Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0012724

Physical Location & Seq

Genomic Coordinates Forward (+)

1440776 .. 1444446

Gene Structure 3671 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG020400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1293 bp

ATGGGAACCAGCTTCCAAGGGGTAGTGTTGTCTCTGTTCGTTTCGAGCTTGTTGTTGTCTCTGGTGTCCTCTGCAGCCCCACCCAGTGACGGGTTGTTTAGGATTGGACTGAAAAAGGTGAAGTTGGATGCGAATGAGCGGCTTGCTGCAGCGGTTGAATACAGGAATGGAGAGGATTTGAGGGGTTCGATTAGGAAGTATGGTTTCCCTTGTAATCCGGGAGACGCTGAGGGGGAGGATATTGATATTGTCAAATTAAAGAACTACTTGGATGCTCAGTACTATGGTGAGATAGCTATTGGCACTCCCCCTCAGCCGTTCACTGTGATTTTCGACACTGGCAGCTCTAATCTGTGGGTTCCGTCGAACAAGTGTCATTTCTCGGTTGCGTGCTACTTCCATGCCAAGTACAAGTCAAGCCAATCGAGTACATACAAGAAGAATGGGAAATCTGCTTCCATCCAGTATGGTACTGGAGCTATTTCAGGTTTCTTTAGTAATGACAATGTTAAAGTTGGGGACCTCGTTGTGAAAGACCAGGAATTTATTGAAGCAACTAGTGAGCCTGGTCTAACATTTTTGGCTGCCAAGTTTGATGGGCTATTAGGCCTTGGATTTCAAGAGATTTCAGTTGGAAATGCTGTCCCAGTGTGGTACAACATGATTAAGCAAGGGCTTATCAAGGAACCAGTGTTTTCCTTTTGGATGAACCGCAATGCAGCAGCACAAGAAGGTGGTGAACTTGTGTTTGGGGGAGTTGATCCCCATCACTTCAAGGGAAAGCACACATATGTTCCTGTAACACAGAAAGGCTATTGGCAGTTCGACATGGGTGATGTTCTTATTGGTGATAAACCAACTGGATATTGTGCTGGTGGTTGTCATGCAATTGCAGATTCTGGAACTTCTCTTTTGGCTGGTCCAACGACAGTGGTTACATTGATAAATAAAGCCATTGGAGCCGATGGGGTTGTTAGCCAGGAATGCAAGGCTGTTGTTCAACAGTATGGTCAAACCATTATGGAGCTGCTCTTGGCTGAGGCTCAACCAAAGAAGATCTGCTCCCAAATTGGAGTGTGCACCTTTGATGGGAGTCGTAGTGTTAGTATGGGCATTGAGAGTGTGGTGGATAAGAACCGTGGAAAATCTTCTGGAGTTCTTCATGATGCTTCATGCTCTGTTTGTGAGATGGCAGTTGTCTGGATGCAAAACCAGCTTAAGCAGAATCAGACCCAGGATTATATTTTGAACTATGTTAATGAGGTAAAAGTAGTGTGGCGGTGCTTGATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0010035 GO:0010038 GO:0016787 GO:0019538 GO:0030163 GO:0042221 GO:0043170 GO:0044238 GO:0046686 GO:0050896 GO:0070001 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04071 ko04140 ko04142 ko04210 ko04915 ko05152 map04071 map04140 map04142 map04210 map04915 map05152

Pfam Domains

Protein Families

Asp SapB_1 SapB_2

Protein Analysis

430

Amino Acids

46.55

Weight (kDa)

6.19

Isoelectric Point (pI)

