Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0012667

Physical Location & Seq

Genomic Coordinates Reverse (-)

56323515 .. 56327863

Gene Structure 4349 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0397000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGGGAAGGGTAAAGCTAAAGATAAAGAGGTTGGAGAATACAAATGGGCGTCAAGCAACTTATGCCAAAAGGAAGCATGGCATCATGAAAAAGGCTAATGAATTATCTATACTATGTGACATAGACATTGTCCTTCTTATGTTTTCCCCGACTGGGAAGCCTTCTTTATGCAGCGGAAAACGCAGTAGCATTGAAGAGGTTATAGCAAAGTTTTCCCAACTAACTCCACAGGAAAGAGCTAAAAGGAAACTGGAAAGCCTTGAAGCACTGAAGAAAACATTCAAGAAGTTGGACCATGATGTGAATATACAAGAATTTTTGGGTACGAGTTCTCAAACGGTTGAGGACTTGAGTAACCAATCTAGGTTATTGCAAACCCAACTTTCCGAAATAAAGAAGAGATTAAGCTGTTGGATGAACCCTGATAAGATCAACAGTGTAGATCAGTTGGGGCAAATGGAAGATTCAATTAGAGAATCGCTTAACCAGATTCGAACACATAAGGAAAACTTACAAAAACAACAACTAATGTCATTAGAATGCACCAGTCAGTTCCAAAATGGATTGCATATACCCTTCAGCATGAGTACTGAGCAACAACTCCAGCCTCTGCCATGGATTCCTAGTAATGAAAACCGGCATATCGTTTTACCAGAGGACCCGAACTTGCTTCCTCATAGGGATATAGAATGTTCTGCAAGTTCCTCCTTTGGCAGTTACTCTGGTTACCTTGGGACAGGAAAAAGTCCAGAGATTTCCAACTCTGGTCAGGAAAACGGTATTCTAAATGACTTGAGCAGAACTGCGCCACTGAGGCTACAGCTGGGCGGGCAGTTTTCCTCCTACCTTCCATACAATCTCAATATGTTGACCGATACAAAATTTCAACAACCCACAGAAATGAGTCCTCAAGAAAACCCTGTGGAATATCATGTTAATGGAAGCTTTGAAGCTCCTAGACCTGATTTTTTCGCTACCCAGCATAGTTGGGCATCTACATCTGGTCCCTGTGCTGTTACTATGTTTGACGAGCATTTATATTCCCAGCAGACAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006996 GO:0007010 GO:0007017 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009893 GO:0009987 GO:0010562 GO:0010604 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0023014 GO:0023052 GO:0030865 GO:0031098 GO:0031122 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0033554 GO:0033674 GO:0035556 GO:0036211 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043412 GO:0043549 GO:0043622 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071840 GO:0080090 GO:0097435 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

Pkinase

Protein Analysis

352

Amino Acids

39.84

Weight (kDa)

7.11

Isoelectric Point (pI)

60.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 54	5e-20	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Orthologous Genes (Group: OG0012667)

