Rorug04G0397200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0012667
Physical Location & Seq
Forward (+)
56345217 .. 56347324
2108 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0397200.1

Sequence Viewer

Length: 1215 bp
ATGAAGGGCATGATGGCCAATCACAATGCTAGTGCTATAAATGCAACAGAAAATCCTAATGCCTTGAGTTGTTTCCCATCCTCATCTTCCTCTTCTTCTTCTTCACCTGGTTTTTCAATGGGGATGGTTTATGCAGATATGGGCTCCCTCTCCCTCAGTCCCTCCAACTATGGTCTAGTTTCTTCTCACGAGAGCAGTTATTACAATATCTCAAACTCAAACCTCTCTCATAATCATGAAGTGGAAAATGGTAATACACCATATTTCTGGGGGTTTCCGCCGTCTTTGGGAACCAGAAGCGTCGAGGAACACCACGGCCACCACAACAACAGTGACTTTCGCGGAGGCGGTAAGGCCTGTTCAGATAGCATGAGTGATGATGGGACTGAGGAACATAATGAGTCTATTAATCACAAAAATGGGCAGTCAAAACTGTGTGCCAGGGGGCATTGGAGGCCTGCAGAGGATTCCAAGCTCAAGGAACTCGTTGCTCTTTATGGTCCTCAGAATTGGAACCTTATAGCGGAGAAGCTGGAAGGAAGATCAGGGAAGAGCTGTAGACTGAGATGGTTTAACCAGCTGGACCCAAGGATCAACAGAAGAGCTTTCAGTGAAGAAGAGGAAGAGAGACTAATGCAGGCTCATAGAATATACGGCAACAAATGGGCCATGATAGCTAGACTCTTCCCTGGAAGAACCGATAATGCTGTGAAGAATCATTGGCATGTTATAATGGCCAGGAAGTACAGAGAACAGTCCAGTGCTTATAGGAGAAGGAAGCTTAGTCAATCTGTATACAGAGCTTCATCAATGGAGGAAAACATGAATTCAGCTCCTCCAGCAGTACCATACTCATATCTCAATAATTATGGGTCAAGTGGTAATTCACACAACATGGCCAGTTGGGAAGAAGCAGCAATAATCACAAACGAAAAGGTCCCTCCTCCTTTTCAATTCCTTCCTGGTACAAATGATGAAGCAGCTCAGATATCATCTGGTAATTTCTATGATCATCCACCATATATGATGAACGTGATGGCAATGCGACAGTCAAATTACTACCATACCCTTCAGAGTTACTCAGATTCAACATCAGCATCGCCAAGTCTAGTTTCGGCCGGCGGCAAACTCTCTTCTACATCATCAGCTGGAGATCAGGAAAGAAGAGACATTGCACCGTCCTTCATTGATTTTCTTGGGGTTGGAGCCACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

404

Amino Acids

44.84

Weight (kDa)

6.63

Isoelectric Point (pI)

