Rroxscaffold_1G00073300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0012667
Physical Location & Seq
Forward (+)
94198255 .. 94198718
464 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00073300.1

Sequence Viewer

Length: 420 bp
ATGAAGAAGCAATTTGATGAGCTCTTCCTTGAGCACCTTAGCTTACTTGAGAAGAACGATACTTTAAACAACCAGTTGCAGTCATCAGGGACCAAAATCGTACGGCTAGATAAAGCTGCTGAAGCCAATGATATTACTTTAAGGAAGGATGGGGCATGGGGCACAAAACTTCTATGTGTCTCAATCATAGAATCTGAACTTAACACGAGGACAAGAATTGAAGAGCTCTCTCTTCAACACGATTGTTTGCTTGGGAGCAACCAAACTTTAAGGAACCAGGTGCAGTTGCCGCACACAAGACTTAGACAAACAGAATCAGAACTTGGGACCAAGACACAAGAAGTTTGTGTTGTAAAAACCAATATTGTTGCTCTAAATAAGGAAAATGATGATTTGAAGAACCAGTTGCGGTCATTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

139

Amino Acids

15.84

Weight (kDa)

6.3

Isoelectric Point (pI)

41.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 290, 409
AcuI CTGAAG 1 cut(s) 141
AfaI GTAC 1 cut(s) 102
AgsI TTSAA 3 cut(s) 221, 236, 397
AjnI CCWGG 1 cut(s) 276
AjuI GAANNNNNNNTTGG 2 cut(s) 306, 338
AluBI AGCT 4 cut(s) 22, 42, 116, 226
AluI AGCT 4 cut(s) 22, 42, 116, 226
Alw21I GWGCWC 3 cut(s) 24, 36, 228
Alw26I GTCTC 1 cut(s) 184
ApeKI GCWGC 1 cut(s) 116
AspS9I GGNCC 2 cut(s) 90, 327
AvaII GGWCC 2 cut(s) 90, 327
BaeGI GKGCMC 1 cut(s) 164
BanII GRGCYC 2 cut(s) 24, 228
BauI CACGAG 1 cut(s) 205
Bbv12I GWGCWC 3 cut(s) 24, 36, 228
BbvI GCAGC 1 cut(s) 103
BccI CCATC 1 cut(s) 143
BceAI ACGGC 1 cut(s) 119
BciT130I CCWGG 1 cut(s) 278
BcoDI GTCTC 1 cut(s) 184
BfaI CTAG 1 cut(s) 107
BisI GCNGC 2 cut(s) 117, 290
BlsI GCNGC 2 cut(s) 118, 291
Bme1390I CCNGG 1 cut(s) 278
Bme18I GGWCC 2 cut(s) 90, 327
BmgT120I GGNCC 2 cut(s) 90, 327
BmiI GGNNCC 3 cut(s) 91, 275, 328
BmrFI CCNGG 1 cut(s) 278
Bpu10I CCTNAGC 1 cut(s) 38
BpuEI CTTGAG 2 cut(s) 50, 68
Bse1I ACTGG 2 cut(s) 73, 403
BseBI CCWGG 1 cut(s) 278
BseGI GGATG 1 cut(s) 154
BseNI ACTGG 2 cut(s) 73, 403
BseSI GKGCMC 1 cut(s) 164
BseXI GCAGC 1 cut(s) 103
BsgI GTGCAG 1 cut(s) 302
BsiHKAI GWGCWC 3 cut(s) 24, 36, 228
BsiWI CGTACG 1 cut(s) 100
BslFI GGGAC 2 cut(s) 103, 340
BsmAI GTCTC 1 cut(s) 184
BsmFI GGGAC 2 cut(s) 103, 340
Bsp1286I GDGCHC 4 cut(s) 24, 36, 164, 228
BspACI CCGC 2 cut(s) 290, 409
BspLI GGNNCC 3 cut(s) 91, 275, 328
BspQI GCTCTTC 2 cut(s) 29, 216
BsrI ACTGG 2 cut(s) 73, 403
BssSI CACGAG 1 cut(s) 205
Bst2BI CACGAG 1 cut(s) 205
Bst2UI CCWGG 1 cut(s) 278
Bst6I CTCTTC 3 cut(s) 29, 216, 237
BstDEI CTNAG 2 cut(s) 38, 302
BstF5I GGATG 1 cut(s) 154
BstMAI GTCTC 1 cut(s) 184
BstMWI GCNNNNNNNGC 2 cut(s) 122, 289
BstNI CCWGG 1 cut(s) 278
BstSCI CCNGG 1 cut(s) 276
BstSLI GKGCMC 1 cut(s) 164
BstV1I GCAGC 1 cut(s) 103
BtsCI GGATG 1 cut(s) 154
Cfr13I GGNCC 2 cut(s) 90, 327
CsiI ACCWGGT 1 cut(s) 276
Csp6I GTAC 1 cut(s) 101