31.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Asp	PF00026	93 - 326	3.7e-92	Eukaryotic aspartyl protease
TAXi_N	PF14543	94 - 252	5.5e-12	Xylanase inhibitor N-terminal
SapB_2	PF03489	327 - 360	1.1e-11	Saposin-like type B, region 2
SapB_1	PF05184	391 - 422	4.1e-10	Saposin-like type B, region 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012724)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04460 AT4G04460
fragaria_vesca	FvH4_3g01710
malus_domestica	MD05G1349700.v1.1 MD10G1324400.v1.1
prunus_persica	Prupe.4G017700_v2.0.a1 Prupe.4G017700_v2.0.a1
pyrus_communis	pycom05g31730 pycom10g27480
rosa_chinensis	RchiOBHm_Chr5g0002571
rosa_laevigata	RLG00000031040
rosa_roxburghii	Rroxscaffold_1G00073340
rosa_rugosa	Rorug04G0397000
rosa_samantha	Rh5AG020400 Rh5BG023100 Rh5CG022400 Rh5DG021500
rosa_wichuraiana	Rw5G001880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	139
AciI	CCGC	4 cut(s)	139, 152, 712, 1279
AclWI	GGATC	1 cut(s)	755
AcsI	RAATTY	1 cut(s)	542
AdeI	CACNNNGTG	1 cut(s)	86
AfaI	GTAC	5 cut(s)	281, 410, 430, 472, 656
AfiI	CCNNNNNNNGG	3 cut(s)	89, 90, 1089
AflII	CTTAAG	1 cut(s)	1217
AgsI	TTSAA	6 cut(s)	158, 551, 620, 775, 1001, 1249
AhlI	ACTAGT	1 cut(s)	557
AjnI	CCWGG	4 cut(s)	537, 565, 978, 1233
AjuI	GAANNNNNNNTTGG	2 cut(s)	732, 764
AluBI	AGCT	7 cut(s)	12, 48, 296, 345, 479, 1027, 1216
AluI	AGCT	7 cut(s)	12, 48, 296, 345, 479, 1027, 1216
Alw21I	GWGCWC	1 cut(s)	1082
Alw26I	GTCTC	3 cut(s)	36, 63, 216
Alw44I	GTGCAC	1 cut(s)	1078
AlwI	GGATC	1 cut(s)	755
AlwNI	CAGNNNCTG	1 cut(s)	899
AoxI	GGCC	1 cut(s)	607
ApaLI	GTGCAC	1 cut(s)	1078
ApeKI	GCWGC	8 cut(s)	74, 146, 149, 342, 584, 719, 722, 1027
ApoI	RAATTY	1 cut(s)	542
Asp700I	GAANNNNTTC	1 cut(s)	1147
AspS9I	GGNCC	2 cut(s)	520, 920
AsuC2I	CCSGG	1 cut(s)	219
AsuHPI	GGTGA	5 cut(s)	130, 299, 749, 845, 860
AvaII	GGWCC	2 cut(s)	520, 920
BaeGI	GKGCMC	1 cut(s)	1082
Bbv12I	GWGCWC	1 cut(s)	1082
BbvCI	CCTCAGC	3 cut(s)	228, 312, 1038
BbvI	GCAGC	8 cut(s)	86, 133, 161, 354, 571, 731, 734, 1014
BccI	CCATC	6 cut(s)	467, 590, 774, 959, 1082, 1183
BceAI	ACGGC	1 cut(s)	301
BciT130I	CCWGG	4 cut(s)	539, 567, 980, 1235
