Rw5G001920

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0012667
Physical Location & Seq
Reverse (-)
1651414 .. 1653414
2001 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G001920.1

Sequence Viewer

Length: 912 bp
ATGCTTGCATTTTCGGCTTCGATAGCTTTGAAGAAGGCAGTGATGAAGTGCCTGGATGCGTTCAAGGGAAGAGATTGGCTCAATGCAGAGAATATCGTTTTGGGATTGCTCTTCCTTGTGAACTTTGTTAGGATGATCCAGACGCCTAGCAACTGTCTTGATTTACTTTTCAGTGGTGTACTCATACTCCTTGTAAGAGTCATTCATGTTGCAGAAGCCAAGTCCCTTTCTGAAAATAATGGTCTTCTTGACGAAAATCAAATCTTAAAGAACCGGTTGGAGTCATTGGACACAGGACTCGACAAGCTAGAATCTGATCTCGAGACAAAGACAGAAGACGTAGAATGTGAACTTGAGATCAAGAAGAAAAAGGTTAATGATGTAGAAGCCAAGAATGTTTCTCTAAGAAAGCAACTTGCTGAGTTCCTCCTAGAGCACCATTGTATGCTTGAAACCAAGAAAAAAGAGGTTACTGCTGCAGAAGCCCAGAATAAAGATATAAAGAAGCAATTTGATGAGCTCTTCCTTGAGCACCTTAGCTTACTTGAGAAGAACGATACTTTAAACAACCAGTTGCAGTCATCAGGGACCAAAATCGTACGGCTAGAATATGAAGTTTTGGCCAAGACAAGAGACTTGAAAGCTGCTGAAGCCAATGATATTACTTTAAGGAAGGATAAGAAAACTTTGGAGGAGCGGTTGCAGGCATGGGGCACAAAACTGAGACACATAGAAATCATAGAATCTGAACTTAACACAAGGAAAAGAAGTATCAGTTCATATGAAGCCAAAATTACTGATCTAAAAAACCAAGTTGAAGAGCTCTCTCTTCAACACGATTGTTTGCTTGGGAACAACCAAACTTTAAGGAACCAGCTGCGGTTGTCGCACACAAGACTTAGACAAACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

303

Amino Acids

34.74

Weight (kDa)

6.69

Isoelectric Point (pI)

