Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0012667

Physical Location & Seq

Genomic Coordinates Reverse (-)

1690505 .. 1691731

Gene Structure 1227 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG023400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGAAGTGCCTGGATGCGTTCAAGGGAAGAGATTGGCTCAATGCAGAGAATATCGTTTTGGGATTGCTCTTCCTTGTGAACTTTTCATTGAGCACAAGAGTCGAACAGGTAGAATGTGAACTTGAGATCAAGAAGAAAAAGGTTAATGATGTAGAAGCCAGGAATGTTTCTCTAAGAAAGCAACTTGATGAGTTCCTCCAAGAGCACCATTGTATGCTTGAGACCAAGAAAAAAGAGGTTACTGCTGCAGAAGCCCAGAATAAAGATATAAAGAAGCAATTTGATGAGCTCTTCCTTGAGCACCTTAGCTTACTTGAGAAGAACGATACTTTAAACAACCAGTTGCAGTCATCAGGGACCAAAATCATACGGCTAGAATATGAAGTTTTGGCCAAGACAAGAGACTTGAAAGCTGCTGAAGCCAATGATATTACTTTAAGGAAGGATAAGAAAACTTTGGAGGAGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

156

Amino Acids

18.16

Weight (kDa)

6.0

Isoelectric Point (pI)

32.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0012667)