BcnI	CCSGG	1 cut(s)	219
BcoDI	GTCTC	3 cut(s)	36, 63, 216
BcuI	ACTAGT	1 cut(s)	557
BfaI	CTAG	1 cut(s)	558
BfmI	CTRYAG	2 cut(s)	72, 147
BfrI	CTTAAG	1 cut(s)	1217
BglII	AGATCT	1 cut(s)	1056
BisI	GCNGC	9 cut(s)	75, 140, 147, 150, 343, 585, 720, 723, 1028
BlsI	GCNGC	9 cut(s)	76, 141, 148, 151, 344, 586, 721, 724, 1029
BmcAI	AGTACT	1 cut(s)	281
Bme1390I	CCNGG	5 cut(s)	219, 539, 567, 980, 1235
Bme18I	GGWCC	2 cut(s)	520, 920
BmgT120I	GGNCC	2 cut(s)	520, 920
BmiI	GGNNCC	5 cut(s)	7, 360, 521, 687, 961
BmrFI	CCNGG	5 cut(s)	219, 539, 567, 980, 1235
BmrI	ACTGGG	2 cut(s)	78, 641
BmsI	GCATC	4 cut(s)	118, 262, 1156, 1194
BmuI	ACTGGG	2 cut(s)	78, 641
BpmI	CTGGAG	2 cut(s)	495, 1173
Bpu10I	CCTNAGC	3 cut(s)	228, 312, 1038
BpuMI	CCSGG	1 cut(s)	219
BsaBI	GATNNNNATC	1 cut(s)	765
BsaJI	CCNNGG	4 cut(s)	16, 610, 1138, 1233
BsaXI	ACNNNNNCTCC	2 cut(s)	1084, 1114
Bsc4I	CCNNNNNNNGG	3 cut(s)	89, 90, 1089
Bse1I	ACTGG	7 cut(s)	84, 343, 463, 478, 647, 689, 865
Bse3DI	GCAATG	1 cut(s)	721
Bse8I	GATNNNNATC	1 cut(s)	765
BseBI	CCWGG	4 cut(s)	539, 567, 980, 1235
BseDI	CCNNGG	4 cut(s)	16, 610, 1138, 1233
BseGI	GGATG	5 cut(s)	133, 277, 459, 711, 1209
BseJI	GATNNNNATC	1 cut(s)	765
BseLI	CCNNNNNNNGG	3 cut(s)	89, 90, 1089
BseMI	GCAATG	1 cut(s)	721
BseMII	CTCAG	4 cut(s)	219, 290, 326, 1029
BseNI	ACTGG	7 cut(s)	84, 343, 463, 478, 647, 689, 865
BseSI	GKGCMC	1 cut(s)	1082
BseXI	GCAGC	8 cut(s)	86, 133, 161, 354, 571, 731, 734, 1014
BshFI	GGCC	1 cut(s)	609
BsiHKAI	GWGCWC	1 cut(s)	1082
BsiSI	CCGG	1 cut(s)	218
BslFI	GGGAC	2 cut(s)	533, 629
BslI	CCNNNNNNNGG	3 cut(s)	89, 90, 1089
BsmAI	GTCTC	3 cut(s)	36, 63, 216
BsmBI	CGTCTC	1 cut(s)	216
BsmFI	GGGAC	2 cut(s)	533, 629
BsmI	GAATGC	1 cut(s)	989
BsnI	GGCC	1 cut(s)	609
Bsp1286I	GDGCHC	1 cut(s)	1082
Bsp143I	GATC	2 cut(s)	760, 1056
BspACI	CCGC	4 cut(s)	139, 152, 712, 1279
BspANI	GGCC	1 cut(s)	609
BspCNI	CTCAG	4 cut(s)	220, 289, 325, 1030
BspHI	TCATGA	1 cut(s)	1162
BspLI	GGNNCC	5 cut(s)	7, 360, 521, 687, 961
BspMAI	CTGCAG	2 cut(s)	76, 151
BspPI	GGATC	1 cut(s)	755
BspTI	CTTAAG	1 cut(s)	1217
BsrBI	CCGCTC	1 cut(s)	139
BsrDI	GCAATG	1 cut(s)	721
BsrI	ACTGG	7 cut(s)	84, 343, 463, 478, 647, 689, 865
