Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0012667

Physical Location & Seq

Genomic Coordinates Reverse (-)

840356 .. 843216

Gene Structure 2861 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G018000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1521 bp

ATGAACATGTTAGCTATGAGGAGTAATCATGTTCCGTTGTTTTGGCTTATTATTGTTAAGAGCATGCTCAGGTTGTTCTGCTTTCTACACTATGTTAGGATGATTCAGAAGCCTTTGTCGCGTGTCGTCGGCTACTCCCAATTCTTTGACTACTTTATTGATTTAATTCTCATTGGATTATGCATATTCCTTGATTTTGTGATGCACGAAGTACGTCAGGATATCAGAAAACTTCAGAGACAAACAAGGTTGGTGGCAAAACTGCGCAAGAGATTTGAAGAGAACGACAATGGTTTGCTTGGAGAAAAAGAAAATCAATTGCAGTTTTTGAGAAGAAAAATGAACAATGTAGAATATGAACTTAGGATCAAAACCAAAGAGCTGATTGTTGCAGATGTTGATAGTTCTTCTCTAAGTAACTTATTTAATAAGTTACATATTGAGCAAGGTATTGTAGTGCAGGAAAATCAAAGTCTGCAGAATGAGTTGAAATCATCAAACATCAAACTTCAACAGCTACAATATGAACTTGACGAAATGACACAAGAGGTTTTGGCAGGAAATAACTATGCTAGTGCGTTACAGAAAAGATTCGAAGAGGCTTTCCTCAACCACAATCGTTTATTTGCTGAAAAAGAGAAGCAATTGCAATCATTGAGAACAATGCTGGACCAACTAGAATTTGAACTTCAAAATAAAGAGAGAGAGGTTAATGTTGCAGAAGCCAATAATGATGTTCTAAGGAACCTATATGAAGAGTTACTTGAGGAAAACCAAAGTTTGAAGAGCCAGTTGCAGTCATATGACAACAAGTTCAAACAGCTAGAATCTGAAATCGACAAGAAGACAGAGTTTGATCATGTTTGCGAATTGCAGTTCTGGAAAGCAACTCTCAGCCAAGTAGAATATGACCTTAGGATGAAAACCGAAGAGCTTGATGTTGCGGAAGAGAATATTACTTCTCTAGGTAACTTATTGAAAGAGTTGCATGCTGAGAAAGATATTGTAGTGCAAGAAAACCAACAACTACAATATGAACTTTGCAGAAGGACACAAGAGTTTTTGGCTGAAAATAATAATGTTAGTGCTTTACAGAAAAGATATGAAGAGGCTTCCGTCAACCACTGTGGTATACTTGCAGAAAAAGAGAAGCAATTGCAGTCATTGAGAATAAGGCTGGACCAACTAGAATTTGAACTTGAGAACCAAGAGAGAGAGGTTTGTGTTGCAGAAGCCAATACTGATGTTGTAAGGAAACTATTTGGAGAGTTACTCATTGAGCAAGGTGTTGTAGTTGAGGAAAACCAAAGCTTGAAGAGCCAGTTGCAGTCATATGAAAACAAGCTTAAACAACTAGAATATGAAGCTGAGACAGAGACAGAAGCTAATATTATTGATCTAAAGGAAGATTTAGAAGATGATATTCTTGAGTATGATCAGTTACTTGAAGAGACCAAGATCTTAAGAAGCCAATTAGAATGGGAGATTGTCACAGACTCACAAAGTAGCCAACAAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

507

Amino Acids

59.91

Weight (kDa)

4.8

Isoelectric Point (pI)

61.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012667)

