Rmu_sc0009084.1_g000005

B-cell receptor-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009084.1
OG0012667
Physical Location & Seq
Reverse (-)
18944 .. 20763
1820 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009084.1_g000005.1.cds

Sequence Viewer

Length: 1170 bp
atgcttggattttcggcttcgatagctttgaagaaggcagtgatgaagtgcctggatgcgttcaagggaagagattggctcaatgcagagattatcgttttgggattgctcttccttgtgaactttgttaggatgatccagacgcctagcaactgtcttgatttacttttcagtggtgtactcatactccttgtaagagtcattcatgctgcagaagccaagtccctttctgcaaataatggtcttcttgacgaaaatcaaatcttaaagaaccggttggagtcattggacacaggactcgacaagctagaatctgatctcgagacaaagacagaagacgtaatttctgcagaagtcaactctattgttctaatcaaacactctgaagagttccatcttgagtatgatctcttggtcaagcaaaaccaaattttaaagaaccgattgcagtcgttgagcacaagagttgaacaggtagaatgtgaacttgagatcaagaagaaaaaggttaatgatgtagaagccaagaatgtttctctaagaaaacaacttgctgagttcctcctagagcaccattgtatgcttgaaaccaagaaaaaagaggttactgctgcagaagcccagaatagaaatataaagaagcaatttgatgagctcttccttgagcaccttagcttacttgagaagaacgatactttaaacaaccagttgcagtcatcagggaccaaaatcgtacggctagaatatgaagttttggccaagacaagagacttgaaagctgctgaagccaatgatattactttaaggaaggataagaaaactttggaggagcggttgcaggcatggggcacaaaactgagacacatagaaatcatagaatctgaacttaacacaaggaaaagaagtatcagtgcatatgaagccaaaattactgatctaaaaaaccaagttgaagagctctctcttcaacacgattgtttgcttgggaacaaccaaactttaaggaaccagctgcggttgtcgcacacaagacttagacaaacagaatcaaaacttgggaccaaaacacaagaagtttgtgttgtaaaaaccaatattgttgctctaaataaggaaaatgatgatttgaagaaccagttgcgatcattggagacaacttcaaagagatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000139 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0005795 GO:0005811 GO:0005886 GO:0005887 GO:0006810 GO:0006873 GO:0006874 GO:0006875 GO:0006888 GO:0007154 GO:0007165 GO:0007204 GO:0007276 GO:0007283 GO:0008104 GO:0008150 GO:0009893 GO:0009894 GO:0009896 GO:0009966 GO:0009967 GO:0009987 GO:0010604 GO:0010646 GO:0010647 GO:0010941 GO:0010942 GO:0010950 GO:0010952 GO:0012505 GO:0016020 GO:0016021 GO:0016192 GO:0019222 GO:0019722 GO:0019725 GO:0019932 GO:0019953 GO:0022414 GO:0023051 GO:0023052 GO:0023056 GO:0030003 GO:0030135 GO:0030136 GO:0030162 GO:0031090 GO:0031224 GO:0031226 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031410 GO:0031982 GO:0031984 GO:0031985 GO:0032268 GO:0032270 GO:0032386 GO:0032388 GO:0032434 GO:0032436 GO:0032469 GO:0032471 GO:0032501 GO:0032504 GO:0032580 GO:0032879 GO:0032880 GO:0033036 GO:0033157 GO:0033365 GO:0034613 GO:0035556 GO:0035584 GO:0042175 GO:0042176 GO:0042287 GO:0042288 GO:0042592 GO:0042981 GO:0043065 GO:0043067 GO:0043068 GO:0043085 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043280 GO:0043281 GO:0044093 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0044703 GO:0044877 GO:0045732 GO:0045862 GO:0046907 GO:0048193 GO:0048232 GO:0048471 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048609 GO:0048878 GO:0050789 GO:0050790 GO:0050794 GO:0050801 GO:0050896 GO:0051049 GO:0051050 GO:0051171 GO:0051173 GO:0051179 GO:0051222 GO:0051223 GO:0051234 GO:0051246 GO:0051247 GO:0051336 GO:0051345 GO:0051480 GO:0051560 GO:0051561 GO:0051641 GO:0051649 GO:0051704 GO:0051716 GO:0052547 GO:0052548 GO:0055065 GO:0055074 GO:0055080 GO:0055082 GO:0060255 GO:0060341 GO:0061136 GO:0065007 GO:0065008 GO:0065009 GO:0070201 GO:0070727 GO:0070861 GO:0070863 GO:0070972 GO:0070973 GO:0071944 GO:0072503 GO:0072507 GO:0080090 GO:0080134 GO:0080135 GO:0090087 GO:0090316 GO:0097038 GO:0097708 GO:0098588 GO:0098771 GO:0098791 GO:0098827 GO:1901800 GO:1902531 GO:1902533 GO:1903050 GO:1903052 GO:1903069 GO:1903071 GO:1903362 GO:1903364 GO:1903827 GO:1903829 GO:1904152 GO:1904154 GO:1904292 GO:1904294 GO:1904951 GO:1905897 GO:1905898 GO:2000058 GO:2000060 GO:2000116 GO:2001056 GO:2001233 GO:2001235 GO:2001242 GO:2001244
KEGG Pathways
Metabolic & Signaling
ko04141 ko05165 map04141 map05165
Pfam Domains
Protein Families
Bap31

