Rroxscaffold_1G00073290

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0012667
Physical Location & Seq
Forward (+)
94197213 .. 94198245
1033 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00073290.1

Sequence Viewer

Length: 609 bp
ATGCTTGCATTTTCGGCTTCGATTGCTTTGAAGAAGGCAGTGATGAAGTGCCTGGATGCGTTCAAGGGAAGAGATTGGCTCAATGCAGAGAATATCGTTTTGGGATTGCTCTTCCTTGTGAACTTTGTTAGGATGATCCAGACGCCTAGCAACTGTCTTGATTTACTTTTCACTGGTGTACTCATACTCCCTGTAAGAGTCATTCATGCTGCAGAAGCCAAGTCCCTTTCTGAAAATAATGGTCTTCTTGACGAAAATCAAATCTTAAAGAACCGGTTGCAGTCATTGGACACAGAACTCGACAAGCTAGAATCTGATCTCGAGACAAAGACAGAAGACTTAATTTCTGCAGAAGTCAACGCTATTGTTCTAATCAAACACTCTGAAGAGTTGCATCTTGAGTATGATCTCTTGGTCAAGCAAAACCAAATTTTAAAGAACCGCACAAGAGTCGAACAGGTAGAATGTGCACTTGAGATCAAGAAGAAAAAGGTTAATGATGTAGAAGCCAAGAATGTTTCTCTAAGAAAGCAACTTGATGAGTTCCTCCTAGAGCACCATTGTATGCTTGAGACCAAGAAAAAAGAGGTTACTGCTGCAGAAGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

202

Amino Acids

22.92

Weight (kDa)

5.63

Isoelectric Point (pI)