63.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 148 - 194 6.2e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 151 - 211 2.5e-16 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 200 - 242 1.1e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 203 - 251 2.7e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 731
AccI GTMKAC 2 cut(s) 559, 795
AccII CGCG 1 cut(s) 342
AciI CCGC 5 cut(s) 278, 342, 348, 524, 1122
AclWI GGATC 1 cut(s) 599
AcoI YGGCCR 5 cut(s) 15, 316, 735, 897, 1116
AcsI RAATTY 1 cut(s) 826
AcuI CTGAAG 1 cut(s) 1055
AfaI GTAC 3 cut(s) 746, 846, 967
AfiI CCNNNNNNNGG 2 cut(s) 287, 523
AgsI TTSAA 3 cut(s) 117, 953, 1089
AjnI CCWGG 5 cut(s) 106, 440, 688, 737, 961
AjuI GAANNNNNNNTTGG 2 cut(s) 1096, 1128
Alw26I GTCTC 2 cut(s) 622, 1161
AlwI GGATC 1 cut(s) 599
AoxI GGCC 8 cut(s) 15, 316, 354, 455, 666, 735, 897, 1116
ApeKI GCWGC 2 cut(s) 914, 980
ApoI RAATTY 1 cut(s) 826
AseI ATTAAT 1 cut(s) 408
AspS9I GGNCC 4 cut(s) 500, 583, 666, 937
AsuHPI GGTGA 1 cut(s) 96
AvaII GGWCC 3 cut(s) 500, 583, 937
BalI TGGCCA 3 cut(s) 17, 737, 899
BanII GRGCYC 1 cut(s) 146
BauI CACGAG 1 cut(s) 188
BbvI GCAGC 2 cut(s) 926, 992
BccI CCATC 6 cut(s) 7, 85, 118, 374, 561, 1030
BceAI ACGGC 3 cut(s) 265, 331, 670
BciT130I CCWGG 5 cut(s) 108, 442, 690, 739, 963
BclI TGATCA 1 cut(s) 1009
BcoDI GTCTC 2 cut(s) 622, 1161
BfaI CTAG 4 cut(s) 30, 176, 678, 1109
BfmI CTRYAG 2 cut(s) 459, 556
BisI GCNGC 3 cut(s) 915, 981, 1123
BlsI GCNGC 3 cut(s) 916, 982, 1124
Bme1390I CCNGG 5 cut(s) 108, 442, 690, 739, 963
Bme18I GGWCC 3 cut(s) 500, 583, 937
BmgT120I GGNCC 4 cut(s) 500, 583, 666, 937
BmiI GGNNCC 6 cut(s) 145, 292, 515, 585, 939, 1207
BmrFI CCNGG 5 cut(s) 108, 442, 690, 739, 963
BmsI GCATC 1 cut(s) 1106
BpmI CTGGAG 2 cut(s) 822, 1170
BpuEI CTTGAG 2 cut(s) 85, 461
BsaJI CCNNGG 4 cut(s) 313, 441, 587, 688
Bsc4I CCNNNNNNNGG 2 cut(s) 287, 523
Bse118I RCCGGY 1 cut(s) 1118
Bse1I ACTGG 2 cut(s) 759, 900
Bse3DI GCAATG 2 cut(s) 1047, 1170
BseBI CCWGG 5 cut(s) 108, 442, 690, 739, 963
BseDI CCNNGG 4 cut(s) 313, 441, 587, 688
BseGI GGATG 3 cut(s) 77, 129, 1012
BseLI CCNNNNNNNGG 2 cut(s) 287, 523
BseMI GCAATG 2 cut(s) 1047, 1170
BseMII CTCAG 6 cut(s) 169, 378, 518, 554, 998, 1095
BseNI ACTGG 2 cut(s) 759, 900
BseRI GAGGAG 2 cut(s) 825, 933
BseX3I CGGCCG 1 cut(s) 1116
BseXI GCAGC 2 cut(s) 926, 992
Bsh1236I CGCG 1 cut(s) 342
Bsh1285I CGRYCG 1 cut(s) 1119
BshFI GGCC 8 cut(s) 17, 318, 356, 457, 668, 737, 899, 1118
BsiEI CGRYCG 1 cut(s) 1119
BsiSI CCGG 1 cut(s) 1119
BslFI GGGAC 3 cut(s) 144, 397, 923
BslI CCNNNNNNNGG 2 cut(s) 287, 523
BsmAI GTCTC 2 cut(s) 622, 1161