Protein Analysis

389

Amino Acids

44.51

Weight (kDa)

8.08

Isoelectric Point (pI)

37.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 832
AciI CCGC 2 cut(s) 832, 1015
AclWI GGATC 1 cut(s) 130
AcoI YGGCCR 1 cut(s) 756
AcsI RAATTY 1 cut(s) 429
AcuI CTGAAG 2 cut(s) 405, 804
AcyI GRCGYC 1 cut(s) 143
AfaI GTAC 2 cut(s) 180, 735
AgeI ACCGGT 1 cut(s) 273
AgsI TTSAA 9 cut(s) 31, 64, 470, 587, 775, 953, 968, 1129, 1161
AjnI CCWGG 1 cut(s) 51
AjuI GAANNNNNNNTTGG 2 cut(s) 1038, 1070
AluBI AGCT 7 cut(s) 26, 307, 655, 675, 779, 958, 1012
AluI AGCT 7 cut(s) 26, 307, 655, 675, 779, 958, 1012
Alw21I GWGCWC 5 cut(s) 461, 573, 657, 669, 960
Alw26I GTCTC 4 cut(s) 317, 762, 853, 1145
AlwI GGATC 1 cut(s) 130
Ama87I CYCGRG 1 cut(s) 320
AoxI GGCC 1 cut(s) 756
ApeKI GCWGC 4 cut(s) 209, 611, 779, 1012
ApoI RAATTY 1 cut(s) 429
AsiGI ACCGGT 1 cut(s) 273
AspS9I GGNCC 2 cut(s) 723, 1059
AvaI CYCGRG 1 cut(s) 320
AvaII GGWCC 2 cut(s) 723, 1059
BaeGI GKGCMC 1 cut(s) 851
BalI TGGCCA 1 cut(s) 758
BanII GRGCYC 2 cut(s) 657, 960
BbsI GAAGAC 2 cut(s) 236, 342
Bbv12I GWGCWC 5 cut(s) 461, 573, 657, 669, 960
BbvI GCAGC 4 cut(s) 196, 598, 766, 999
BccI CCATC 1 cut(s) 402
BceAI ACGGC 1 cut(s) 752
BciT130I CCWGG 1 cut(s) 53
BcoDI GTCTC 4 cut(s) 317, 762, 853, 1145
BfaI CTAG 4 cut(s) 147, 308, 566, 740
BfmI CTRYAG 3 cut(s) 210, 348, 612
BisI GCNGC 4 cut(s) 210, 612, 780, 1013
BlsI GCNGC 4 cut(s) 211, 613, 781, 1014
Bme1390I CCNGG 1 cut(s) 53
Bme18I GGWCC 2 cut(s) 723, 1059
BmeT110I CYCGRG 1 cut(s) 320
BmgT120I GGNCC 2 cut(s) 723, 1059
BmiI GGNNCC 3 cut(s) 724, 1007, 1060
BmrFI CCNGG 1 cut(s) 53
BmsI GCATC 1 cut(s) 46
BpiI GAAGAC 2 cut(s) 236, 342
BplI GAGNNNNNCTC 2 cut(s) 63, 95
Bpu10I CCTNAGC 1 cut(s) 671
BpuEI CTTGAG 4 cut(s) 419, 509, 683, 701
BsaHI GRCGYC 1 cut(s) 143
BsaWI WCCGGW 1 cut(s) 273
BsaXI ACNNNNNCTCC 4 cut(s) 171, 201, 818, 848
Bse118I RCCGGY 1 cut(s) 273
Bse1I ACTGG 2 cut(s) 706, 1135
BseBI CCWGG 1 cut(s) 53
BseGI GGATG 2 cut(s) 61, 138
BseMII CTCAG 2 cut(s) 546, 848
BseNI ACTGG 2 cut(s) 706, 1135
BseRI GAGGAG 1 cut(s) 842
BseSI GKGCMC 1 cut(s) 851
BseXI GCAGC 4 cut(s) 196, 598, 766, 999
BshFI GGCC 1 cut(s) 758
BshTI ACCGGT 1 cut(s) 273
