pycom10g27480

Belongs to the peptidase A1 family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
Physical Location & Seq
Reverse (-)
28404808 .. 28405547
740 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 369 bp
ATGGCAGTTGTCTGGATGCAAACCCAGCTTAAGCAGAATTTGACTCAAGATCGTATTTTGAACTATGTCAATGAGCTTTGTGAAAAAATGCCAAACCCATTGGGACAATCAGCTGTAGACTGTGGAAAGCTTTCTTCTATGCCTTCCGTTTCCTTCACCATTGGCGGTAAAGTTTTTGAGCTCACTCCAGATGAGTACATACTTAAGGTCGGCGAGGGCTCTCAAGCTCAGTGCATAAGCGGGTTCACTAACATGGATATCCCTCCTCCCCGCGGACCTCTCTGGATCTTGGGAGATATCTTCATGGGTCGTTACCACACCGTGTTCGATGCTGGCAAAATGAGAGTCGGATTTGCAGAGGCAGCATAA

Protein Analysis

123

Amino Acids

13.45

Weight (kDa)

5.26

Isoelectric Point (pI)

32.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SapB_1 PF05184 1 - 31 2.1e-08 Saposin-like type B, region 1
Asp PF00026 17 - 121 2.7e-22 Eukaryotic aspartyl protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012724)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 117
AccII CGCG 1 cut(s) 273
AciI CCGC 4 cut(s) 165, 240, 271, 273
AclWI GGATC 1 cut(s) 293
AcsI RAATTY 1 cut(s) 37
AdeI CACNNNGTG 1 cut(s) 322
AfaI GTAC 1 cut(s) 197
AfiI CCNNNNNNNGG 1 cut(s) 272
AflII CTTAAG 2 cut(s) 29, 203
AgsI TTSAA 1 cut(s) 61
AluBI AGCT 6 cut(s) 28, 76, 113, 130, 181, 227
AluI AGCT 6 cut(s) 28, 76, 113, 130, 181, 227
Alw21I GWGCWC 1 cut(s) 183
AlwI GGATC 1 cut(s) 293
ApeKI GCWGC 1 cut(s) 362
ApoI RAATTY 1 cut(s) 37
ArsI GACNNNNNNTTYG 2 cut(s) 330, 362
Asp700I GAANNNNTTC 1 cut(s) 130
AspS9I GGNCC 1 cut(s) 275
AsuHPI GGTGA 1 cut(s) 148
AvaII GGWCC 1 cut(s) 275
BanII GRGCYC 2 cut(s) 183, 221
Bbv12I GWGCWC 1 cut(s) 183
BfmI CTRYAG 1 cut(s) 114
BfrI CTTAAG 2 cut(s) 29, 203
BisI GCNGC 1 cut(s) 363
BlsI GCNGC 1 cut(s) 364
Bme18I GGWCC 1 cut(s) 275
BmgT120I GGNCC 1 cut(s) 275
BmsI GCATC 2 cut(s) 6, 319
BpmI CTGGAG 1 cut(s) 171
BpuEI CTTGAG 2 cut(s) 30, 207
BsaJI CCNNGG 1 cut(s) 271
Bsc4I CCNNNNNNNGG 1 cut(s) 272
BseDI CCNNGG 1 cut(s) 271
BseGI GGATG 1 cut(s) 21
BseLI CCNNNNNNNGG 1 cut(s) 272
BseMII CTCAG 1 cut(s) 242
BseRI GAGGAG 1 cut(s) 255
BseYI CCCAGC 1 cut(s) 24
Bsh1236I CGCG 1 cut(s) 273
BsiHKAI GWGCWC 1 cut(s) 183
