG 2 cut(s) 300, 340
EcoT22I ATGCAT 1 cut(s) 409
ErhI CCWWGG 2 cut(s) 300, 340
FaeI CATG 2 cut(s) 235, 407
FaqI GGGAC 3 cut(s) 40, 363, 554
FatI CATG 2 cut(s) 231, 403
FauI CCCGC 1 cut(s) 76
FauNDI CATATG 2 cut(s) 95, 308
FblI GTMKAC 1 cut(s) 373
Fnu4HI GCNGC 1 cut(s) 720
FokI GGATG 2 cut(s) 323, 778
Fsp4HI GCNGC 1 cut(s) 720
GlaI GCGC 2 cut(s) 742, 758
GluI GCNGC 1 cut(s) 720
HaeII RGCGCY 1 cut(s) 760
HaeIII GGCC 4 cut(s) 327, 476, 719, 795
HapII CCGG 5 cut(s) 253, 292, 419, 763, 797
HgaI GACGC 2 cut(s) 227, 259
HhaI GCGC 2 cut(s) 743, 759
Hin1II CATG 2 cut(s) 235, 407
Hin6I GCGC 2 cut(s) 741, 757
HinP1I GCGC 2 cut(s) 741, 757
HincII GTYRAC 1 cut(s) 242
HindII GTYRAC 1 cut(s) 242
HinfI GANTC 3 cut(s) 36, 203, 736
HpaII CCGG 5 cut(s) 253, 292, 419, 763, 797
HphI GGTGA 2 cut(s) 277, 841
Hpy166II GTNNAC 5 cut(s) 101, 242, 374, 532, 569
Hpy188I TCNGA 3 cut(s) 135, 594, 728
Hpy188III TCNNGA 4 cut(s) 33, 431, 587, 670
Hpy8I GTNNAC 5 cut(s) 101, 242, 374, 532, 569
HpyAV CCTTC 3 cut(s) 68, 140, 154
HpyCH4III ACNGT 5 cut(s) 122, 529, 579, 643, 694
HpyCH4IV ACGT 5 cut(s) 18, 53, 376, 461, 655
HpyCH4V TGCA 4 cut(s) 312, 407, 574, 769
HpyF10VI GCNNNNNNNGC 2 cut(s) 482, 801
HpyF3I CTNAG 3 cut(s) 322, 368, 453
HpySE526I ACGT 5 cut(s) 18, 53, 376, 461, 655
Hsp92II CATG 2 cut(s) 235, 407
HspAI GCGC 2 cut(s) 741, 757
Kzo9I GATC 5 cut(s) 198, 549, 589, 676, 723
LmnI GCTCC 1 cut(s) 629
LweI GCATC 3 cut(s) 354, 756, 824
MaeII ACGT 5 cut(s) 18, 53, 376, 461, 655
MaeIII GTNAC 1 cut(s) 479
MalI GATC 5 cut(s) 200, 551, 591, 678, 725
MboI GATC 5 cut(s) 198, 549, 589, 676, 723
MboII GAAGA 1 cut(s) 607
MflI RGATCY 1 cut(s) 589
MluCI AATT 2 cut(s) 62, 711
MlyI GAGTC 1 cut(s) 212
MmeI TCCRAC 2 cut(s) 210, 638
MnlI CCTC 5 cut(s) 158, 338, 341, 344, 680
Mph1103I ATGCAT 1 cut(s) 409
MseI TTAA 6 cut(s) 50, 113, 624, 638, 645, 732
MslI CAYNNNNRTG 1 cut(s) 402
MspI CCGG 5 cut(s) 253, 292, 419, 763, 797
MspR9I CCNGG 5 cut(s) 253, 292, 293, 420, 797
MvnI CGCG 5 cut(s) 270, 276, 485, 722, 741
MwoI GCNNNNNNNGC 2 cut(s) 482, 801
NciI CCSGG 5 cut(s) 253, 292, 293, 420, 797
NdeI CATATG 2 cut(s) 95, 308
NdeII GATC 5 cut(s) 198, 549, 589, 676, 723
NlaIII CATG 2 cut(s) 235, 407
NlaIV GGNNCC 4 cut(s) 417, 542, 591, 631
NsiI ATGCAT 1 cut(s) 409
NspV TTCGAA 1 cut(s) 444
PceI AGGCCT 1 cut(s) 327
PcsI WCGNNNNNNNCGW 1 cut(s) 267
PfeI GAWTC 2 cut(s) 36, 736
PkrI GCNGC 1 cut(s) 721
Ple19I CGATCG 1 cut(s) 201
PleI GAGTC 1 cut(s) 211
PpsI GAGTC 1 cut(s) 211
Ppu21I YACGTR 1 cut(s) 19
Psp1406I AACGTT 2 cut(s) 461, 655
PspN4I GGNNCC 4 cut(s) 417, 542, 591, 631
PspPI GGNCC 3 cut(s) 475, 541, 794
PsuI RGATCY 1 cut(s) 589
PvuI CGATCG 1 cut(s) 201
RsaI GTAC 5 cut(s) 21, 155, 179, 257, 533
RsaNI GTAC 5 cut(s) 20, 154, 178, 256, 532
RseI CAYNNNNRTG 1 cut(s) 402
SaqAI TTAA 6 cut(s) 50, 113, 624, 638, 645, 732
SatI GCNGC 1 cut(s) 720
Sau3AI GATC 5 cut(s) 198, 549, 589, 676, 723
Sau96I GGNCC 3 cut(s) 475, 541, 794
SchI GAGTC 1 cut(s) 212
ScrFI CCNGG 5 cut(s) 253, 292, 293, 420, 797
SfaNI GCATC 3 cut(s) 354, 756, 824
SfcI CTRYAG 1 cut(s) 535
SfuI TTCGAA 1 cut(s) 444
SinI GGWCC 1 cut(s) 541
SmaI CCCGGG 1 cut(s) 293
SmiMI CAYNNNNRTG 1 cut(s) 402
SmlI CTYRAG 1 cut(s) 429
SmoI CTYRAG 1 cut(s) 429
SnaBI TACGTA 1 cut(s) 19
Sse9I AATT 2 cut(s) 62, 711
SseBI AGGCCT 1 cut(s) 327
SsiI CCGC 7 cut(s) 69, 207, 249, 268, 274, 385, 720
SspI AATATT 1 cut(s) 496
StuI AGGCCT 1 cut(s) 327
StyD4I CCNGG 5 cut(s) 251, 290, 291, 418, 795
StyI CCWWGG 2 cut(s) 300, 340
TaaI ACNGT 5 cut(s) 122, 529, 579, 643, 694
TaiI ACGT 5 cut(s) 21, 56, 379, 464, 658
TaqI TCGA 3 cut(s) 201, 444, 515
TasI AATT 2 cut(s) 62, 711
TatI WGTACW 2 cut(s) 177, 531
TauI GCSGC 1 cut(s) 722
TfiI GAWTC 2 cut(s) 36, 736
Tru1I TTAA 6 cut(s) 50, 113, 624, 638, 645, 732
Tru9I TTAA 6 cut(s) 50, 113, 624, 638, 645, 732
TspDTI ATGAA 4 cut(s) 149, 248, 346, 386
TspGWI ACGGA 4 cut(s) 29, 537, 562, 677
TspMI CCCGGG 1 cut(s) 291
VpaK11BI GGWCC 1 cut(s) 541
XmaI CCCGGG 1 cut(s) 291
XmiI GTMKAC 1 cut(s) 373
Zsp2I ATGCAT 1 cut(s) 409
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.