BsiHKAI GWGCWC 5 cut(s) 461, 573, 657, 669, 960
BsiHKCI CYCGRG 1 cut(s) 320
BsiSI CCGG 1 cut(s) 274
BsiWI CGTACG 1 cut(s) 733
BslFI GGGAC 3 cut(s) 208, 736, 1072
BsmAI GTCTC 4 cut(s) 317, 762, 853, 1145
BsmFI GGGAC 3 cut(s) 208, 736, 1072
BsnI GGCC 1 cut(s) 758
BsoBI CYCGRG 1 cut(s) 320
Bsp1286I GDGCHC 6 cut(s) 461, 573, 657, 669, 851, 960
Bsp143I GATC 6 cut(s) 135, 316, 406, 492, 934, 1142
BspACI CCGC 2 cut(s) 832, 1015
BspANI GGCC 1 cut(s) 758
BspCNI CTCAG 2 cut(s) 547, 849
BspLI GGNNCC 3 cut(s) 724, 1007, 1060
BspMAI CTGCAG 3 cut(s) 214, 352, 616
BspPI GGATC 1 cut(s) 130
BspQI GCTCTTC 3 cut(s) 116, 662, 948
BsrBI CCGCTC 1 cut(s) 832
BsrFI RCCGGY 1 cut(s) 273
BsrI ACTGG 2 cut(s) 706, 1135
BssAI RCCGGY 1 cut(s) 273
BssMI GATC 6 cut(s) 135, 316, 406, 492, 934, 1142
BssNI GRCGYC 1 cut(s) 143
Bst2UI CCWGG 1 cut(s) 53
Bst4CI ACNGT 1 cut(s) 155
Bst6I CTCTTC 6 cut(s) 64, 116, 381, 662, 948, 969
BstACI GRCGYC 1 cut(s) 143
BstC8I GCNNGC 1 cut(s) 840
BstDEI CTNAG 5 cut(s) 539, 555, 671, 857, 1034
BstF5I GGATG 2 cut(s) 61, 138
BstKTI GATC 6 cut(s) 138, 319, 409, 495, 937, 1145
BstMAI GTCTC 4 cut(s) 317, 762, 853, 1145
BstMBI GATC 6 cut(s) 135, 316, 406, 492, 934, 1142
BstMWI GCNNNNNNNGC 6 cut(s) 23, 215, 617, 785, 920, 1021
BstNI CCWGG 1 cut(s) 53
BstSCI CCNGG 1 cut(s) 51
BstSFI CTRYAG 3 cut(s) 210, 348, 612
BstSLI GKGCMC 1 cut(s) 851
BstV1I GCAGC 4 cut(s) 196, 598, 766, 999
BstV2I GAAGAC 2 cut(s) 236, 342
BsuRI GGCC 1 cut(s) 758
BtsCI GGATG 2 cut(s) 61, 138
BtsI GCAGTG 1 cut(s) 45
BtsIMutI CAGTG 3 cut(s) 45, 178, 916
Cac8I GCNNGC 1 cut(s) 840
Cfr10I RCCGGY 1 cut(s) 273
Cfr13I GGNCC 2 cut(s) 723, 1059
CseI GACGC 1 cut(s) 151
Csp6I GTAC 2 cut(s) 179, 734
CspAI ACCGGT 1 cut(s) 273
CviAII CATG 2 cut(s) 206, 843
CviQI GTAC 2 cut(s) 179, 734
DdeI CTNAG 5 cut(s) 539, 555, 671, 857, 1034
DpnI GATC 6 cut(s) 137, 318, 408, 494, 936, 1144
DpnII GATC 6 cut(s) 135, 316, 406, 492, 934, 1142
DraI TTTAAA 2 cut(s) 435, 699
EaeI YGGCCR 1 cut(s) 756
Eam1104I CTCTTC 6 cut(s) 64, 116, 381, 662, 948, 969
EarI CTCTTC 6 cut(s) 64, 116, 381, 662, 948, 969
Ecl136II GAGCTC 2 cut(s) 655, 958
Eco24I GRGCYC 2 cut(s) 657, 960
Eco47I GGWCC 2 cut(s) 723, 1059