Species	Orthologous Gene IDs
prunus_persica	Prupe.4G018000_v2.0.a1 Prupe.4G018000_v2.0.a1
pyrus_communis	pycom10g27460
rosa_laevigata	RLG00000031043
rosa_multiflora	Rmu_sc0009084.1_g000005
rosa_roxburghii	Rroxscaffold_1G00073290 Rroxscaffold_1G00073300 Rroxscaffold_1G00073320
rosa_rugosa	Rorug04G0397000 Rorug04G0397100 Rorug04G0397200
rosa_samantha	Rh5AG020600 Rh5AG020800 Rh5BG023400 Rh5CG022600 Rh5CG022800 Rh5DG021700
rosa_wichuraiana	Rw5G001900 Rw5G001920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	174, 828
AcsI	RAATTY	2 cut(s)	314, 881
AcuI	CTGAAG	2 cut(s)	290, 562
AcyI	GRCGYC	1 cut(s)	49
AfaI	GTAC	2 cut(s)	325, 589
AfiI	CCNNNNNNNGG	1 cut(s)	153
AgsI	TTSAA	6 cut(s)	194, 263, 283, 468, 887, 950
AluBI	AGCT	6 cut(s)	16, 239, 408, 823, 945, 953
AluI	AGCT	6 cut(s)	16, 239, 408, 823, 945, 953
AlwNI	CAGNNNCTG	1 cut(s)	610
ApeKI	GCWGC	1 cut(s)	171
ApoI	RAATTY	2 cut(s)	314, 881
Asp700I	GAANNNNTTC	1 cut(s)	278
AspLEI	GCGC	1 cut(s)	808
AspS9I	GGNCC	3 cut(s)	292, 658, 1004
AsuII	TTCGAA	1 cut(s)	493
AvaII	GGWCC	3 cut(s)	292, 658, 1004
BbvI	GCAGC	1 cut(s)	183
BfaI	CTAG	3 cut(s)	363, 624, 957
BfmI	CTRYAG	1 cut(s)	818
BglI	GCCNNNNNGGC	1 cut(s)	814
BisI	GCNGC	1 cut(s)	172
BlsI	GCNGC	1 cut(s)	173
BmcAI	AGTACT	1 cut(s)	589
Bme18I	GGWCC	3 cut(s)	292, 658, 1004
BmgT120I	GGNCC	3 cut(s)	292, 658, 1004
BmiI	GGNNCC	2 cut(s)	660, 1006
BmrI	ACTGGG	1 cut(s)	162
BmsI	GCATC	2 cut(s)	90, 1001
BmuI	ACTGGG	1 cut(s)	162
BpmI	CTGGAG	1 cut(s)	587
Bpu14I	TTCGAA	1 cut(s)	493
BpuEI	CTTGAG	3 cut(s)	370, 814, 894
BsaHI	GRCGYC	1 cut(s)	49
BsaJI	CCNNGG	2 cut(s)	614, 730
Bsc4I	CCNNNNNNNGG	1 cut(s)	153
Bse118I	RCCGGY	1 cut(s)	636
Bse1I	ACTGG	3 cut(s)	157, 255, 546
BseDI	CCNNGG	2 cut(s)	614, 730
BseGI	GGATG	1 cut(s)	420
BseLI	CCNNNNNNNGG	1 cut(s)	153
BseMII	CTCAG	2 cut(s)	582, 803
BseNI	ACTGG	3 cut(s)	157, 255, 546
BseXI	GCAGC	1 cut(s)	183
BseYI	CCCAGC	3 cut(s)	823, 978, 1044
BsiSI	CCGG	1 cut(s)	637
BslFI	GGGAC	2 cut(s)	748, 990
BslI	CCNNNNNNNGG	1 cut(s)	153
BsmFI	GGGAC	2 cut(s)	748, 990
BsmI	GAATGC	1 cut(s)	545
Bsp119I	TTCGAA	1 cut(s)	493
Bsp143I	GATC	2 cut(s)	429, 442
Bsp19I	CCATGG	1 cut(s)	614
BspACI	CCGC	2 cut(s)	174, 828
BspCNI	CTCAG	2 cut(s)	583, 804
BspHI	TCATGA	1 cut(s)	84
BspLI	GGNNCC	2 cut(s)	660, 1006
BspT104I	TTCGAA	1 cut(s)	493
BsrFI	RCCGGY	1 cut(s)	636
BsrI	ACTGG	3 cut(s)	157, 255, 546
BssAI	RCCGGY	1 cut(s)	636
BssECI	CCNNGG	2 cut(s)	614, 730
BssMI	GATC	2 cut(s)	429, 442
BssNI	GRCGYC	1 cut(s)	49
BssT1I	CCWWGG	2 cut(s)	614, 730
Bst4CI	ACNGT	3 cut(s)	340, 437, 779
Bst6I	CTCTTC	2 cut(s)	189, 392