BslFI GGGAC 1 cut(s) 117
BslI CCNNNNNNNGG 1 cut(s) 272
BsmFI GGGAC 1 cut(s) 117
Bsp1286I GDGCHC 2 cut(s) 183, 221
Bsp143I GATC 2 cut(s) 49, 285
BspACI CCGC 4 cut(s) 165, 240, 271, 273
BspCNI CTCAG 1 cut(s) 241
BspFNI CGCG 1 cut(s) 273
BspPI GGATC 1 cut(s) 293
BspTI CTTAAG 2 cut(s) 29, 203
BssECI CCNNGG 1 cut(s) 271
BssMI GATC 2 cut(s) 49, 285
Bst4CI ACNGT 2 cut(s) 122, 322
BstAFI CTTAAG 2 cut(s) 29, 203
BstC8I GCNNGC 1 cut(s) 334
BstDEI CTNAG 1 cut(s) 228
BstDSI CCRYGG 1 cut(s) 271
BstF5I GGATG 1 cut(s) 21
BstFNI CGCG 1 cut(s) 273
BstKTI GATC 2 cut(s) 52, 288
BstMBI GATC 2 cut(s) 49, 285
BstMWI GCNNNNNNNGC 2 cut(s) 25, 362
BstSFI CTRYAG 1 cut(s) 114
BstUI CGCG 1 cut(s) 273
BstX2I RGATCY 1 cut(s) 285
BstYI RGATCY 1 cut(s) 285
BtgI CCRYGG 1 cut(s) 271
BtsCI GGATG 1 cut(s) 21
BtsIMutI CAGTG 1 cut(s) 236
Cac8I GCNNGC 1 cut(s) 334
Cfr13I GGNCC 1 cut(s) 275
Cfr42I CCGCGG 1 cut(s) 274
Csp6I GTAC 1 cut(s) 196
CviAII CATG 2 cut(s) 253, 304
CviJI RGCY 7 cut(s) 28, 76, 113, 130, 181, 219, 227
CviKI_1 RGCY 7 cut(s) 28, 76, 113, 130, 181, 219, 227
CviQI GTAC 1 cut(s) 196
DdeI CTNAG 1 cut(s) 228
DpnI GATC 2 cut(s) 51, 287
DpnII GATC 2 cut(s) 49, 285
DraIII CACNNNGTG 1 cut(s) 322
Ecl136II GAGCTC 1 cut(s) 181
Eco24I GRGCYC 2 cut(s) 183, 221
Eco32I GATATC 2 cut(s) 259, 298
Eco47I GGWCC 1 cut(s) 275
Eco53kI GAGCTC 1 cut(s) 181
EcoICRI GAGCTC 1 cut(s) 181
EcoRV GATATC 2 cut(s) 259, 298
EcoT38I GRGCYC 2 cut(s) 183, 221
FaeI CATG 2 cut(s) 256, 307
FaiI YATR 7 cut(s) 66, 140, 200, 236, 254, 305, 367
FaqI GGGAC 1 cut(s) 117
FatI CATG 2 cut(s) 252, 303
FauI CCCGC 2 cut(s) 233, 278
FblI GTMKAC 1 cut(s) 117
Fnu4HI GCNGC 1 cut(s) 363
FokI GGATG 1 cut(s) 28
FriOI GRGCYC 2 cut(s) 183, 221
Fsp4HI GCNGC 1 cut(s) 363
GluI GCNGC 1 cut(s) 363
GsaI CCCAGC 1 cut(s) 28
GsuI CTGGAG 1 cut(s) 171
Hin1II CATG 2 cut(s) 256, 307
HindIII AAGCTT 1 cut(s) 128
HinfI GANTC 2 cut(s) 43, 345
HphI GGTGA 1 cut(s) 148
Hpy166II GTNNAC 2 cut(s) 118, 246
Hpy188I TCNGA 1 cut(s) 350
Hpy188III TCNNGA 4 cut(s) 13, 47, 188, 283
Hpy8I GTNNAC 2 cut(s) 118, 246
HpyAV CCTTC 2 cut(s) 153, 163
HpyCH4III ACNGT 2 cut(s) 122, 322
HpyCH4V TGCA 3 cut(s) 19, 234, 356