Eco53kI GAGCTC 2 cut(s) 655, 958
Eco57I CTGAAG 2 cut(s) 405, 804
Eco88I CYCGRG 1 cut(s) 320
EcoICRI GAGCTC 2 cut(s) 655, 958
EcoRII CCWGG 1 cut(s) 51
EcoT38I GRGCYC 2 cut(s) 657, 960
FaeI CATG 2 cut(s) 209, 846
FaqI GGGAC 3 cut(s) 208, 736, 1072
FatI CATG 2 cut(s) 205, 842
FauNDI CATATG 1 cut(s) 916
Fnu4HI GCNGC 4 cut(s) 210, 612, 780, 1013
FokI GGATG 2 cut(s) 68, 145
FriOI GRGCYC 2 cut(s) 657, 960
Fsp4HI GCNGC 4 cut(s) 210, 612, 780, 1013
FspBI CTAG 4 cut(s) 147, 308, 566, 740
GluI GCNGC 4 cut(s) 210, 612, 780, 1013
HaeIII GGCC 1 cut(s) 758
HapII CCGG 1 cut(s) 274
HgaI GACGC 1 cut(s) 151
Hin1I GRCGYC 1 cut(s) 143
Hin1II CATG 2 cut(s) 209, 846
HincII GTYRAC 1 cut(s) 358
HindII GTYRAC 1 cut(s) 358
HinfI GANTC 6 cut(s) 198, 281, 297, 311, 878, 1046
HpaII CCGG 1 cut(s) 274
Hpy166II GTNNAC 4 cut(s) 121, 179, 358, 485
Hpy188I TCNGA 3 cut(s) 316, 385, 883
Hpy188III TCNNGA 7 cut(s) 139, 158, 248, 320, 322, 398, 496
Hpy8I GTNNAC 4 cut(s) 121, 179, 358, 485
HpyAV CCTTC 2 cut(s) 28, 802
HpyCH4III ACNGT 1 cut(s) 155
HpyCH4IV ACGT 1 cut(s) 339
HpyCH4V TGCA 9 cut(s) 86, 212, 233, 350, 448, 614, 712, 838, 914
HpyF10VI GCNNNNNNNGC 6 cut(s) 23, 215, 617, 785, 920, 1021
HpyF3I CTNAG 5 cut(s) 539, 555, 671, 857, 1034
HpySE526I ACGT 1 cut(s) 339
Hsp92I GRCGYC 1 cut(s) 143
Hsp92II CATG 2 cut(s) 209, 846
Kzo9I GATC 6 cut(s) 135, 316, 406, 492, 934, 1142
LguI GCTCTTC 3 cut(s) 116, 662, 948
LmnI GCTCC 1 cut(s) 829
Lsp1109I GCAGC 4 cut(s) 196, 598, 766, 999
LweI GCATC 1 cut(s) 46
MaeI CTAG 4 cut(s) 147, 308, 566, 740
MaeII ACGT 1 cut(s) 339
MaeIII GTNAC 1 cut(s) 604
MalI GATC 6 cut(s) 137, 318, 408, 494, 936, 1144
MbiI CCGCTC 1 cut(s) 832
MboI GATC 6 cut(s) 135, 316, 406, 492, 934, 1142
MhlI GDGCHC 6 cut(s) 461, 573, 657, 669, 851, 960
MlsI TGGCCA 1 cut(s) 758
MluCI AATT 4 cut(s) 342, 429, 644, 927
MluNI TGGCCA 1 cut(s) 758
MlyI GAGTC 3 cut(s) 207, 290, 291
MmeI TCCRAC 1 cut(s) 258
MnlI CCTC 3 cut(s) 572, 595, 820
Mox20I TGGCCA 1 cut(s) 758
MscI TGGCCA 1 cut(s) 758
MseI TTAA 7 cut(s) 266, 434, 510, 698, 803, 888, 1001
Msp20I TGGCCA 1 cut(s) 758
MspA1I CMGCKG 1 cut(s) 1012
MspI CCGG 1 cut(s) 274
MspR9I CCNGG 1 cut(s) 53