BssECI	CCNNGG	4 cut(s)	16, 610, 1138, 1233
BssMI	GATC	2 cut(s)	760, 1056
BssT1I	CCWWGG	2 cut(s)	16, 610
Bst2UI	CCWGG	4 cut(s)	539, 567, 980, 1235
Bst4CI	ACNGT	4 cut(s)	325, 931, 1005, 1139
BstAFI	CTTAAG	1 cut(s)	1217
BstC8I	GCNNGC	2 cut(s)	144, 391
BstDEI	CTNAG	4 cut(s)	228, 276, 312, 1038
BstDSI	CCRYGG	1 cut(s)	1138
BstF5I	GGATG	5 cut(s)	133, 277, 459, 711, 1209
BstKTI	GATC	2 cut(s)	763, 1059
BstMAI	GTCTC	3 cut(s)	36, 63, 216
BstMBI	GATC	2 cut(s)	760, 1056
BstMWI	GCNNNNNNNGC	3 cut(s)	959, 984, 1213
BstNI	CCWGG	4 cut(s)	539, 567, 980, 1235
BstSCI	CCNGG	5 cut(s)	217, 537, 565, 978, 1233
BstSFI	CTRYAG	2 cut(s)	72, 147
BstSLI	GKGCMC	1 cut(s)	1082
BstV1I	GCAGC	8 cut(s)	86, 133, 161, 354, 571, 731, 734, 1014
BstX2I	RGATCY	1 cut(s)	1056
BstYI	RGATCY	1 cut(s)	1056
BsuRI	GGCC	1 cut(s)	609
BtgI	CCRYGG	1 cut(s)	1138
BtsCI	GGATG	5 cut(s)	133, 277, 459, 711, 1209
BtsIMutI	CAGTG	6 cut(s)	91, 321, 336, 654, 696, 936
Cac8I	GCNNGC	2 cut(s)	144, 391
CaiI	CAGNNNCTG	1 cut(s)	899
CciI	TCATGA	1 cut(s)	1162
Cfr13I	GGNCC	2 cut(s)	520, 920
CseI	GACGC	1 cut(s)	233
Csp6I	GTAC	5 cut(s)	280, 409, 429, 471, 655
CspCI	CAANNNNNGTGG	2 cut(s)	912, 947
CviAII	CATG	6 cut(s)	401, 661, 829, 884, 1163, 1173
CviQI	GTAC	5 cut(s)	280, 409, 429, 471, 655
DdeI	CTNAG	4 cut(s)	228, 276, 312, 1038
DpnI	GATC	2 cut(s)	762, 1058
DpnII	GATC	2 cut(s)	760, 1056
DraIII	CACNNNGTG	1 cut(s)	86
Eco130I	CCWWGG	2 cut(s)	16, 610
Eco147I	AGGCCT	1 cut(s)	609
Eco47I	GGWCC	2 cut(s)	520, 920
EcoO109I	RGGNCCY	1 cut(s)	520
EcoRII	CCWGG	4 cut(s)	537, 565, 978, 1233
EcoT14I	CCWWGG	2 cut(s)	16, 610
ErhI	CCWWGG	2 cut(s)	16, 610
Esp3I	CGTCTC	1 cut(s)	216
FaeI	CATG	6 cut(s)	404, 664, 832, 887, 1166, 1176
FalI	AAGNNNNNCTT	2 cut(s)	251, 283
FaqI	GGGAC	2 cut(s)	533, 629
FatI	CATG	6 cut(s)	400, 660, 828, 883, 1162, 1172
FauNDI	CATATG	1 cut(s)	790
Fnu4HI	GCNGC	9 cut(s)	75, 140, 147, 150, 343, 585, 720, 723, 1028
FokI	GGATG	5 cut(s)	140, 284, 446, 718, 1216
Fsp4HI	GCNGC	9 cut(s)	75, 140, 147, 150, 343, 585, 720, 723, 1028
FspBI	CTAG	1 cut(s)	558
GluI	GCNGC	9 cut(s)	75, 140, 147, 150, 343, 585, 720, 723, 1028