32.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 442
AclWI GGATC 1 cut(s) 130
AcsI RAATTY 1 cut(s) 429
AcuI CTGAAG 1 cut(s) 405
AcyI GRCGYC 1 cut(s) 143
AfaI GTAC 1 cut(s) 180
AgeI ACCGGT 1 cut(s) 273
AgsI TTSAA 2 cut(s) 31, 64
AjnI CCWGG 1 cut(s) 51
AjuI GAANNNNNNNTTGG 2 cut(s) 83, 115
AluBI AGCT 1 cut(s) 307
AluI AGCT 1 cut(s) 307
Alw21I GWGCWC 2 cut(s) 472, 558
Alw26I GTCTC 2 cut(s) 317, 566
Alw44I GTGCAC 1 cut(s) 468
AlwI GGATC 1 cut(s) 130
Ama87I CYCGRG 1 cut(s) 320
ApaLI GTGCAC 1 cut(s) 468
ApeKI GCWGC 2 cut(s) 209, 596
ApoI RAATTY 1 cut(s) 429
AsiGI ACCGGT 1 cut(s) 273
AvaI CYCGRG 1 cut(s) 320
BaeGI GKGCMC 1 cut(s) 472
BbsI GAAGAC 2 cut(s) 236, 342
Bbv12I GWGCWC 2 cut(s) 472, 558
BbvI GCAGC 2 cut(s) 196, 583
BcgI CGANNNNNNTGC 2 cut(s) 433, 467
BciT130I CCWGG 1 cut(s) 53
BcoDI GTCTC 2 cut(s) 317, 566
BfaI CTAG 3 cut(s) 147, 308, 551
BfmI CTRYAG 3 cut(s) 210, 348, 597
BisI GCNGC 2 cut(s) 210, 597
BlsI GCNGC 2 cut(s) 211, 598
Bme1390I CCNGG 1 cut(s) 53
BmeT110I CYCGRG 1 cut(s) 320
BmrFI CCNGG 1 cut(s) 53
BmsI GCATC 2 cut(s) 46, 403
BpiI GAAGAC 2 cut(s) 236, 342
BplI GAGNNNNNCTC 2 cut(s) 63, 95
BpuEI CTTGAG 3 cut(s) 419, 494, 590
BsaHI GRCGYC 1 cut(s) 143
BsaI GGTCTC 1 cut(s) 566
BsaWI WCCGGW 1 cut(s) 273
BsaXI ACNNNNNCTCC 2 cut(s) 171, 201
Bse118I RCCGGY 1 cut(s) 273
Bse1I ACTGG 1 cut(s) 178
BseBI CCWGG 1 cut(s) 53
BseGI GGATG 2 cut(s) 61, 138
BseNI ACTGG 1 cut(s) 178
BseSI GKGCMC 1 cut(s) 472
BseXI GCAGC 2 cut(s) 196, 583
BshTI ACCGGT 1 cut(s) 273
BsiHKAI GWGCWC 2 cut(s) 472, 558
BsiHKCI CYCGRG 1 cut(s) 320
BsiSI CCGG 1 cut(s) 274
BslFI GGGAC 1 cut(s) 208
BsmAI GTCTC 2 cut(s) 317, 566
BsmFI GGGAC 1 cut(s) 208
Bso31I GGTCTC 1 cut(s) 566
BsoBI CYCGRG 1 cut(s) 320
Bsp1286I GDGCHC 2 cut(s) 472, 558
Bsp143I GATC 4 cut(s) 135, 316, 406, 477
BspACI CCGC 1 cut(s) 442
BspMAI CTGCAG 3 cut(s) 214, 352, 601
BspPI GGATC 1 cut(s) 130
BspQI GCTCTTC 1 cut(s) 116
BspTNI GGTCTC 1 cut(s) 566
BsrFI RCCGGY 1 cut(s) 273
BsrI ACTGG 1 cut(s) 178
BssAI RCCGGY 1 cut(s) 273
BssMI GATC 4 cut(s) 135, 316, 406, 477
BssNI GRCGYC 1 cut(s) 143
Bst2UI CCWGG 1 cut(s) 53
Bst4CI ACNGT 1 cut(s) 155
Bst6I CTCTTC 3 cut(s) 64, 116, 381
BstACI GRCGYC 1 cut(s) 143
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 1 cut(s) 524
BstF5I GGATG 2 cut(s) 61, 138
BstKTI GATC 4 cut(s) 138, 319, 409, 480
BstMAI GTCTC 2 cut(s) 317, 566
BstMBI GATC 4 cut(s) 135, 316, 406, 477
BstMWI GCNNNNNNNGC 4 cut(s) 14, 23, 215, 602
BstNI CCWGG 1 cut(s) 53
BstSCI CCNGG 1 cut(s) 51
BstSFI CTRYAG 3 cut(s) 210, 348, 597
BstSLI GKGCMC 1 cut(s) 472
BstV1I GCAGC 2 cut(s) 196, 583
BstV2I GAAGAC 2 cut(s) 236, 342
BtsCI GGATG 2 cut(s) 61, 138
BtsI GCAGTG 1 cut(s) 45
BtsIMutI CAGTG 2 cut(s) 45, 171
Cac8I GCNNGC 1 cut(s) 6
Cfr10I RCCGGY 1 cut(s) 273
CseI GACGC 1 cut(s) 151
Csp6I GTAC 1 cut(s) 179
CspAI ACCGGT 1 cut(s) 273
CviAII CATG 1 cut(s) 206
CviJI RGCY 5 cut(s) 17, 79, 218, 307, 509
CviKI_1 RGCY 5 cut(s) 17, 79, 218, 307, 509
CviQI GTAC 1 cut(s) 179
DdeI CTNAG 1 cut(s) 524
DpnI GATC 4 cut(s) 137, 318, 408, 479
DpnII GATC 4 cut(s) 135, 316, 406, 477
DraI TTTAAA 1 cut(s) 435
Eam1104I CTCTTC 3 cut(s) 64, 116, 381