HpyF10VI GCNNNNNNNGC 2 cut(s) 25, 362
HpyF3I CTNAG 1 cut(s) 228
Hsp92II CATG 2 cut(s) 256, 307
KspI CCGCGG 1 cut(s) 274
Kzo9I GATC 2 cut(s) 49, 285
LpnPI CCDG 4 cut(s) 38, 201, 268, 318
LweI GCATC 2 cut(s) 6, 319
MaeIII GTNAC 1 cut(s) 311
MalI GATC 2 cut(s) 51, 287
MboI GATC 2 cut(s) 49, 285
MboII GAAGA 2 cut(s) 126, 292
MflI RGATCY 1 cut(s) 285
MhlI GDGCHC 2 cut(s) 183, 221
MluCI AATT 1 cut(s) 37
MlyI GAGTC 2 cut(s) 37, 354
MmeI TCCRAC 1 cut(s) 328
MnlI CCTC 5 cut(s) 208, 273, 276, 288, 352
MroXI GAANNNNTTC 1 cut(s) 130
MseI TTAA 2 cut(s) 30, 204
MslI CAYNNNNRTG 1 cut(s) 251
MspA1I CMGCKG 2 cut(s) 113, 273
MspCI CTTAAG 2 cut(s) 29, 203
MvnI CGCG 1 cut(s) 273
MwoI GCNNNNNNNGC 2 cut(s) 25, 362
NdeII GATC 2 cut(s) 49, 285
NlaIII CATG 2 cut(s) 256, 307
PdmI GAANNNNTTC 1 cut(s) 130
PkrI GCNGC 1 cut(s) 364
PleI GAGTC 2 cut(s) 37, 353
PpsI GAGTC 2 cut(s) 37, 353
Psp124BI GAGCTC 1 cut(s) 183
PspFI CCCAGC 1 cut(s) 24
PspPI GGNCC 1 cut(s) 275
PsuI RGATCY 1 cut(s) 285
PvuII CAGCTG 1 cut(s) 113
RsaI GTAC 1 cut(s) 197
RsaNI GTAC 1 cut(s) 196
RseI CAYNNNNRTG 1 cut(s) 251
SacI GAGCTC 1 cut(s) 183
SacII CCGCGG 1 cut(s) 274
SaqAI TTAA 2 cut(s) 30, 204
SatI GCNGC 1 cut(s) 363
Sau3AI GATC 2 cut(s) 49, 285
Sau96I GGNCC 1 cut(s) 275
SchI GAGTC 2 cut(s) 37, 354
SduI GDGCHC 2 cut(s) 183, 221
SetI ASST 8 cut(s) 30, 78, 115, 132, 183, 210, 229, 280
SfaNI GCATC 2 cut(s) 6, 319
SfcI CTRYAG 1 cut(s) 114
Sfr303I CCGCGG 1 cut(s) 274
SgrBI CCGCGG 1 cut(s) 274
SinI GGWCC 1 cut(s) 275
SmiMI CAYNNNNRTG 1 cut(s) 251
SmlI CTYRAG 4 cut(s) 29, 45, 203, 222
SmoI CTYRAG 4 cut(s) 29, 45, 203, 222
Sse9I AATT 1 cut(s) 37
SsiI CCGC 4 cut(s) 165, 240, 271, 273
SstI GAGCTC 1 cut(s) 183
TaaI ACNGT 2 cut(s) 122, 322
TaqI TCGA 1 cut(s) 327
TasI AATT 1 cut(s) 37
TatI WGTACW 1 cut(s) 195
Tru1I TTAA 2 cut(s) 30, 204
Tru9I TTAA 2 cut(s) 30, 204
TscAI CASTG 1 cut(s) 236
TseI GCWGC 1 cut(s) 362
TspDTI ATGAA 1 cut(s) 292
TspGWI ACGGA 1 cut(s) 136
TspRI CASTG 1 cut(s) 236
Vha464I CTTAAG 2 cut(s) 29, 203
VpaK11BI GGWCC 1 cut(s) 275
XapI RAATTY 1 cut(s) 37
XmiI GTMKAC 1 cut(s) 117
XmnI GAANNNNTTC 1 cut(s) 130
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.