BstACI	GRCGYC	1 cut(s)	49
BstAPI	GCANNNNNTGC	1 cut(s)	62
BstBI	TTCGAA	1 cut(s)	493
BstC8I	GCNNGC	1 cut(s)	830
BstDEI	CTNAG	2 cut(s)	591, 812
BstDSI	CCRYGG	1 cut(s)	614
BstEII	GGTNACC	1 cut(s)	725
BstF5I	GGATG	1 cut(s)	420
BstHHI	GCGC	1 cut(s)	808
BstKTI	GATC	2 cut(s)	432, 445
BstMBI	GATC	2 cut(s)	429, 442
BstMWI	GCNNNNNNNGC	4 cut(s)	62, 180, 814, 829
BstPI	GGTNACC	1 cut(s)	725
BstSFI	CTRYAG	1 cut(s)	818
BstV1I	GCAGC	1 cut(s)	183
BtgI	CCRYGG	1 cut(s)	614
BtsCI	GGATG	1 cut(s)	420
BtsIMutI	CAGTG	3 cut(s)	266, 442, 809
Cac8I	GCNNGC	1 cut(s)	830
CaiI	CAGNNNCTG	1 cut(s)	610
CciI	TCATGA	1 cut(s)	84
CfoI	GCGC	1 cut(s)	808
Cfr10I	RCCGGY	1 cut(s)	636
Cfr13I	GGNCC	3 cut(s)	292, 658, 1004
CseI	GACGC	1 cut(s)	38
Csp6I	GTAC	2 cut(s)	324, 588
CviAII	CATG	6 cut(s)	77, 85, 296, 583, 615, 932
CviQI	GTAC	2 cut(s)	324, 588
DdeI	CTNAG	2 cut(s)	591, 812
DpnI	GATC	2 cut(s)	431, 444
DpnII	GATC	2 cut(s)	429, 442
Eam1104I	CTCTTC	2 cut(s)	189, 392
EarI	CTCTTC	2 cut(s)	189, 392
Eco130I	CCWWGG	2 cut(s)	614, 730
Eco47I	GGWCC	3 cut(s)	292, 658, 1004
Eco57I	CTGAAG	2 cut(s)	290, 562
Eco91I	GGTNACC	1 cut(s)	725
EcoO109I	RGGNCCY	1 cut(s)	658
EcoO65I	GGTNACC	1 cut(s)	725
EcoT14I	CCWWGG	2 cut(s)	614, 730
ErhI	CCWWGG	2 cut(s)	614, 730
FaeI	CATG	6 cut(s)	80, 88, 299, 586, 618, 935
FalI	AAGNNNNNCTT	2 cut(s)	494, 526
FaqI	GGGAC	2 cut(s)	748, 990
FatI	CATG	6 cut(s)	76, 84, 295, 582, 614, 931
FauI	CCCGC	1 cut(s)	821
Fnu4HI	GCNGC	1 cut(s)	172
FokI	GGATG	1 cut(s)	427
Fsp4HI	GCNGC	1 cut(s)	172
FspBI	CTAG	3 cut(s)	363, 624, 957
GlaI	GCGC	1 cut(s)	807
GluI	GCNGC	1 cut(s)	172
GsaI	CCCAGC	3 cut(s)	827, 982, 1048
GsuI	CTGGAG	1 cut(s)	587
HapII	CCGG	1 cut(s)	637
HgaI	GACGC	1 cut(s)	38
HhaI	GCGC	1 cut(s)	808
Hin1I	GRCGYC	1 cut(s)	49
Hin1II	CATG	6 cut(s)	80, 88, 299, 586, 618, 935
Hin6I	GCGC	1 cut(s)	806
HinP1I	GCGC	1 cut(s)	806
HincII	GTYRAC	1 cut(s)	870
HindII	GTYRAC	1 cut(s)	870
HindIII	AAGCTT	1 cut(s)	943
HinfI	GANTC	5 cut(s)	464, 476, 490, 619, 904
HpaII	CCGG	1 cut(s)	637
Hpy166II	GTNNAC	1 cut(s)	870
Hpy188I	TCNGA	1 cut(s)	388
Hpy188III	TCNNGA	5 cut(s)	85, 283, 749, 770, 911
Hpy8I	GTNNAC	1 cut(s)	870
HpyAV	CCTTC	4 cut(s)	143, 171, 586, 857
HpyCH4III	ACNGT	3 cut(s)	340, 437, 779
HpyCH4V	TGCA	5 cut(s)	171, 373, 543, 568, 698
HpyF10VI	GCNNNNNNNGC	4 cut(s)	62, 180, 814, 829
HpyF3I	CTNAG	2 cut(s)	591, 812
Hsp92I	GRCGYC	1 cut(s)	49
Hsp92II	CATG	6 cut(s)	80, 88, 299, 586, 618, 935
HspAI	GCGC	1 cut(s)	806
Kzo9I	GATC	2 cut(s)	429, 442
LmnI	GCTCC	1 cut(s)	958
Lsp1109I	GCAGC	1 cut(s)	183
LweI	GCATC	2 cut(s)	90, 1001