BsmFI GGGAC 3 cut(s) 144, 397, 923
BsnI GGCC 8 cut(s) 17, 318, 356, 457, 668, 737, 899, 1118
Bsp1286I GDGCHC 1 cut(s) 146
Bsp143I GATC 4 cut(s) 542, 591, 1009, 1153
BspACI CCGC 5 cut(s) 278, 342, 348, 524, 1122
BspANI GGCC 8 cut(s) 17, 318, 356, 457, 668, 737, 899, 1118
BspCNI CTCAG 6 cut(s) 168, 379, 517, 555, 997, 1094
BspFNI CGCG 1 cut(s) 342
BspHI TCATGA 1 cut(s) 235
BspLI GGNNCC 6 cut(s) 145, 292, 515, 585, 939, 1207
BspMAI CTGCAG 1 cut(s) 463
BspPI GGATC 1 cut(s) 599
BspQI GCTCTTC 2 cut(s) 545, 595
BsrDI GCAATG 2 cut(s) 1047, 1170
BsrFI RCCGGY 1 cut(s) 1118
BsrI ACTGG 2 cut(s) 759, 900
BssAI RCCGGY 1 cut(s) 1118
BssECI CCNNGG 4 cut(s) 313, 441, 587, 688
BssMI GATC 4 cut(s) 542, 591, 1009, 1153
BssNAI GTATAC 1 cut(s) 796
BssSI CACGAG 1 cut(s) 188
BssT1I CCWWGG 1 cut(s) 587
Bst1107I GTATAC 1 cut(s) 796
Bst2BI CACGAG 1 cut(s) 188
Bst2UI CCWGG 5 cut(s) 108, 442, 690, 739, 963
Bst4CI ACNGT 5 cut(s) 332, 435, 756, 1050, 1179
Bst6I CTCTTC 8 cut(s) 97, 545, 595, 612, 618, 689, 1138, 1159
BstC8I GCNNGC 3 cut(s) 459, 639, 1120
BstDEI CTNAG 7 cut(s) 155, 387, 504, 563, 782, 984, 1081
BstDSI CCRYGG 1 cut(s) 313
BstF5I GGATG 3 cut(s) 77, 129, 1012
BstFNI CGCG 1 cut(s) 342
BstKTI GATC 4 cut(s) 545, 594, 1012, 1156
BstMAI GTCTC 2 cut(s) 622, 1161
BstMBI GATC 4 cut(s) 542, 591, 1009, 1153
BstMCI CGRYCG 1 cut(s) 1119
BstMWI GCNNNNNNNGC 4 cut(s) 41, 454, 674, 839
BstNI CCWGG 5 cut(s) 108, 442, 690, 739, 963
BstNSI RCATGY 1 cut(s) 728
BstSCI CCNGG 5 cut(s) 106, 440, 688, 737, 961
BstSFI CTRYAG 2 cut(s) 459, 556
BstUI CGCG 1 cut(s) 342
BstV1I GCAGC 2 cut(s) 926, 992
BstXI CCANNNNNNTGG 1 cut(s) 267
BstZ17I GTATAC 1 cut(s) 796
BstZI CGGCCG 1 cut(s) 1116
BsuRI GGCC 8 cut(s) 17, 318, 356, 457, 668, 737, 899, 1118
BtgI CCRYGG 1 cut(s) 313
BtgZI GCGATG 1 cut(s) 1083
BtsCI GGATG 3 cut(s) 77, 129, 1012
BtsIMutI CAGTG 3 cut(s) 337, 616, 766
Cac8I GCNNGC 3 cut(s) 459, 639, 1120
CciI TCATGA 1 cut(s) 235
Cfr10I RCCGGY 1 cut(s) 1118
Cfr13I GGNCC 4 cut(s) 500, 583, 666, 937
CseI GACGC 1 cut(s) 289
CsiI ACCWGGT 1 cut(s) 106
Csp6I GTAC 3 cut(s) 745, 845, 966
CviAII CATG 8 cut(s) 10, 236, 370, 670, 725, 823, 895, 1212
CviQI GTAC 3 cut(s) 745, 845, 966
DdeI CTNAG 7 cut(s) 155, 387, 504, 563, 782, 984, 1081
DpnI GATC 4 cut(s) 544, 593, 1011, 1155
DpnII GATC 4 cut(s) 542, 591, 1009, 1153
EaeI YGGCCR 5 cut(s) 15, 316, 735, 897, 1116
EagI CGGCCG 1 cut(s) 1116
Eam1104I CTCTTC 8 cut(s) 97, 545, 595, 612, 618, 689, 1138, 1159
EarI CTCTTC 8 cut(s) 97, 545, 595, 612, 618, 689, 1138, 1159
EciI GGCGGA 1 cut(s) 267
EclXI CGGCCG 1 cut(s) 1116
Eco130I CCWWGG 1 cut(s) 587
Eco147I AGGCCT 2 cut(s) 356, 457