Species	Orthologous Gene IDs
prunus_persica	Prupe.4G018000_v2.0.a1 Prupe.4G018000_v2.0.a1
pyrus_communis	pycom10g27460
rosa_laevigata	RLG00000031043
rosa_multiflora	Rmu_sc0009084.1_g000005
rosa_roxburghii	Rroxscaffold_1G00073290 Rroxscaffold_1G00073300 Rroxscaffold_1G00073320
rosa_rugosa	Rorug04G0397000 Rorug04G0397100 Rorug04G0397200
rosa_samantha	Rh5AG020600 Rh5AG020800 Rh5BG023400 Rh5CG022600 Rh5CG022800 Rh5DG021700
rosa_wichuraiana	Rw5G001900 Rw5G001920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	390
AcuI	CTGAAG	1 cut(s)	438
AgsI	TTSAA	2 cut(s)	22, 409
AjnI	CCWGG	2 cut(s)	9, 158
AjuI	GAANNNNNNNTTGG	2 cut(s)	41, 73
AluBI	AGCT	3 cut(s)	289, 309, 413
AluI	AGCT	3 cut(s)	289, 309, 413
Alw21I	GWGCWC	4 cut(s)	95, 207, 291, 303
Alw26I	GTCTC	2 cut(s)	215, 396
AoxI	GGCC	1 cut(s)	390
ApeKI	GCWGC	2 cut(s)	245, 413
AspS9I	GGNCC	1 cut(s)	357
AvaII	GGWCC	1 cut(s)	357
BalI	TGGCCA	1 cut(s)	392
BanII	GRGCYC	1 cut(s)	291
Bbv12I	GWGCWC	4 cut(s)	95, 207, 291, 303
BbvI	GCAGC	2 cut(s)	232, 400
BceAI	ACGGC	1 cut(s)	386
BcgI	CGANNNNNNTGC	2 cut(s)	82, 116
BciT130I	CCWGG	2 cut(s)	11, 160
BcoDI	GTCTC	2 cut(s)	215, 396
BfaI	CTAG	1 cut(s)	374
BfmI	CTRYAG	1 cut(s)	246
BisI	GCNGC	2 cut(s)	246, 414
BlsI	GCNGC	2 cut(s)	247, 415
Bme1390I	CCNGG	2 cut(s)	11, 160
Bme18I	GGWCC	1 cut(s)	357
BmgT120I	GGNCC	1 cut(s)	357
BmiI	GGNNCC	1 cut(s)	358
BmrFI	CCNGG	2 cut(s)	11, 160
BmsI	GCATC	1 cut(s)	4
BplI	GAGNNNNNCTC	2 cut(s)	21, 53
Bpu10I	CCTNAGC	1 cut(s)	305
BpuEI	CTTGAG	4 cut(s)	143, 239, 317, 335
BsaI	GGTCTC	1 cut(s)	215
BsaXI	ACNNNNNCTCC	1 cut(s)	452
Bse1I	ACTGG	1 cut(s)	340
BseBI	CCWGG	2 cut(s)	11, 160
BseGI	GGATG	1 cut(s)	19
BseNI	ACTGG	1 cut(s)	340
BseXI	GCAGC	2 cut(s)	232, 400
BshFI	GGCC	1 cut(s)	392
BsiHKAI	GWGCWC	4 cut(s)	95, 207, 291, 303
BslFI	GGGAC	1 cut(s)	370
BsmAI	GTCTC	2 cut(s)	215, 396
BsmFI	GGGAC	1 cut(s)	370
BsnI	GGCC	1 cut(s)	392
Bso31I	GGTCTC	1 cut(s)	215
Bsp1286I	GDGCHC	4 cut(s)	95, 207, 291, 303
Bsp143I	GATC	1 cut(s)	126
BspANI	GGCC	1 cut(s)	392
BspLI	GGNNCC	1 cut(s)	358
BspMAI	CTGCAG	1 cut(s)	250
BspQI	GCTCTTC	2 cut(s)	74, 296
BspTNI	GGTCTC	1 cut(s)	215
BsrI	ACTGG	1 cut(s)	340
BssMI	GATC	1 cut(s)	126
Bst2UI	CCWGG	2 cut(s)	11, 160
Bst6I	CTCTTC	3 cut(s)	22, 74, 296
BstDEI	CTNAG	2 cut(s)	173, 305
BstF5I	GGATG	1 cut(s)	19
BstKTI	GATC	1 cut(s)	129
BstMAI	GTCTC	2 cut(s)	215, 396
BstMBI	GATC	1 cut(s)	126
BstMWI	GCNNNNNNNGC	2 cut(s)	251, 419
BstNI	CCWGG	2 cut(s)	11, 160
BstSCI	CCNGG	2 cut(s)	9, 158
BstSFI	CTRYAG	1 cut(s)	246
BstV1I	GCAGC	2 cut(s)	232, 400
BsuRI	GGCC	1 cut(s)	392
BtsCI	GGATG	1 cut(s)	19
Cfr13I	GGNCC	1 cut(s)	357
CviJI	RGCY	9 cut(s)	37, 158, 254, 289, 309, 373, 392, 413, 422
CviKI_1	RGCY	9 cut(s)	37, 158, 254, 289, 309, 373, 392, 413, 422
DdeI	CTNAG	2 cut(s)	173, 305
DpnI	GATC	1 cut(s)	128