MaeI	CTAG	3 cut(s)	363, 624, 957
MaeIII	GTNAC	5 cut(s)	116, 353, 716, 725, 1015
MalI	GATC	2 cut(s)	431, 444
MboI	GATC	2 cut(s)	429, 442
MboII	GAAGA	4 cut(s)	206, 283, 409, 473
MluCI	AATT	4 cut(s)	101, 314, 468, 881
MlyI	GAGTC	1 cut(s)	913
MmeI	TCCRAC	4 cut(s)	12, 270, 392, 783
MroXI	GAANNNNTTC	1 cut(s)	278
MseI	TTAA	3 cut(s)	404, 483, 936
MslI	CAYNNNNRTG	3 cut(s)	538, 899, 936
MspA1I	CMGCKG	2 cut(s)	174, 823
MspI	CCGG	1 cut(s)	637
Mva1269I	GAATGC	1 cut(s)	545
MwoI	GCNNNNNNNGC	4 cut(s)	62, 180, 814, 829
NcoI	CCATGG	1 cut(s)	614
NdeII	GATC	2 cut(s)	429, 442
NlaIII	CATG	6 cut(s)	80, 88, 299, 586, 618, 935
NlaIV	GGNNCC	2 cut(s)	660, 1006
NmuCI	GTSAC	1 cut(s)	116
NspV	TTCGAA	1 cut(s)	493
PagI	TCATGA	1 cut(s)	84
PctI	GAATGC	1 cut(s)	545
PdmI	GAANNNNTTC	1 cut(s)	278
PfeI	GAWTC	4 cut(s)	464, 476, 490, 619
PflFI	GACNNNGTC	1 cut(s)	128
PkrI	GCNGC	1 cut(s)	173
PleI	GAGTC	1 cut(s)	912
PpsI	GAGTC	1 cut(s)	912
PpuMI	RGGWCCY	1 cut(s)	658
Psp5II	RGGWCCY	1 cut(s)	658
PspEI	GGTNACC	1 cut(s)	725
PspFI	CCCAGC	3 cut(s)	823, 978, 1044
PspN4I	GGNNCC	2 cut(s)	660, 1006
PspPI	GGNCC	3 cut(s)	292, 658, 1004
PspPPI	RGGWCCY	1 cut(s)	658
PstNI	CAGNNNCTG	1 cut(s)	610
PsyI	GACNNNGTC	1 cut(s)	128
PvuII	CAGCTG	1 cut(s)	823
RsaI	GTAC	2 cut(s)	325, 589
RsaNI	GTAC	2 cut(s)	324, 588
RseI	CAYNNNNRTG	3 cut(s)	538, 899, 936
SaqAI	TTAA	3 cut(s)	404, 483, 936
SatI	GCNGC	1 cut(s)	172
Sau3AI	GATC	2 cut(s)	429, 442
Sau96I	GGNCC	3 cut(s)	292, 658, 1004
ScaI	AGTACT	1 cut(s)	589
SchI	GAGTC	1 cut(s)	913
SfaNI	GCATC	2 cut(s)	90, 1001
SfcI	CTRYAG	1 cut(s)	818
SfuI	TTCGAA	1 cut(s)	493
SinI	GGWCC	3 cut(s)	292, 658, 1004
SmiMI	CAYNNNNRTG	3 cut(s)	538, 899, 936
SmlI	CTYRAG	3 cut(s)	349, 793, 909
SmoI	CTYRAG	3 cut(s)	349, 793, 909
Sse9I	AATT	4 cut(s)	101, 314, 468, 881
SsiI	CCGC	2 cut(s)	174, 828
SspMI	CTAG	3 cut(s)	363, 624, 957
StyI	CCWWGG	2 cut(s)	614, 730
TaaI	ACNGT	3 cut(s)	340, 437, 779
TaqI	TCGA	1 cut(s)	493
TaqII	GACCGA	1 cut(s)	887
TasI	AATT	4 cut(s)	101, 314, 468, 881
TatI	WGTACW	1 cut(s)	587
TfiI	GAWTC	4 cut(s)	464, 476, 490, 619
Tru1I	TTAA	3 cut(s)	404, 483, 936
Tru9I	TTAA	3 cut(s)	404, 483, 936
TscAI	CASTG	3 cut(s)	273, 442, 816
TseFI	GTSAC	1 cut(s)	116
TseI	GCWGC	1 cut(s)	171
Tsp45I	GTSAC	1 cut(s)	116
TspDTI	ATGAA	4 cut(s)	101, 114, 431, 645
TspRI	CASTG	3 cut(s)	273, 442, 816
Tth111I	GACNNNGTC	1 cut(s)	128
VpaK11BI	GGWCC	3 cut(s)	292, 658, 1004
XapI	RAATTY	2 cut(s)	314, 881
XmnI	GAANNNNTTC	1 cut(s)	278
XspI	CTAG	3 cut(s)	363, 624, 957
ZrmI	AGTACT	1 cut(s)	589

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.