Species	Orthologous Gene IDs
prunus_persica	Prupe.4G018000_v2.0.a1 Prupe.4G018000_v2.0.a1
pyrus_communis	pycom10g27460
rosa_laevigata	RLG00000031043
rosa_multiflora	Rmu_sc0009084.1_g000005
rosa_roxburghii	Rroxscaffold_1G00073290 Rroxscaffold_1G00073300 Rroxscaffold_1G00073320
rosa_rugosa	Rorug04G0397000 Rorug04G0397100 Rorug04G0397200
rosa_samantha	Rh5AG020600 Rh5AG020800 Rh5BG023400 Rh5CG022600 Rh5CG022800 Rh5DG021700
rosa_wichuraiana	Rw5G001900 Rw5G001920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	266
AccI	GTMKAC	1 cut(s)	1132
AccII	CGCG	1 cut(s)	121
AciI	CCGC	1 cut(s)	944
AclWI	GGATC	1 cut(s)	374
AcsI	RAATTY	2 cut(s)	680, 1190
AcuI	CTGAAG	1 cut(s)	218
AfaI	GTAC	1 cut(s)	213
AflII	CTTAAG	1 cut(s)	1462
AflIII	ACRYGT	1 cut(s)	6
AluBI	AGCT	9 cut(s)	14, 382, 517, 823, 934, 1311, 1345, 1367, 1385
AluI	AGCT	9 cut(s)	14, 382, 517, 823, 934, 1311, 1345, 1367, 1385
Alw26I	GTCTC	4 cut(s)	232, 1364, 1370, 1445
AlwI	GGATC	1 cut(s)	374
ApoI	RAATTY	2 cut(s)	680, 1190
Asp700I	GAANNNNTTC	1 cut(s)	590
AspLEI	GCGC	1 cut(s)	267
AspS9I	GGNCC	2 cut(s)	670, 1180
AsuII	TTCGAA	1 cut(s)	594
AvaII	GGWCC	2 cut(s)	670, 1180
AxyI	CCTNAGG	1 cut(s)	914
BbsI	GAAGAC	1 cut(s)	851
BclI	TGATCA	2 cut(s)	856, 1435
BcoDI	GTCTC	4 cut(s)	232, 1364, 1370, 1445
BfaI	CTAG	6 cut(s)	573, 677, 824, 965, 1187, 1355
BfmI	CTRYAG	1 cut(s)	476
BfrI	CTTAAG	1 cut(s)	1462
BglII	AGATCT	1 cut(s)	1458
Bme18I	GGWCC	2 cut(s)	670, 1180
BmgT120I	GGNCC	2 cut(s)	670, 1180
BmiI	GGNNCC	1 cut(s)	746
BmsI	GCATC	1 cut(s)	192
BpiI	GAAGAC	1 cut(s)	851
BplI	GAGNNNNNCTC	2 cut(s)	1257, 1289
Bpu10I	CCTNAGC	1 cut(s)	68
Bpu14I	TTCGAA	1 cut(s)	594
BpuEI	CTTGAG	3 cut(s)	785, 1220, 1448
BsaI	GGTCTC	1 cut(s)	1445
Bse1I	ACTGG	2 cut(s)	790, 1321
Bse21I	CCTNAGG	1 cut(s)	914
BseGI	GGATG	2 cut(s)	105, 924
BseMII	CTCAG	4 cut(s)	82, 907, 984, 1359
BseNI	ACTGG	2 cut(s)	790, 1321
BseRI	GAGGAG	1 cut(s)	34
BsgI	GTGCAG	1 cut(s)	479
Bsh1236I	CGCG	1 cut(s)	121
BsmAI	GTCTC	4 cut(s)	232, 1364, 1370, 1445
Bso31I	GGTCTC	1 cut(s)	1445
Bsp119I	TTCGAA	1 cut(s)	594
Bsp143I	GATC	5 cut(s)	366, 856, 1396, 1435, 1458
BspACI	CCGC	1 cut(s)	944
BspCNI	CTCAG	4 cut(s)	81, 906, 985, 1360
BspFNI	CGCG	1 cut(s)	121
BspLI	GGNNCC	1 cut(s)	746
BspMAI	CTGCAG	1 cut(s)	480
BspPI	GGATC	1 cut(s)	374
BspQI	GCTCTTC	3 cut(s)	779, 924, 1310
BspT104I	TTCGAA	1 cut(s)	594
BspTI	CTTAAG	1 cut(s)	1462
BspTNI	GGTCTC	1 cut(s)	1445
BsrI	ACTGG	2 cut(s)	790, 1321
BssMI	GATC	5 cut(s)	366, 856, 1396, 1435, 1458
BssNAI	GTATAC	1 cut(s)	1133
Bst1107I	GTATAC	1 cut(s)	1133
Bst4CI	ACNGT	1 cut(s)	1127
Bst6I	CTCTTC	9 cut(s)	273, 591, 750, 779, 924, 942, 1101, 1310, 1443
BstAFI	CTTAAG	1 cut(s)	1462
BstBI	TTCGAA	1 cut(s)	594
