Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0005786

Physical Location & Seq

Genomic Coordinates Forward (+)

28504106 .. 28506333

Gene Structure 2228 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g27590.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGGCTGATCACCCATCTGCTAACTCGCTCTCTGTGACTCGCTGGCTCACTGAGTTCGTGCTAATCGCCTCGACTTTGGCTGCTCTGCCTCTCGTTAGTGGCACCACTGATGCTTCTGATGTTCGAGCACTTCAGGTATTGTACACTTCGGTAAACAGTCCTTCTCAGCTAACCGGTTGGAAAAGTAGTGGCGGTGATCCGTGTGGAGAGTCATGGAAAGGGGTAACTTGTGAGGGCTCAGCTGTTGTTTCAGTAGAGGTTTCCGGGTTAGGTCTCAGTGGAACTATGGGATACTTGCTTTCTGACCTGCTATCATTGTTAAAACTTGATTTGAGCGACAACAATTTTCATGACACAATCCCGTATCAGCTACCGCCAAATCTTACAAGCCTAAATCTTGCAAGGAACAACTTCACTGGAAATTTACCTTATTCTATGGCCAACATGGTTTCTCTCAGTTATTTGAATGTTAGCCGTAACTCACTATCCGAGTCAATTGGTGACATTTTTGCTCAACTTGCGGGCCTTGCTACCTTGGATCTATCTCTTAACAACTTTACCAGTGATATTCCTAATTCCTTTAGTTCATTGTCCAATCTTTCTTCCCTCTATATGCAGAACAATCAACTGACTGGTACTCTCAATGTTCTGACGGGTTTGCCTTTGACTACTTTAAATGTTGCCAACAACCATTTCAGCGGATGGATACCCCAAGAGCTTAGTTCAATTCGTACTTTTATAGTTATGATGGAAATGGTTTTGATAATGGTCCTGCTCCTCCACCACCACCATATATCCCACCTCCCCCAGGAAGATCTACTAAGAATCGCAGTCGTTCCGGATCTAGAACACCCCCACAGGGATCTGATGGCCAATCACATGATTCAAAAAATGGGCTGGCTGTTGGGGCTTTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

306

Amino Acids

33.19

Weight (kDa)

5.17

Isoelectric Point (pI)