CviAII CATG 1 cut(s) 156
CviJI RGCY 6 cut(s) 22, 42, 106, 116, 125, 226
CviKI_1 RGCY 6 cut(s) 22, 42, 106, 116, 125, 226
CviQI GTAC 1 cut(s) 101
DdeI CTNAG 2 cut(s) 38, 302
DraI TTTAAA 1 cut(s) 66
Eam1104I CTCTTC 3 cut(s) 29, 216, 237
EarI CTCTTC 3 cut(s) 29, 216, 237
Ecl136II GAGCTC 2 cut(s) 22, 226
Eco24I GRGCYC 2 cut(s) 24, 228
Eco47I GGWCC 2 cut(s) 90, 327
Eco53kI GAGCTC 2 cut(s) 22, 226
Eco57I CTGAAG 1 cut(s) 141
EcoICRI GAGCTC 2 cut(s) 22, 226
EcoRII CCWGG 1 cut(s) 276
EcoT38I GRGCYC 2 cut(s) 24, 228
FaeI CATG 1 cut(s) 159
FaiI YATR 4 cut(s) 157, 175, 188, 418
FaqI GGGAC 2 cut(s) 103, 340
FatI CATG 1 cut(s) 155
Fnu4HI GCNGC 2 cut(s) 117, 290
FokI GGATG 1 cut(s) 161
FriOI GRGCYC 2 cut(s) 24, 228
Fsp4HI GCNGC 2 cut(s) 117, 290
FspBI CTAG 1 cut(s) 107
GluI GCNGC 2 cut(s) 117, 290
Hin1II CATG 1 cut(s) 159
HinfI GANTC 2 cut(s) 191, 314
Hpy188I TCNGA 2 cut(s) 196, 319
HpyAV CCTTC 1 cut(s) 139
HpyCH4V TGCA 2 cut(s) 79, 283
HpyF10VI GCNNNNNNNGC 2 cut(s) 122, 289
HpyF3I CTNAG 2 cut(s) 38, 302
Hsp92II CATG 1 cut(s) 159
LguI GCTCTTC 2 cut(s) 29, 216
LmnI GCTCC 1 cut(s) 255
LpnPI CCDG 5 cut(s) 72, 86, 263, 290, 416
Lsp1109I GCAGC 1 cut(s) 103
MabI ACCWGGT 1 cut(s) 276
MaeI CTAG 1 cut(s) 107
MboII GAAGA 6 cut(s) 16, 16, 64, 224, 233, 409
MhlI GDGCHC 4 cut(s) 24, 36, 164, 228
MluCI AATT 2 cut(s) 11, 216
MnlI CCTC 1 cut(s) 201
MseI TTAA 4 cut(s) 65, 140, 201, 269
MspR9I CCNGG 1 cut(s) 278
MvaI CCWGG 1 cut(s) 278
MwoI GCNNNNNNNGC 2 cut(s) 122, 289
NlaIII CATG 1 cut(s) 159
NlaIV GGNNCC 3 cut(s) 91, 275, 328
PciSI GCTCTTC 2 cut(s) 29, 216
PfeI GAWTC 2 cut(s) 191, 314
Pfl23II CGTACG 1 cut(s) 100
PkrI GCNGC 2 cut(s) 118, 291
Psp124BI GAGCTC 2 cut(s) 24, 228
Psp6I CCWGG 1 cut(s) 276
PspGI CCWGG 1 cut(s) 276
PspLI CGTACG 1 cut(s) 100
PspN4I GGNNCC 3 cut(s) 91, 275, 328
PspPI GGNCC 2 cut(s) 90, 327
RsaI GTAC 1 cut(s) 102
RsaNI GTAC 1 cut(s) 101
SacI GAGCTC 2 cut(s) 24, 228
SapI GCTCTTC 2 cut(s) 29, 216
SaqAI TTAA 4 cut(s) 65, 140, 201, 269
SatI GCNGC 2 cut(s) 117, 290
Sau96I GGNCC 2 cut(s) 90, 327
ScrFI CCNGG 1 cut(s) 278
SduI GDGCHC 4 cut(s) 24, 36, 164, 228
SetI ASST 6 cut(s) 24, 39, 44, 118, 228, 282
SexAI ACCWGGT 1 cut(s) 276
SinI GGWCC 2 cut(s) 90, 327
SmlI CTYRAG 2 cut(s) 29, 47
SmoI CTYRAG 2 cut(s) 29, 47
Sse9I AATT 2 cut(s) 11, 216
SsiI CCGC 2 cut(s) 290, 409
SspI AATATT 1 cut(s) 364
SspMI CTAG 1 cut(s) 107
SstI GAGCTC 2 cut(s) 24, 228
StyD4I CCNGG 1 cut(s) 276
TasI AATT 2 cut(s) 11, 216
TauI GCSGC 1 cut(s) 292
TfiI GAWTC 2 cut(s) 191, 314
Tru1I TTAA 4 cut(s) 65, 140, 201, 269
Tru9I TTAA 4 cut(s) 65, 140, 201, 269
TseI GCWGC 1 cut(s) 116
TspDTI ATGAA 1 cut(s) 17
VpaK11BI GGWCC 2 cut(s) 90, 327
XspI CTAG 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.