BstC8I	GCNNGC	2 cut(s)	65, 990
BstDEI	CTNAG	8 cut(s)	68, 362, 413, 740, 893, 914, 993, 1368
BstF5I	GGATG	2 cut(s)	105, 924
BstFNI	CGCG	1 cut(s)	121
BstHHI	GCGC	1 cut(s)	267
BstKTI	GATC	5 cut(s)	369, 859, 1399, 1438, 1461
BstMAI	GTCTC	4 cut(s)	232, 1364, 1370, 1445
BstMBI	GATC	5 cut(s)	366, 856, 1396, 1435, 1458
BstMWI	GCNNNNNNNGC	2 cut(s)	118, 1317
BstNSI	RCATGY	3 cut(s)	10, 67, 992
BstSFI	CTRYAG	1 cut(s)	476
BstUI	CGCG	1 cut(s)	121
BstV2I	GAAGAC	1 cut(s)	851
BstX2I	RGATCY	1 cut(s)	1458
BstYI	RGATCY	1 cut(s)	1458
BstZ17I	GTATAC	1 cut(s)	1133
Bsu36I	CCTNAGG	1 cut(s)	914
BtsCI	GGATG	2 cut(s)	105, 924
BtsIMutI	CAGTG	1 cut(s)	1123
Cac8I	GCNNGC	2 cut(s)	65, 990
CfoI	GCGC	1 cut(s)	267
Cfr13I	GGNCC	2 cut(s)	670, 1180
Csp6I	GTAC	1 cut(s)	212
CspCI	CAANNNNNGTGG	4 cut(s)	234, 269, 1108, 1143
CviAII	CATG	5 cut(s)	7, 29, 64, 860, 989
CviQI	GTAC	1 cut(s)	212
DdeI	CTNAG	8 cut(s)	68, 362, 413, 740, 893, 914, 993, 1368
DpnI	GATC	5 cut(s)	368, 858, 1398, 1437, 1460
DpnII	GATC	5 cut(s)	366, 856, 1396, 1435, 1458
Eam1104I	CTCTTC	9 cut(s)	273, 591, 750, 779, 924, 942, 1101, 1310, 1443
EarI	CTCTTC	9 cut(s)	273, 591, 750, 779, 924, 942, 1101, 1310, 1443
Eco31I	GGTCTC	1 cut(s)	1445
Eco32I	GATATC	1 cut(s)	223
Eco47I	GGWCC	2 cut(s)	670, 1180
Eco57I	CTGAAG	1 cut(s)	218
Eco81I	CCTNAGG	1 cut(s)	914
EcoRV	GATATC	1 cut(s)	223
EcoT22I	ATGCAT	1 cut(s)	185
FaeI	CATG	5 cut(s)	10, 32, 67, 863, 992
FalI	AAGNNNNNCTT	2 cut(s)	747, 779
FatI	CATG	5 cut(s)	6, 28, 63, 859, 988
FauNDI	CATATG	2 cut(s)	802, 1333
FbaI	TGATCA	2 cut(s)	856, 1435
FblI	GTMKAC	1 cut(s)	1132
FokI	GGATG	2 cut(s)	112, 931
FspBI	CTAG	6 cut(s)	573, 677, 824, 965, 1187, 1355
FspI	TGCGCA	1 cut(s)	266
GlaI	GCGC	1 cut(s)	266
HhaI	GCGC	1 cut(s)	267
Hin1II	CATG	5 cut(s)	10, 32, 67, 863, 992
Hin6I	GCGC	1 cut(s)	265
HinP1I	GCGC	1 cut(s)	265
HincII	GTYRAC	1 cut(s)	1120
HindII	GTYRAC	1 cut(s)	1120
HindIII	AAGCTT	2 cut(s)	1309, 1343
HinfI	GANTC	4 cut(s)	103, 591, 827, 1496
Hpy166II	GTNNAC	2 cut(s)	1120, 1133
Hpy188I	TCNGA	4 cut(s)	108, 227, 237, 832
Hpy188III	TCNNGA	3 cut(s)	218, 880, 1427
Hpy8I	GTNNAC	2 cut(s)	1120, 1133
Hpy99I	CGWCG	1 cut(s)	131
HpyAV	CCTTC	1 cut(s)	1041
HpyCH4III	ACNGT	1 cut(s)	1127
HpyCH4IV	ACGT	1 cut(s)	214
HpyF10VI	GCNNNNNNNGC	2 cut(s)	118, 1317
HpyF3I	CTNAG	8 cut(s)	68, 362, 413, 740, 893, 914, 993, 1368
HpySE526I	ACGT	1 cut(s)	214
Hsp92II	CATG	5 cut(s)	10, 32, 67, 863, 992
HspAI	GCGC	1 cut(s)	265
Ksp22I	TGATCA	2 cut(s)	856, 1435
Kzo9I	GATC	5 cut(s)	366, 856, 1396, 1435, 1458
LguI	GCTCTTC	3 cut(s)	779, 924, 1310
LpnPI	CCDG	9 cut(s)	55, 203, 446, 543, 653, 803, 865, 1163, 1334
LweI	GCATC	1 cut(s)	192
MaeI	CTAG	6 cut(s)	573, 677, 824, 965, 1187, 1355