35.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 697
AciI CCGC 2 cut(s) 697, 880
AclWI GGATC 1 cut(s) 130
AcoI YGGCCR 1 cut(s) 621
AcuI CTGAAG 1 cut(s) 669
AcyI GRCGYC 1 cut(s) 143
AfaI GTAC 2 cut(s) 180, 600
AgeI ACCGGT 1 cut(s) 273
AgsI TTSAA 6 cut(s) 31, 64, 452, 640, 818, 833
AjnI CCWGG 1 cut(s) 51
AjuI GAANNNNNNNTTGG 2 cut(s) 83, 115
AluBI AGCT 7 cut(s) 26, 307, 520, 540, 644, 823, 877
AluI AGCT 7 cut(s) 26, 307, 520, 540, 644, 823, 877
Alw21I GWGCWC 4 cut(s) 438, 522, 534, 825
Alw26I GTCTC 3 cut(s) 317, 627, 718
AlwI GGATC 1 cut(s) 130
Ama87I CYCGRG 1 cut(s) 320
AoxI GGCC 1 cut(s) 621
ApeKI GCWGC 3 cut(s) 476, 644, 877
AsiGI ACCGGT 1 cut(s) 273
AspS9I GGNCC 1 cut(s) 588
AvaI CYCGRG 1 cut(s) 320
AvaII GGWCC 1 cut(s) 588
BaeGI GKGCMC 1 cut(s) 716
BalI TGGCCA 1 cut(s) 623
BanII GRGCYC 2 cut(s) 522, 825
BbsI GAAGAC 2 cut(s) 236, 342
Bbv12I GWGCWC 4 cut(s) 438, 522, 534, 825
BbvI GCAGC 3 cut(s) 463, 631, 864
BceAI ACGGC 1 cut(s) 617
BciT130I CCWGG 1 cut(s) 53
BcoDI GTCTC 3 cut(s) 317, 627, 718
BfaI CTAG 4 cut(s) 147, 308, 431, 605
BfmI CTRYAG 1 cut(s) 477
BisI GCNGC 3 cut(s) 477, 645, 878
BlsI GCNGC 3 cut(s) 478, 646, 879
Bme1390I CCNGG 1 cut(s) 53
Bme18I GGWCC 1 cut(s) 588
BmeT110I CYCGRG 1 cut(s) 320
BmgT120I GGNCC 1 cut(s) 588
BmiI GGNNCC 2 cut(s) 589, 872
BmrFI CCNGG 1 cut(s) 53
BmsI GCATC 1 cut(s) 46
BpiI GAAGAC 2 cut(s) 236, 342
BplI GAGNNNNNCTC 2 cut(s) 63, 95
Bpu10I CCTNAGC 1 cut(s) 536
BpuEI CTTGAG 3 cut(s) 374, 548, 566
BsaHI GRCGYC 1 cut(s) 143
BsaWI WCCGGW 1 cut(s) 273
BsaXI ACNNNNNCTCC 4 cut(s) 171, 201, 683, 713
Bse118I RCCGGY 1 cut(s) 273
Bse1I ACTGG 1 cut(s) 571
BseBI CCWGG 1 cut(s) 53
BseGI GGATG 2 cut(s) 61, 138
BseMII CTCAG 2 cut(s) 411, 713
BseNI ACTGG 1 cut(s) 571
BseRI GAGGAG 1 cut(s) 707
BseSI GKGCMC 1 cut(s) 716
BseXI GCAGC 3 cut(s) 463, 631, 864
BshFI GGCC 1 cut(s) 623
BshTI ACCGGT 1 cut(s) 273
BsiHKAI GWGCWC 4 cut(s) 438, 522, 534, 825
BsiHKCI CYCGRG 1 cut(s) 320
BsiSI CCGG 1 cut(s) 274
BsiWI CGTACG 1 cut(s) 598
BslFI GGGAC 2 cut(s) 208, 601
BsmAI GTCTC 3 cut(s) 317, 627, 718
BsmFI GGGAC 2 cut(s) 208, 601
BsnI GGCC 1 cut(s) 623
BsoBI CYCGRG 1 cut(s) 320
Bsp1286I GDGCHC 5 cut(s) 438, 522, 534, 716, 825
Bsp143I GATC 4 cut(s) 135, 316, 357, 799
BspACI CCGC 2 cut(s) 697, 880
BspANI GGCC 1 cut(s) 623
BspCNI CTCAG 2 cut(s) 412, 714
BspLI GGNNCC 2 cut(s) 589, 872
BspMAI CTGCAG 1 cut(s) 481
BspPI GGATC 1 cut(s) 130
BspQI GCTCTTC 3 cut(s) 116, 527, 813
BsrBI CCGCTC 1 cut(s) 697
BsrFI RCCGGY 1 cut(s) 273
BsrI ACTGG 1 cut(s) 571
BssAI RCCGGY 1 cut(s) 273
BssMI GATC 4 cut(s) 135, 316, 357, 799