MvaI CCWGG 1 cut(s) 53
MwoI GCNNNNNNNGC 6 cut(s) 23, 215, 617, 785, 920, 1021
NdeI CATATG 1 cut(s) 916
NdeII GATC 6 cut(s) 135, 316, 406, 492, 934, 1142
NlaIII CATG 2 cut(s) 209, 846
NlaIV GGNNCC 3 cut(s) 724, 1007, 1060
PaeR7I CTCGAG 1 cut(s) 320
PciSI GCTCTTC 3 cut(s) 116, 662, 948
PfeI GAWTC 3 cut(s) 311, 878, 1046
Pfl23II CGTACG 1 cut(s) 733
PinAI ACCGGT 1 cut(s) 273
PkrI GCNGC 4 cut(s) 211, 613, 781, 1014
PleI GAGTC 3 cut(s) 206, 289, 291
PpsI GAGTC 3 cut(s) 206, 289, 291
Psp124BI GAGCTC 2 cut(s) 657, 960
Psp6I CCWGG 1 cut(s) 51
PspGI CCWGG 1 cut(s) 51
PspLI CGTACG 1 cut(s) 733
PspN4I GGNNCC 3 cut(s) 724, 1007, 1060
PspPI GGNCC 2 cut(s) 723, 1059
PstI CTGCAG 3 cut(s) 214, 352, 616
PvuII CAGCTG 1 cut(s) 1012
RsaI GTAC 2 cut(s) 180, 735
RsaNI GTAC 2 cut(s) 179, 734
SacI GAGCTC 2 cut(s) 657, 960
SapI GCTCTTC 3 cut(s) 116, 662, 948
SaqAI TTAA 7 cut(s) 266, 434, 510, 698, 803, 888, 1001
SatI GCNGC 4 cut(s) 210, 612, 780, 1013
Sau3AI GATC 6 cut(s) 135, 316, 406, 492, 934, 1142
Sau96I GGNCC 2 cut(s) 723, 1059
SchI GAGTC 3 cut(s) 207, 290, 291
ScrFI CCNGG 1 cut(s) 53
SduI GDGCHC 6 cut(s) 461, 573, 657, 669, 851, 960
SfaNI GCATC 1 cut(s) 46
SfcI CTRYAG 3 cut(s) 210, 348, 612
Sfr274I CTCGAG 1 cut(s) 320
SinI GGWCC 2 cut(s) 723, 1059
SlaI CTCGAG 1 cut(s) 320
SmlI CTYRAG 5 cut(s) 320, 398, 488, 662, 680
SmoI CTYRAG 5 cut(s) 320, 398, 488, 662, 680
Sse9I AATT 4 cut(s) 342, 429, 644, 927
SsiI CCGC 2 cut(s) 832, 1015
SspI AATATT 1 cut(s) 1096
SspMI CTAG 4 cut(s) 147, 308, 566, 740
SstI GAGCTC 2 cut(s) 657, 960
StyD4I CCNGG 1 cut(s) 51
TaaI ACNGT 1 cut(s) 155
TaiI ACGT 1 cut(s) 342
TaqI TCGA 3 cut(s) 20, 300, 321
TasI AATT 4 cut(s) 342, 429, 644, 927
TatI WGTACW 1 cut(s) 178
TfiI GAWTC 3 cut(s) 311, 878, 1046
Tru1I TTAA 7 cut(s) 266, 434, 510, 698, 803, 888, 1001
Tru9I TTAA 7 cut(s) 266, 434, 510, 698, 803, 888, 1001
TscAI CASTG 3 cut(s) 45, 178, 916
TseI GCWGC 4 cut(s) 209, 611, 779, 1012
TspDTI ATGAA 4 cut(s) 59, 194, 762, 933
TspRI CASTG 3 cut(s) 45, 178, 916
VpaK11BI GGWCC 2 cut(s) 723, 1059
XapI RAATTY 1 cut(s) 429
XhoI CTCGAG 1 cut(s) 320
XspI CTAG 4 cut(s) 147, 308, 566, 740
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.