Eco24I GRGCYC 1 cut(s) 146
Eco32I GATATC 1 cut(s) 990
Eco47I GGWCC 3 cut(s) 500, 583, 937
Eco52I CGGCCG 1 cut(s) 1116
Eco57I CTGAAG 1 cut(s) 1055
EcoO109I RGGNCCY 1 cut(s) 937
EcoRI GAATTC 1 cut(s) 826
EcoRII CCWGG 5 cut(s) 106, 440, 688, 737, 961
EcoRV GATATC 1 cut(s) 990
EcoT14I CCWWGG 1 cut(s) 587
EcoT38I GRGCYC 1 cut(s) 146
ErhI CCWWGG 1 cut(s) 587
FaeI CATG 8 cut(s) 13, 239, 373, 673, 728, 826, 898, 1215
FaqI GGGAC 3 cut(s) 144, 397, 923
FatI CATG 8 cut(s) 9, 235, 369, 669, 724, 822, 894, 1211
FbaI TGATCA 1 cut(s) 1009
FblI GTMKAC 2 cut(s) 559, 795
Fnu4HI GCNGC 3 cut(s) 915, 981, 1123
FokI GGATG 3 cut(s) 64, 136, 999
FriOI GRGCYC 1 cut(s) 146
Fsp4HI GCNGC 3 cut(s) 915, 981, 1123
FspBI CTAG 4 cut(s) 30, 176, 678, 1109
GluI GCNGC 3 cut(s) 915, 981, 1123
GsuI CTGGAG 2 cut(s) 822, 1170
HaeIII GGCC 8 cut(s) 17, 318, 356, 457, 668, 737, 899, 1118
HapII CCGG 1 cut(s) 1119
HgaI GACGC 1 cut(s) 289
Hin1II CATG 8 cut(s) 13, 239, 373, 673, 728, 826, 898, 1215
HindIII AAGCTT 1 cut(s) 779
HinfI GANTC 5 cut(s) 401, 467, 681, 715, 1085
HpaII CCGG 1 cut(s) 1119
HphI GGTGA 1 cut(s) 96
Hpy166II GTNNAC 2 cut(s) 560, 796
Hpy188I TCNGA 5 cut(s) 364, 507, 987, 1074, 1084
Hpy188III TCNNGA 3 cut(s) 188, 236, 1157
Hpy8I GTNNAC 2 cut(s) 560, 796
Hpy99I CGWCG 1 cut(s) 305
HpyAV CCTTC 5 cut(s) 530, 768, 968, 1079, 1192
HpyCH4III ACNGT 5 cut(s) 332, 435, 756, 1050, 1179
HpyCH4IV ACGT 1 cut(s) 1032
HpyCH4V TGCA 5 cut(s) 44, 134, 461, 637, 1175
HpyF10VI GCNNNNNNNGC 4 cut(s) 41, 454, 674, 839
HpyF3I CTNAG 7 cut(s) 155, 387, 504, 563, 782, 984, 1081
HpySE526I ACGT 1 cut(s) 1032
Hsp92II CATG 8 cut(s) 13, 239, 373, 673, 728, 826, 898, 1215
KroI GCCGGC 1 cut(s) 1118
KroNI GCCGGC 1 cut(s) 1120
Ksp22I TGATCA 1 cut(s) 1009
Kzo9I GATC 4 cut(s) 542, 591, 1009, 1153
LguI GCTCTTC 2 cut(s) 545, 595
LmnI GCTCC 3 cut(s) 149, 838, 1205
Lsp1109I GCAGC 2 cut(s) 926, 992
LweI GCATC 1 cut(s) 1106
MabI ACCWGGT 1 cut(s) 106
MaeI CTAG 4 cut(s) 30, 176, 678, 1109
MaeII ACGT 1 cut(s) 1032
MaeIII GTNAC 2 cut(s) 332, 1076
MalI GATC 4 cut(s) 544, 593, 1011, 1155
MboI GATC 4 cut(s) 542, 591, 1009, 1153
MhlI GDGCHC 1 cut(s) 146
MlsI TGGCCA 3 cut(s) 17, 737, 899
MluCI AATT 7 cut(s) 508, 826, 865, 883, 953, 1000, 1054
MluNI TGGCCA 3 cut(s) 17, 737, 899
MlyI GAGTC 2 cut(s) 410, 675
MmeI TCCRAC 2 cut(s) 189, 1183
Mox20I TGGCCA 3 cut(s) 17, 737, 899
MroNI GCCGGC 1 cut(s) 1118
MscI TGGCCA 3 cut(s) 17, 737, 899
MseI TTAA 2 cut(s) 408, 573
MslI CAYNNNNRTG 3 cut(s) 234, 417, 723
Msp20I TGGCCA 3 cut(s) 17, 737, 899
MspA1I CMGCKG 2 cut(s) 580, 1148
MspI CCGG 1 cut(s) 1119
MspR9I CCNGG 5 cut(s) 108, 442, 690, 739, 963