GsuI	CTGGAG	2 cut(s)	495, 1173
HaeIII	GGCC	1 cut(s)	609
HapII	CCGG	1 cut(s)	218
HgaI	GACGC	1 cut(s)	233
Hin1II	CATG	6 cut(s)	404, 664, 832, 887, 1166, 1176
HinfI	GANTC	3 cut(s)	896, 1093, 1225
HpaII	CCGG	1 cut(s)	218
HphI	GGTGA	5 cut(s)	130, 299, 749, 845, 860
Hpy166II	GTNNAC	3 cut(s)	321, 740, 1080
Hpy188I	TCNGA	1 cut(s)	1230
Hpy188III	TCNNGA	5 cut(s)	620, 900, 1152, 1163, 1201
Hpy8I	GTNNAC	3 cut(s)	321, 740, 1080
Hpy99I	CGWCG	1 cut(s)	367
HpyAV	CCTTC	1 cut(s)	725
HpyCH4III	ACNGT	4 cut(s)	325, 931, 1005, 1139
HpyCH4V	TGCA	8 cut(s)	74, 149, 719, 887, 893, 987, 1080, 1207
HpyF10VI	GCNNNNNNNGC	3 cut(s)	959, 984, 1213
HpyF3I	CTNAG	4 cut(s)	228, 276, 312, 1038
Hsp92II	CATG	6 cut(s)	404, 664, 832, 887, 1166, 1176
Kzo9I	GATC	2 cut(s)	760, 1056
LmnI	GCTCC	4 cut(s)	476, 959, 1024, 1067
Lsp1109I	GCAGC	8 cut(s)	86, 133, 161, 354, 571, 731, 734, 1014
LweI	GCATC	4 cut(s)	118, 262, 1156, 1194
MaeI	CTAG	1 cut(s)	558
MaeIII	GTNAC	3 cut(s)	86, 799, 934
MalI	GATC	2 cut(s)	762, 1058
MbiI	CCGCTC	1 cut(s)	139
MboI	GATC	2 cut(s)	760, 1056
MboII	GAAGA	4 cut(s)	451, 1066, 1140, 1151
MfeI	CAATTG	1 cut(s)	888
MflI	RGATCY	1 cut(s)	1056
MhlI	GDGCHC	1 cut(s)	1082
MluCI	AATT	4 cut(s)	254, 542, 888, 1068
MlyI	GAGTC	1 cut(s)	1102
MmeI	TCCRAC	3 cut(s)	105, 613, 947
MnlI	CCTC	9 cut(s)	79, 166, 174, 223, 229, 321, 533, 1033, 1255
MroXI	GAANNNNTTC	1 cut(s)	1147
MseI	TTAA	6 cut(s)	257, 510, 666, 1218, 1257, 1291
MslI	CAYNNNNRTG	1 cut(s)	789
MspA1I	CMGCKG	1 cut(s)	152
MspCI	CTTAAG	1 cut(s)	1217
MspI	CCGG	1 cut(s)	218
MspR9I	CCNGG	5 cut(s)	219, 539, 567, 980, 1235
MunI	CAATTG	1 cut(s)	888
Mva1269I	GAATGC	1 cut(s)	989
MvaI	CCWGG	4 cut(s)	539, 567, 980, 1235
MwoI	GCNNNNNNNGC	3 cut(s)	959, 984, 1213
NciI	CCSGG	1 cut(s)	219
NdeI	CATATG	1 cut(s)	790
NdeII	GATC	2 cut(s)	760, 1056
NlaIII	CATG	6 cut(s)	404, 664, 832, 887, 1166, 1176
NlaIV	GGNNCC	5 cut(s)	7, 360, 521, 687, 961
NmuCI	GTSAC	1 cut(s)	86
PagI	TCATGA	1 cut(s)	1162
PceI	AGGCCT	1 cut(s)	609
PctI	GAATGC	1 cut(s)	989
PdmI	GAANNNNTTC	1 cut(s)	1147
PfeI	GAWTC	2 cut(s)	896, 1225
PfoI	TCCNGGA	1 cut(s)	217
PkrI	GCNGC	9 cut(s)	76, 141, 148, 151, 344, 586, 721, 724, 1029