30.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005786)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G22130 AT4G22130
fragaria_vesca	FvH4_3g01460 FvH4_3g01460 FvH4_3g01460 FvH4_3g01460 FvH4_3g01460 FvH4_3g01460 FvH4_3g01460
malus_domestica	MD05G1351900.v1.1 MD10G1326000.v1.1
prunus_persica	Prupe.4G015700_v2.0.a1 Prupe.4G015700_v2.0.a1 Prupe.4G015700_v2.0.a1
pyrus_communis	pycom05g31890 pycom10g27590 pycom10g27600
rosa_chinensis	RchiOBHm_Chr5g0002301
rosa_laevigata	RLG00000031016
rosa_multiflora	Rmu_sc0001492.1_g000010
rosa_roxburghii	Rroxscaffold_1G00073570 Rroxscaffold_1G00073600
rosa_rugosa	Rorug04G0395200
rosa_samantha	Rh5AG017900 Rh5BG020500 Rh5CG019700 Rh5DG018600
rosa_wichuraiana	Rw5G001680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	315
AccB1I	GGYRCC	1 cut(s)	101
AccIII	TCCGGA	1 cut(s)	838
AciI	CCGC	4 cut(s)	192, 374, 521, 699
AclWI	GGATC	4 cut(s)	191, 546, 849, 870
AcoI	YGGCCR	2 cut(s)	438, 870
AcsI	RAATTY	1 cut(s)	421
AcuI	CTGAAG	1 cut(s)	116
AfaI	GTAC	3 cut(s)	143, 637, 733
AfiI	CCNNNNNNNGG	2 cut(s)	808, 859
AgeI	ACCGGT	1 cut(s)	173
AgsI	TTSAA	3 cut(s)	466, 726, 887
AjnI	CCWGG	1 cut(s)	807
AjuI	GAANNNNNNNTTGG	2 cut(s)	677, 709
AluBI	AGCT	4 cut(s)	169, 242, 370, 718
AluI	AGCT	4 cut(s)	169, 242, 370, 718
Alw21I	GWGCWC	1 cut(s)	130
Alw26I	GTCTC	1 cut(s)	278
AlwI	GGATC	4 cut(s)	191, 546, 849, 870
Aor13HI	TCCGGA	1 cut(s)	838
AoxI	GGCC	3 cut(s)	438, 523, 870
ApeKI	GCWGC	1 cut(s)	80
ApoI	RAATTY	1 cut(s)	421
AsiGI	ACCGGT	1 cut(s)	173
Asp700I	GAANNNNTTC	1 cut(s)	410
AspS9I	GGNCC	2 cut(s)	523, 769
AsuC2I	CCSGG	1 cut(s)	265
AsuHPI	GGTGA	2 cut(s)	206, 512
AvaII	GGWCC	1 cut(s)	769
BalI	TGGCCA	2 cut(s)	440, 872
BanI	GGYRCC	1 cut(s)	101
BanII	GRGCYC	1 cut(s)	239
Bbv12I	GWGCWC	1 cut(s)	130
BbvI	GCAGC	1 cut(s)	67
BccI	CCATC	4 cut(s)	22, 696, 742, 862
BceAI	ACGGC	1 cut(s)	459
BciT130I	CCWGG	1 cut(s)	809
BciVI	GTATCC	2 cut(s)	284, 699
BclI	TGATCA	1 cut(s)	7
BcnI	CCSGG	1 cut(s)	265
BcoDI	GTCTC	1 cut(s)	278
BfaI	CTAG	1 cut(s)	845
BfuAI	ACCTGC	1 cut(s)	315
BfuI	GTATCC	2 cut(s)	284, 699
BglII	AGATCT	1 cut(s)	814
BisI	GCNGC	1 cut(s)	81
BlpI	GCTNAGC	1 cut(s)	238
BlsI	GCNGC	1 cut(s)	82
Bme1390I	CCNGG	2 cut(s)	265, 809
Bme18I	GGWCC	1 cut(s)	769
BmgT120I	GGNCC	2 cut(s)	523, 769
BmiI	GGNNCC	1 cut(s)	103
BmrFI	CCNGG	2 cut(s)	265, 809
BmsI	GCATC	1 cut(s)	100