MvaI CCWGG 5 cut(s) 108, 442, 690, 739, 963
MvnI CGCG 1 cut(s) 342
MwoI GCNNNNNNNGC 4 cut(s) 41, 454, 674, 839
NaeI GCCGGC 1 cut(s) 1120
NdeII GATC 4 cut(s) 542, 591, 1009, 1153
NgoMIV GCCGGC 1 cut(s) 1118
NlaIII CATG 8 cut(s) 13, 239, 373, 673, 728, 826, 898, 1215
NlaIV GGNNCC 6 cut(s) 145, 292, 515, 585, 939, 1207
NmuCI GTSAC 1 cut(s) 332
NspI RCATGY 1 cut(s) 728
PagI TCATGA 1 cut(s) 235
PceI AGGCCT 2 cut(s) 356, 457
PciSI GCTCTTC 2 cut(s) 545, 595
PdiI GCCGGC 1 cut(s) 1120
PfeI GAWTC 3 cut(s) 467, 715, 1085
PkrI GCNGC 3 cut(s) 916, 982, 1124
PleI GAGTC 2 cut(s) 409, 675
PpsI GAGTC 2 cut(s) 409, 675
PpuMI RGGWCCY 1 cut(s) 937
PshBI ATTAAT 1 cut(s) 408
PsiI TTATAA 1 cut(s) 731
Psp5II RGGWCCY 1 cut(s) 937
Psp6I CCWGG 5 cut(s) 106, 440, 688, 737, 961
PspGI CCWGG 5 cut(s) 106, 440, 688, 737, 961
PspN4I GGNNCC 6 cut(s) 145, 292, 515, 585, 939, 1207
PspPI GGNCC 4 cut(s) 500, 583, 666, 937
PspPPI RGGWCCY 1 cut(s) 937
PsrI GAACNNNNNNTAC 2 cut(s) 343, 375
PstI CTGCAG 1 cut(s) 463
PvuII CAGCTG 2 cut(s) 580, 1148
RsaI GTAC 3 cut(s) 746, 846, 967
RsaNI GTAC 3 cut(s) 745, 845, 966
RseI CAYNNNNRTG 3 cut(s) 234, 417, 723
SapI GCTCTTC 2 cut(s) 545, 595
SaqAI TTAA 2 cut(s) 408, 573
SatI GCNGC 3 cut(s) 915, 981, 1123
Sau3AI GATC 4 cut(s) 542, 591, 1009, 1153
Sau96I GGNCC 4 cut(s) 500, 583, 666, 937
SchI GAGTC 2 cut(s) 410, 675
ScrFI CCNGG 5 cut(s) 108, 442, 690, 739, 963
SduI GDGCHC 1 cut(s) 146
SexAI ACCWGGT 1 cut(s) 106
SfaNI GCATC 1 cut(s) 1106
SfcI CTRYAG 2 cut(s) 459, 556
SinI GGWCC 3 cut(s) 500, 583, 937
SmiMI CAYNNNNRTG 3 cut(s) 234, 417, 723
SmlI CTYRAG 2 cut(s) 64, 476
SmoI CTYRAG 2 cut(s) 64, 476
Sse9I AATT 7 cut(s) 508, 826, 865, 883, 953, 1000, 1054
SseBI AGGCCT 2 cut(s) 356, 457
SsiI CCGC 5 cut(s) 278, 342, 348, 524, 1122
SspMI CTAG 4 cut(s) 30, 176, 678, 1109
StuI AGGCCT 2 cut(s) 356, 457
StyD4I CCNGG 5 cut(s) 106, 440, 688, 737, 961
StyI CCWWGG 1 cut(s) 587
TaaI ACNGT 5 cut(s) 332, 435, 756, 1050, 1179
TaiI ACGT 1 cut(s) 1035
TaqI TCGA 1 cut(s) 303
TasI AATT 7 cut(s) 508, 826, 865, 883, 953, 1000, 1054
TatI WGTACW 1 cut(s) 744
TauI GCSGC 1 cut(s) 1125
TfiI GAWTC 3 cut(s) 467, 715, 1085
Tru1I TTAA 2 cut(s) 408, 573
Tru9I TTAA 2 cut(s) 408, 573
TscAI CASTG 3 cut(s) 337, 616, 766
TseFI GTSAC 1 cut(s) 332
TseI GCWGC 2 cut(s) 914, 980
Tsp45I GTSAC 1 cut(s) 332
TspDTI ATGAA 7 cut(s) 17, 252, 795, 839, 990, 1043, 1174
TspRI CASTG 3 cut(s) 337, 616, 766
VpaK11BI GGWCC 3 cut(s) 500, 583, 937
VspI ATTAAT 1 cut(s) 408
XapI RAATTY 1 cut(s) 826
XceI RCATGY 1 cut(s) 728
XmiI GTMKAC 2 cut(s) 559, 795
XspI CTAG 4 cut(s) 30, 176, 678, 1109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.