PleI	GAGTC	1 cut(s)	1101
PpsI	GAGTC	1 cut(s)	1101
PpuMI	RGGWCCY	1 cut(s)	520
Psp5II	RGGWCCY	1 cut(s)	520
Psp6I	CCWGG	4 cut(s)	537, 565, 978, 1233
PspGI	CCWGG	4 cut(s)	537, 565, 978, 1233
PspN4I	GGNNCC	5 cut(s)	7, 360, 521, 687, 961
PspPI	GGNCC	2 cut(s)	520, 920
PspPPI	RGGWCCY	1 cut(s)	520
PstI	CTGCAG	2 cut(s)	76, 151
PstNI	CAGNNNCTG	1 cut(s)	899
PsuI	RGATCY	1 cut(s)	1056
RsaI	GTAC	5 cut(s)	281, 410, 430, 472, 656
RsaNI	GTAC	5 cut(s)	280, 409, 429, 471, 655
RseI	CAYNNNNRTG	1 cut(s)	789
SaqAI	TTAA	6 cut(s)	257, 510, 666, 1218, 1257, 1291
SatI	GCNGC	9 cut(s)	75, 140, 147, 150, 343, 585, 720, 723, 1028
Sau3AI	GATC	2 cut(s)	760, 1056
Sau96I	GGNCC	2 cut(s)	520, 920
ScaI	AGTACT	1 cut(s)	281
SchI	GAGTC	1 cut(s)	1102
ScrFI	CCNGG	5 cut(s)	219, 539, 567, 980, 1235
SduI	GDGCHC	1 cut(s)	1082
SfaNI	GCATC	4 cut(s)	118, 262, 1156, 1194
SfcI	CTRYAG	2 cut(s)	72, 147
SinI	GGWCC	2 cut(s)	520, 920
SmiMI	CAYNNNNRTG	1 cut(s)	789
SmlI	CTYRAG	1 cut(s)	1217
SmoI	CTYRAG	1 cut(s)	1217
SpeI	ACTAGT	1 cut(s)	557
Sse9I	AATT	4 cut(s)	254, 542, 888, 1068
SseBI	AGGCCT	1 cut(s)	609
SsiI	CCGC	4 cut(s)	139, 152, 712, 1279
SspMI	CTAG	1 cut(s)	558
StuI	AGGCCT	1 cut(s)	609
StyD4I	CCNGG	5 cut(s)	217, 537, 565, 978, 1233
StyI	CCWWGG	2 cut(s)	16, 610
TaaI	ACNGT	4 cut(s)	325, 931, 1005, 1139
TaqI	TCGA	6 cut(s)	44, 188, 333, 365, 425, 825
TasI	AATT	4 cut(s)	254, 542, 888, 1068
TatI	WGTACW	3 cut(s)	279, 408, 428
TauI	GCSGC	1 cut(s)	142
TfiI	GAWTC	2 cut(s)	896, 1225
Tru1I	TTAA	6 cut(s)	257, 510, 666, 1218, 1257, 1291
Tru9I	TTAA	6 cut(s)	257, 510, 666, 1218, 1257, 1291
TscAI	CASTG	6 cut(s)	91, 328, 343, 654, 696, 936
TseFI	GTSAC	1 cut(s)	86
TseI	GCWGC	8 cut(s)	74, 146, 149, 342, 584, 719, 722, 1027
Tsp45I	GTSAC	1 cut(s)	86
TspDTI	ATGAA	3 cut(s)	722, 1151, 1161
TspGWI	ACGGA	1 cut(s)	351
TspRI	CASTG	6 cut(s)	91, 328, 343, 654, 696, 936
Vha464I	CTTAAG	1 cut(s)	1217
VneI	GTGCAC	1 cut(s)	1078
VpaK11BI	GGWCC	2 cut(s)	520, 920
XapI	RAATTY	1 cut(s)	542
XcmI	CCANNNNNNNNNTGG	1 cut(s)	470
XmnI	GAANNNNTTC	1 cut(s)	1147
XspI	CTAG	1 cut(s)	558
ZrmI	AGTACT	1 cut(s)	281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.