Bpu1102I	GCTNAGC	1 cut(s)	238
BpuMI	CCSGG	1 cut(s)	265
BsaI	GGTCTC	1 cut(s)	278
BsaJI	CCNNGG	2 cut(s)	534, 807
BsaWI	WCCGGW	2 cut(s)	173, 838
Bsc4I	CCNNNNNNNGG	2 cut(s)	808, 859
Bse118I	RCCGGY	1 cut(s)	173
Bse1I	ACTGG	3 cut(s)	421, 561, 637
BseAI	TCCGGA	1 cut(s)	838
BseBI	CCWGG	1 cut(s)	809
BseDI	CCNNGG	2 cut(s)	534, 807
BseGI	GGATG	1 cut(s)	707
BseLI	CCNNNNNNNGG	2 cut(s)	808, 859
BseMII	CTCAG	5 cut(s)	42, 179, 252, 289, 469
BseNI	ACTGG	3 cut(s)	421, 561, 637
BseRI	GAGGAG	1 cut(s)	767
BseXI	GCAGC	1 cut(s)	67
BshFI	GGCC	3 cut(s)	440, 525, 872
BshNI	GGYRCC	1 cut(s)	101
BshTI	ACCGGT	1 cut(s)	173
BsiHKAI	GWGCWC	1 cut(s)	130
BsiSI	CCGG	3 cut(s)	174, 264, 839
BslI	CCNNNNNNNGG	2 cut(s)	808, 859
BsmAI	GTCTC	1 cut(s)	278
BsnI	GGCC	3 cut(s)	440, 525, 872
Bso31I	GGTCTC	1 cut(s)	278
Bsp1286I	GDGCHC	2 cut(s)	130, 239
Bsp13I	TCCGGA	1 cut(s)	838
Bsp1407I	TGTACA	1 cut(s)	141
Bsp143I	GATC	6 cut(s)	7, 196, 538, 814, 841, 862
Bsp1720I	GCTNAGC	1 cut(s)	238
BspACI	CCGC	4 cut(s)	192, 374, 521, 699
BspANI	GGCC	3 cut(s)	440, 525, 872
BspCNI	CTCAG	5 cut(s)	43, 178, 251, 288, 468
BspEI	TCCGGA	1 cut(s)	838
BspHI	TCATGA	1 cut(s)	349
BspLI	GGNNCC	1 cut(s)	103
BspMI	ACCTGC	1 cut(s)	315
BspPI	GGATC	4 cut(s)	191, 546, 849, 870
BspT107I	GGYRCC	1 cut(s)	101
BspTNI	GGTCTC	1 cut(s)	278
BsrFI	RCCGGY	1 cut(s)	173
BsrGI	TGTACA	1 cut(s)	141
BsrI	ACTGG	3 cut(s)	421, 561, 637
BssAI	RCCGGY	1 cut(s)	173
BssECI	CCNNGG	2 cut(s)	534, 807
BssMI	GATC	6 cut(s)	7, 196, 538, 814, 841, 862
BssT1I	CCWWGG	1 cut(s)	534
Bst2UI	CCWGG	1 cut(s)	809
Bst4CI	ACNGT	1 cut(s)	158
BstAUI	TGTACA	1 cut(s)	141
BstC8I	GCNNGC	3 cut(s)	44, 523, 899
BstDEI	CTNAG	7 cut(s)	51, 165, 238, 275, 455, 719, 821
BstENI	CCTNNNNNAGG	1 cut(s)	806
BstF5I	GGATG	1 cut(s)	707
BstKTI	GATC	6 cut(s)	10, 199, 541, 817, 844, 865
BstMAI	GTCTC	1 cut(s)	278
BstMBI	GATC	6 cut(s)	7, 196, 538, 814, 841, 862
BstMWI	GCNNNNNNNGC	3 cut(s)	518, 527, 907
BstNI	CCWGG	1 cut(s)	809
BstSCI	CCNGG	2 cut(s)	263, 807
BstV1I	GCAGC	1 cut(s)	67
BstX2I	RGATCY	4 cut(s)	538, 814, 841, 862
BstYI	RGATCY	4 cut(s)	538, 814, 841, 862
BsuI	GTATCC	2 cut(s)	284, 699
BsuRI	GGCC	3 cut(s)	440, 525, 872
BtsCI	GGATG	1 cut(s)	707
BtsIMutI	CAGTG	5 cut(s)	48, 105, 283, 414, 568
BveI	ACCTGC	1 cut(s)	315
Cac8I	GCNNGC	3 cut(s)	44, 523, 899
CciI	TCATGA	1 cut(s)	349
Cfr10I	RCCGGY	1 cut(s)	173