EarI CTCTTC 3 cut(s) 64, 116, 381
Eco31I GGTCTC 1 cut(s) 566
Eco57I CTGAAG 1 cut(s) 405
Eco88I CYCGRG 1 cut(s) 320
EcoRII CCWGG 1 cut(s) 51
FaeI CATG 1 cut(s) 209
FaiI YATR 5 cut(s) 185, 207, 405, 566, 607
FaqI GGGAC 1 cut(s) 208
FatI CATG 1 cut(s) 205
Fnu4HI GCNGC 2 cut(s) 210, 597
FokI GGATG 2 cut(s) 68, 145
Fsp4HI GCNGC 2 cut(s) 210, 597
FspBI CTAG 3 cut(s) 147, 308, 551
GluI GCNGC 2 cut(s) 210, 597
HapII CCGG 1 cut(s) 274
HgaI GACGC 1 cut(s) 151
Hin1I GRCGYC 1 cut(s) 143
Hin1II CATG 1 cut(s) 209
HincII GTYRAC 1 cut(s) 358
HindII GTYRAC 1 cut(s) 358
HinfI GANTC 3 cut(s) 198, 311, 450
HpaII CCGG 1 cut(s) 274
Hpy166II GTNNAC 4 cut(s) 121, 179, 358, 470
Hpy188I TCNGA 3 cut(s) 232, 316, 385
Hpy188III TCNNGA 7 cut(s) 139, 158, 248, 320, 322, 398, 481
Hpy8I GTNNAC 4 cut(s) 121, 179, 358, 470
HpyAV CCTTC 1 cut(s) 28
HpyCH4III ACNGT 1 cut(s) 155
HpyCH4V TGCA 8 cut(s) 8, 86, 212, 280, 350, 394, 470, 599
HpyF10VI GCNNNNNNNGC 4 cut(s) 14, 23, 215, 602
HpyF3I CTNAG 1 cut(s) 524
Hsp92I GRCGYC 1 cut(s) 143
Hsp92II CATG 1 cut(s) 209
Kzo9I GATC 4 cut(s) 135, 316, 406, 477
LguI GCTCTTC 1 cut(s) 116
LpnPI CCDG 7 cut(s) 38, 65, 152, 159, 204, 287, 443
Lsp1109I GCAGC 2 cut(s) 196, 583
LweI GCATC 2 cut(s) 46, 403
MaeI CTAG 3 cut(s) 147, 308, 551
MaeIII GTNAC 1 cut(s) 589
MalI GATC 4 cut(s) 137, 318, 408, 479
MboI GATC 4 cut(s) 135, 316, 406, 477
MboII GAAGA 7 cut(s) 43, 81, 103, 236, 347, 398, 496
MhlI GDGCHC 2 cut(s) 472, 558
MluCI AATT 2 cut(s) 342, 429
MlyI GAGTC 2 cut(s) 207, 459
MnlI CCTC 2 cut(s) 557, 580
MseI TTAA 4 cut(s) 266, 341, 434, 495
MspI CCGG 1 cut(s) 274
MspR9I CCNGG 1 cut(s) 53
MvaI CCWGG 1 cut(s) 53
MwoI GCNNNNNNNGC 4 cut(s) 14, 23, 215, 602
NdeII GATC 4 cut(s) 135, 316, 406, 477
NlaIII CATG 1 cut(s) 209
PaeR7I CTCGAG 1 cut(s) 320
PciSI GCTCTTC 1 cut(s) 116
PfeI GAWTC 1 cut(s) 311
PinAI ACCGGT 1 cut(s) 273
PkrI GCNGC 2 cut(s) 211, 598
PleI GAGTC 2 cut(s) 206, 458
PpsI GAGTC 2 cut(s) 206, 458
Psp6I CCWGG 1 cut(s) 51
PspGI CCWGG 1 cut(s) 51
PstI CTGCAG 3 cut(s) 214, 352, 601
RsaI GTAC 1 cut(s) 180
RsaNI GTAC 1 cut(s) 179
SapI GCTCTTC 1 cut(s) 116
SaqAI TTAA 4 cut(s) 266, 341, 434, 495
SatI GCNGC 2 cut(s) 210, 597
Sau3AI GATC 4 cut(s) 135, 316, 406, 477
SchI GAGTC 2 cut(s) 207, 459
ScrFI CCNGG 1 cut(s) 53
SduI GDGCHC 2 cut(s) 472, 558
SetI ASST 4 cut(s) 309, 462, 495, 591
SfaNI GCATC 2 cut(s) 46, 403
SfcI CTRYAG 3 cut(s) 210, 348, 597
Sfr274I CTCGAG 1 cut(s) 320
SlaI CTCGAG 1 cut(s) 320
SmlI CTYRAG 4 cut(s) 320, 398, 473, 569
SmoI CTYRAG 4 cut(s) 320, 398, 473, 569
Sse9I AATT 2 cut(s) 342, 429
SsiI CCGC 1 cut(s) 442
SspMI CTAG 3 cut(s) 147, 308, 551
StyD4I CCNGG 1 cut(s) 51
TaaI ACNGT 1 cut(s) 155
TaqI TCGA 4 cut(s) 20, 300, 321, 453
TasI AATT 2 cut(s) 342, 429
TatI WGTACW 1 cut(s) 178
TfiI GAWTC 1 cut(s) 311
Tru1I TTAA 4 cut(s) 266, 341, 434, 495
Tru9I TTAA 4 cut(s) 266, 341, 434, 495
TscAI CASTG 2 cut(s) 45, 178
TseI GCWGC 2 cut(s) 209, 596
TspDTI ATGAA 2 cut(s) 59, 194
TspRI CASTG 2 cut(s) 45, 178
VneI GTGCAC 1 cut(s) 468
XapI RAATTY 1 cut(s) 429
XhoI CTCGAG 1 cut(s) 320
XspI CTAG 3 cut(s) 147, 308, 551
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.