BssNI GRCGYC 1 cut(s) 143
Bst2UI CCWGG 1 cut(s) 53
Bst4CI ACNGT 1 cut(s) 155
Bst6I CTCTTC 5 cut(s) 64, 116, 527, 813, 834
BstACI GRCGYC 1 cut(s) 143
BstC8I GCNNGC 2 cut(s) 6, 705
BstDEI CTNAG 5 cut(s) 404, 420, 536, 722, 899
BstF5I GGATG 2 cut(s) 61, 138
BstKTI GATC 4 cut(s) 138, 319, 360, 802
BstMAI GTCTC 3 cut(s) 317, 627, 718
BstMBI GATC 4 cut(s) 135, 316, 357, 799
BstMWI GCNNNNNNNGC 5 cut(s) 14, 23, 482, 650, 886
BstNI CCWGG 1 cut(s) 53
BstSCI CCNGG 1 cut(s) 51
BstSFI CTRYAG 1 cut(s) 477
BstSLI GKGCMC 1 cut(s) 716
BstV1I GCAGC 3 cut(s) 463, 631, 864
BstV2I GAAGAC 2 cut(s) 236, 342
BsuRI GGCC 1 cut(s) 623
BtsCI GGATG 2 cut(s) 61, 138
BtsI GCAGTG 1 cut(s) 45
BtsIMutI CAGTG 2 cut(s) 45, 178
Cac8I GCNNGC 2 cut(s) 6, 705
Cfr10I RCCGGY 1 cut(s) 273
Cfr13I GGNCC 1 cut(s) 588
CseI GACGC 1 cut(s) 151
Csp6I GTAC 2 cut(s) 179, 599
CspAI ACCGGT 1 cut(s) 273
CviAII CATG 2 cut(s) 206, 708
CviQI GTAC 2 cut(s) 179, 599
DdeI CTNAG 5 cut(s) 404, 420, 536, 722, 899
DpnI GATC 4 cut(s) 137, 318, 359, 801
DpnII GATC 4 cut(s) 135, 316, 357, 799
DraI TTTAAA 1 cut(s) 564
EaeI YGGCCR 1 cut(s) 621
Eam1104I CTCTTC 5 cut(s) 64, 116, 527, 813, 834
EarI CTCTTC 5 cut(s) 64, 116, 527, 813, 834
Ecl136II GAGCTC 2 cut(s) 520, 823
Eco24I GRGCYC 2 cut(s) 522, 825
Eco47I GGWCC 1 cut(s) 588
Eco53kI GAGCTC 2 cut(s) 520, 823
Eco57I CTGAAG 1 cut(s) 669
Eco88I CYCGRG 1 cut(s) 320
EcoICRI GAGCTC 2 cut(s) 520, 823
EcoRII CCWGG 1 cut(s) 51
EcoT38I GRGCYC 2 cut(s) 522, 825
FaeI CATG 2 cut(s) 209, 711
FaqI GGGAC 2 cut(s) 208, 601
FatI CATG 2 cut(s) 205, 707
FauNDI CATATG 1 cut(s) 781
Fnu4HI GCNGC 3 cut(s) 477, 645, 878
FokI GGATG 2 cut(s) 68, 145
FriOI GRGCYC 2 cut(s) 522, 825
Fsp4HI GCNGC 3 cut(s) 477, 645, 878
FspBI CTAG 4 cut(s) 147, 308, 431, 605
GluI GCNGC 3 cut(s) 477, 645, 878
HaeIII GGCC 1 cut(s) 623
HapII CCGG 1 cut(s) 274
HgaI GACGC 1 cut(s) 151
Hin1I GRCGYC 1 cut(s) 143
Hin1II CATG 2 cut(s) 209, 711
HinfI GANTC 5 cut(s) 198, 281, 297, 311, 743
HpaII CCGG 1 cut(s) 274
Hpy166II GTNNAC 3 cut(s) 121, 179, 350
Hpy188I TCNGA 3 cut(s) 232, 316, 748
Hpy188III TCNNGA 6 cut(s) 139, 158, 248, 320, 322, 361
Hpy8I GTNNAC 3 cut(s) 121, 179, 350
HpyAV CCTTC 2 cut(s) 28, 667
HpyCH4III ACNGT 1 cut(s) 155
HpyCH4IV ACGT 1 cut(s) 339
HpyCH4V TGCA 6 cut(s) 8, 86, 212, 479, 577, 703
HpyF10VI GCNNNNNNNGC 5 cut(s) 14, 23, 482, 650, 886
HpyF3I CTNAG 5 cut(s) 404, 420, 536, 722, 899
HpySE526I ACGT 1 cut(s) 339
Hsp92I GRCGYC 1 cut(s) 143
Hsp92II CATG 2 cut(s) 209, 711
Kzo9I GATC 4 cut(s) 135, 316, 357, 799
LguI GCTCTTC 3 cut(s) 116, 527, 813
LmnI GCTCC 1 cut(s) 694
Lsp1109I GCAGC 3 cut(s) 463, 631, 864