DpnII	GATC	1 cut(s)	126
DraI	TTTAAA	1 cut(s)	333
EaeI	YGGCCR	1 cut(s)	390
Eam1104I	CTCTTC	3 cut(s)	22, 74, 296
EarI	CTCTTC	3 cut(s)	22, 74, 296
Ecl136II	GAGCTC	1 cut(s)	289
Eco24I	GRGCYC	1 cut(s)	291
Eco31I	GGTCTC	1 cut(s)	215
Eco47I	GGWCC	1 cut(s)	357
Eco53kI	GAGCTC	1 cut(s)	289
Eco57I	CTGAAG	1 cut(s)	438
EcoICRI	GAGCTC	1 cut(s)	289
EcoRII	CCWGG	2 cut(s)	9, 158
EcoT38I	GRGCYC	1 cut(s)	291
FaiI	YATR	4 cut(s)	215, 269, 368, 381
FaqI	GGGAC	1 cut(s)	370
Fnu4HI	GCNGC	2 cut(s)	246, 414
FokI	GGATG	1 cut(s)	26
FriOI	GRGCYC	1 cut(s)	291
Fsp4HI	GCNGC	2 cut(s)	246, 414
FspBI	CTAG	1 cut(s)	374
GluI	GCNGC	2 cut(s)	246, 414
HaeIII	GGCC	1 cut(s)	392
HinfI	GANTC	1 cut(s)	99
Hpy166II	GTNNAC	2 cut(s)	79, 119
Hpy188III	TCNNGA	1 cut(s)	130
Hpy8I	GTNNAC	2 cut(s)	79, 119
HpyAV	CCTTC	1 cut(s)	436
HpyCH4V	TGCA	3 cut(s)	44, 248, 346
HpyF10VI	GCNNNNNNNGC	2 cut(s)	251, 419
HpyF3I	CTNAG	2 cut(s)	173, 305
Kzo9I	GATC	1 cut(s)	126
LguI	GCTCTTC	2 cut(s)	74, 296
LmnI	GCTCC	1 cut(s)	463
LpnPI	CCDG	7 cut(s)	23, 92, 145, 172, 269, 339, 353
Lsp1109I	GCAGC	2 cut(s)	232, 400
LweI	GCATC	1 cut(s)	4
MaeI	CTAG	1 cut(s)	374
MaeIII	GTNAC	1 cut(s)	238
MalI	GATC	1 cut(s)	128
MboI	GATC	1 cut(s)	126
MboII	GAAGA	5 cut(s)	39, 61, 145, 283, 331
MhlI	GDGCHC	4 cut(s)	95, 207, 291, 303
MlsI	TGGCCA	1 cut(s)	392
MluCI	AATT	1 cut(s)	278
MluNI	TGGCCA	1 cut(s)	392
MlyI	GAGTC	1 cut(s)	108
MnlI	CCTC	3 cut(s)	206, 229, 454
Mox20I	TGGCCA	1 cut(s)	392
MscI	TGGCCA	1 cut(s)	392
MseI	TTAA	3 cut(s)	144, 332, 437
Msp20I	TGGCCA	1 cut(s)	392
MspR9I	CCNGG	2 cut(s)	11, 160
MvaI	CCWGG	2 cut(s)	11, 160
MwoI	GCNNNNNNNGC	2 cut(s)	251, 419
NdeII	GATC	1 cut(s)	126
NlaIV	GGNNCC	1 cut(s)	358
PciSI	GCTCTTC	2 cut(s)	74, 296
PkrI	GCNGC	2 cut(s)	247, 415
PleI	GAGTC	1 cut(s)	107
PpsI	GAGTC	1 cut(s)	107
Psp124BI	GAGCTC	1 cut(s)	291
Psp6I	CCWGG	2 cut(s)	9, 158
PspGI	CCWGG	2 cut(s)	9, 158
PspN4I	GGNNCC	1 cut(s)	358
PspPI	GGNCC	1 cut(s)	357
PstI	CTGCAG	1 cut(s)	250
SacI	GAGCTC	1 cut(s)	291
SapI	GCTCTTC	2 cut(s)	74, 296
SaqAI	TTAA	3 cut(s)	144, 332, 437
SatI	GCNGC	2 cut(s)	246, 414
Sau3AI	GATC	1 cut(s)	126
Sau96I	GGNCC	1 cut(s)	357
SchI	GAGTC	1 cut(s)	108
ScrFI	CCNGG	2 cut(s)	11, 160
SduI	GDGCHC	4 cut(s)	95, 207, 291, 303
SetI	ASST	7 cut(s)	111, 144, 240, 291, 306, 311, 415
SfaNI	GCATC	1 cut(s)	4
SfcI	CTRYAG	1 cut(s)	246
SinI	GGWCC	1 cut(s)	357
SmlI	CTYRAG	4 cut(s)	122, 218, 296, 314
SmoI	CTYRAG	4 cut(s)	122, 218, 296, 314
Sse9I	AATT	1 cut(s)	278
SspMI	CTAG	1 cut(s)	374
SstI	GAGCTC	1 cut(s)	291
StyD4I	CCNGG	2 cut(s)	9, 158
TaqI	TCGA	1 cut(s)	102
TasI	AATT	1 cut(s)	278
Tru1I	TTAA	3 cut(s)	144, 332, 437
Tru9I	TTAA	3 cut(s)	144, 332, 437
TseI	GCWGC	2 cut(s)	245, 413
TspDTI	ATGAA	3 cut(s)	17, 75, 396
VpaK11BI	GGWCC	1 cut(s)	357
XspI	CTAG	1 cut(s)	374

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.