MaeII	ACGT	1 cut(s)	214
MaeIII	GTNAC	8 cut(s)	416, 432, 579, 759, 968, 1269, 1440, 1489
MalI	GATC	5 cut(s)	368, 858, 1398, 1437, 1460
MboI	GATC	5 cut(s)	366, 856, 1396, 1435, 1458
MfeI	CAATTG	3 cut(s)	317, 644, 1154
MflI	RGATCY	1 cut(s)	1458
MluCI	AATT	9 cut(s)	140, 165, 317, 644, 680, 869, 1154, 1190, 1472
MlyI	GAGTC	1 cut(s)	1490
MnlI	CCTC	9 cut(s)	12, 541, 592, 617, 700, 760, 1102, 1210, 1291
Mph1103I	ATGCAT	1 cut(s)	185
MroXI	GAANNNNTTC	1 cut(s)	590
MseI	TTAA	7 cut(s)	57, 164, 426, 711, 1347, 1463, 1519
MspCI	CTTAAG	1 cut(s)	1462
MunI	CAATTG	3 cut(s)	317, 644, 1154
MvnI	CGCG	1 cut(s)	121
MwoI	GCNNNNNNNGC	2 cut(s)	118, 1317
NdeI	CATATG	2 cut(s)	802, 1333
NdeII	GATC	5 cut(s)	366, 856, 1396, 1435, 1458
NlaIII	CATG	5 cut(s)	10, 32, 67, 863, 992
NlaIV	GGNNCC	1 cut(s)	746
NmuCI	GTSAC	1 cut(s)	1489
NsbI	TGCGCA	1 cut(s)	266
NsiI	ATGCAT	1 cut(s)	185
NspI	RCATGY	3 cut(s)	10, 67, 992
NspV	TTCGAA	1 cut(s)	594
PaeI	GCATGC	2 cut(s)	67, 992
PciI	ACATGT	1 cut(s)	6
PciSI	GCTCTTC	3 cut(s)	779, 924, 1310
PdmI	GAANNNNTTC	1 cut(s)	590
PfeI	GAWTC	3 cut(s)	103, 591, 827
PleI	GAGTC	1 cut(s)	1490
PpsI	GAGTC	1 cut(s)	1490
PscI	ACATGT	1 cut(s)	6
PspN4I	GGNNCC	1 cut(s)	746
PspPI	GGNCC	2 cut(s)	670, 1180
PstI	CTGCAG	1 cut(s)	480
PsuI	RGATCY	1 cut(s)	1458
RsaI	GTAC	1 cut(s)	213
RsaNI	GTAC	1 cut(s)	212
SapI	GCTCTTC	3 cut(s)	779, 924, 1310
SaqAI	TTAA	7 cut(s)	57, 164, 426, 711, 1347, 1463, 1519
Sau3AI	GATC	5 cut(s)	366, 856, 1396, 1435, 1458
Sau96I	GGNCC	2 cut(s)	670, 1180
SchI	GAGTC	1 cut(s)	1490
SfaNI	GCATC	1 cut(s)	192
SfcI	CTRYAG	1 cut(s)	476
SfuI	TTCGAA	1 cut(s)	594
SinI	GGWCC	2 cut(s)	670, 1180
SmlI	CTYRAG	4 cut(s)	764, 1199, 1427, 1462
SmoI	CTYRAG	4 cut(s)	764, 1199, 1427, 1462
SphI	GCATGC	2 cut(s)	67, 992
Sse9I	AATT	9 cut(s)	140, 165, 317, 644, 680, 869, 1154, 1190, 1472
SsiI	CCGC	1 cut(s)	944
SspI	AATATT	2 cut(s)	955, 1390
SspMI	CTAG	6 cut(s)	573, 677, 824, 965, 1187, 1355
TaaI	ACNGT	1 cut(s)	1127
TaiI	ACGT	1 cut(s)	217
TaqI	TCGA	2 cut(s)	594, 837
TasI	AATT	9 cut(s)	140, 165, 317, 644, 680, 869, 1154, 1190, 1472
TfiI	GAWTC	3 cut(s)	103, 591, 827
Tru1I	TTAA	7 cut(s)	57, 164, 426, 711, 1347, 1463, 1519
Tru9I	TTAA	7 cut(s)	57, 164, 426, 711, 1347, 1463, 1519
TscAI	CASTG	1 cut(s)	1130
TseFI	GTSAC	1 cut(s)	1489
Tsp45I	GTSAC	1 cut(s)	1489
TspGWI	ACGGA	2 cut(s)	24, 1105
TspRI	CASTG	1 cut(s)	1130
Vha464I	CTTAAG	1 cut(s)	1462
VpaK11BI	GGWCC	2 cut(s)	670, 1180
XapI	RAATTY	2 cut(s)	680, 1190
XceI	RCATGY	3 cut(s)	10, 67, 992
XmiI	GTMKAC	1 cut(s)	1132
XmnI	GAANNNNTTC	1 cut(s)	590
XspI	CTAG	6 cut(s)	573, 677, 824, 965, 1187, 1355
Zsp2I	ATGCAT	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.