LweI GCATC 1 cut(s) 46
MaeI CTAG 4 cut(s) 147, 308, 431, 605
MaeII ACGT 1 cut(s) 339
MaeIII GTNAC 1 cut(s) 469
MalI GATC 4 cut(s) 137, 318, 359, 801
MbiI CCGCTC 1 cut(s) 697
MboI GATC 4 cut(s) 135, 316, 357, 799
MhlI GDGCHC 5 cut(s) 438, 522, 534, 716, 825
MlsI TGGCCA 1 cut(s) 623
MluCI AATT 2 cut(s) 509, 792
MluNI TGGCCA 1 cut(s) 623
MlyI GAGTC 3 cut(s) 207, 290, 291
MmeI TCCRAC 1 cut(s) 258
MnlI CCTC 3 cut(s) 437, 460, 685
Mox20I TGGCCA 1 cut(s) 623
MscI TGGCCA 1 cut(s) 623
MseI TTAA 6 cut(s) 266, 375, 563, 668, 753, 866
Msp20I TGGCCA 1 cut(s) 623
MspA1I CMGCKG 1 cut(s) 877
MspI CCGG 1 cut(s) 274
MspR9I CCNGG 1 cut(s) 53
MvaI CCWGG 1 cut(s) 53
MwoI GCNNNNNNNGC 5 cut(s) 14, 23, 482, 650, 886
NdeI CATATG 1 cut(s) 781
NdeII GATC 4 cut(s) 135, 316, 357, 799
NlaIII CATG 2 cut(s) 209, 711
NlaIV GGNNCC 2 cut(s) 589, 872
PaeR7I CTCGAG 1 cut(s) 320
PciSI GCTCTTC 3 cut(s) 116, 527, 813
PfeI GAWTC 2 cut(s) 311, 743
Pfl23II CGTACG 1 cut(s) 598
PinAI ACCGGT 1 cut(s) 273
PkrI GCNGC 3 cut(s) 478, 646, 879
PleI GAGTC 3 cut(s) 206, 289, 291
PpsI GAGTC 3 cut(s) 206, 289, 291
Psp124BI GAGCTC 2 cut(s) 522, 825
Psp6I CCWGG 1 cut(s) 51
PspGI CCWGG 1 cut(s) 51
PspLI CGTACG 1 cut(s) 598
PspN4I GGNNCC 2 cut(s) 589, 872
PspPI GGNCC 1 cut(s) 588
PstI CTGCAG 1 cut(s) 481
PvuII CAGCTG 1 cut(s) 877
RsaI GTAC 2 cut(s) 180, 600
RsaNI GTAC 2 cut(s) 179, 599
SacI GAGCTC 2 cut(s) 522, 825
SapI GCTCTTC 3 cut(s) 116, 527, 813
SaqAI TTAA 6 cut(s) 266, 375, 563, 668, 753, 866
SatI GCNGC 3 cut(s) 477, 645, 878
Sau3AI GATC 4 cut(s) 135, 316, 357, 799
Sau96I GGNCC 1 cut(s) 588
SchI GAGTC 3 cut(s) 207, 290, 291
ScrFI CCNGG 1 cut(s) 53
SduI GDGCHC 5 cut(s) 438, 522, 534, 716, 825
SfaNI GCATC 1 cut(s) 46
SfcI CTRYAG 1 cut(s) 477
Sfr274I CTCGAG 1 cut(s) 320
SinI GGWCC 1 cut(s) 588
SlaI CTCGAG 1 cut(s) 320
SmlI CTYRAG 4 cut(s) 320, 353, 527, 545
SmoI CTYRAG 4 cut(s) 320, 353, 527, 545
Sse9I AATT 2 cut(s) 509, 792
SsiI CCGC 2 cut(s) 697, 880
SspMI CTAG 4 cut(s) 147, 308, 431, 605
SstI GAGCTC 2 cut(s) 522, 825
StyD4I CCNGG 1 cut(s) 51
TaaI ACNGT 1 cut(s) 155
TaiI ACGT 1 cut(s) 342
TaqI TCGA 3 cut(s) 20, 300, 321
TasI AATT 2 cut(s) 509, 792
TatI WGTACW 1 cut(s) 178
TfiI GAWTC 2 cut(s) 311, 743
Tru1I TTAA 6 cut(s) 266, 375, 563, 668, 753, 866
Tru9I TTAA 6 cut(s) 266, 375, 563, 668, 753, 866
TscAI CASTG 2 cut(s) 45, 178
TseI GCWGC 3 cut(s) 476, 644, 877
TspDTI ATGAA 5 cut(s) 59, 194, 627, 768, 798
TspRI CASTG 2 cut(s) 45, 178
VpaK11BI GGWCC 1 cut(s) 588
XhoI CTCGAG 1 cut(s) 320
XspI CTAG 4 cut(s) 147, 308, 431, 605
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.