Cfr13I	GGNCC	2 cut(s)	523, 769
Csp6I	GTAC	3 cut(s)	142, 636, 732
CspAI	ACCGGT	1 cut(s)	173
CviAII	CATG	4 cut(s)	213, 350, 445, 880
CviQI	GTAC	3 cut(s)	142, 636, 732
DdeI	CTNAG	7 cut(s)	51, 165, 238, 275, 455, 719, 821
DpnI	GATC	6 cut(s)	9, 198, 540, 816, 843, 864
DpnII	GATC	6 cut(s)	7, 196, 538, 814, 841, 862
DraI	TTTAAA	1 cut(s)	675
EaeI	YGGCCR	2 cut(s)	438, 870
Eco130I	CCWWGG	1 cut(s)	534
Eco24I	GRGCYC	1 cut(s)	239
Eco31I	GGTCTC	1 cut(s)	278
Eco47I	GGWCC	1 cut(s)	769
Eco57I	CTGAAG	1 cut(s)	116
EcoNI	CCTNNNNNAGG	1 cut(s)	806
EcoRII	CCWGG	1 cut(s)	807
EcoT14I	CCWWGG	1 cut(s)	534
EcoT38I	GRGCYC	1 cut(s)	239
ErhI	CCWWGG	1 cut(s)	534
FaeI	CATG	4 cut(s)	216, 353, 448, 883
FatI	CATG	4 cut(s)	212, 349, 444, 879
FauI	CCCGC	1 cut(s)	514
FbaI	TGATCA	1 cut(s)	7
Fnu4HI	GCNGC	1 cut(s)	81
FokI	GGATG	1 cut(s)	714
FriOI	GRGCYC	1 cut(s)	239
Fsp4HI	GCNGC	1 cut(s)	81
FspBI	CTAG	1 cut(s)	845
GluI	GCNGC	1 cut(s)	81
HaeIII	GGCC	3 cut(s)	440, 525, 872
HapII	CCGG	3 cut(s)	174, 264, 839
Hin1II	CATG	4 cut(s)	216, 353, 448, 883
HinfI	GANTC	5 cut(s)	37, 209, 491, 825, 883
HpaII	CCGG	3 cut(s)	174, 264, 839
HphI	GGTGA	2 cut(s)	206, 512
Hpy166II	GTNNAC	2 cut(s)	144, 154
Hpy188I	TCNGA	5 cut(s)	118, 304, 490, 651, 867
Hpy188III	TCNNGA	3 cut(s)	350, 839, 845
Hpy8I	GTNNAC	2 cut(s)	144, 154
HpyAV	CCTTC	1 cut(s)	171
HpyCH4III	ACNGT	1 cut(s)	158
HpyCH4V	TGCA	2 cut(s)	401, 616
HpyF10VI	GCNNNNNNNGC	3 cut(s)	518, 527, 907
HpyF3I	CTNAG	7 cut(s)	51, 165, 238, 275, 455, 719, 821
Hsp92II	CATG	4 cut(s)	216, 353, 448, 883
Kpn2I	TCCGGA	1 cut(s)	838
Ksp22I	TGATCA	1 cut(s)	7
Kzo9I	GATC	6 cut(s)	7, 196, 538, 814, 841, 862
LmnI	GCTCC	1 cut(s)	780
Lsp1109I	GCAGC	1 cut(s)	67
LweI	GCATC	1 cut(s)	100
MaeI	CTAG	1 cut(s)	845
MaeIII	GTNAC	4 cut(s)	34, 223, 476, 500
MalI	GATC	6 cut(s)	9, 198, 540, 816, 843, 864
MboI	GATC	6 cut(s)	7, 196, 538, 814, 841, 862
MboII	GAAGA	2 cut(s)	594, 824
MfeI	CAATTG	1 cut(s)	495
MflI	RGATCY	4 cut(s)	538, 814, 841, 862
MhlI	GDGCHC	2 cut(s)	130, 239
MlsI	TGGCCA	2 cut(s)	440, 872
MluCI	AATT	5 cut(s)	343, 421, 495, 574, 726
MluNI	TGGCCA	2 cut(s)	440, 872
MlyI	GAGTC	3 cut(s)	31, 218, 500
MmeI	TCCRAC	1 cut(s)	158
MnlI	CCTC	7 cut(s)	79, 99, 226, 250, 617, 788, 812
Mox20I	TGGCCA	2 cut(s)	440, 872
MroI	TCCGGA	1 cut(s)	838
MroXI	GAANNNNTTC	1 cut(s)	410
MscI	TGGCCA	2 cut(s)	440, 872
MseI	TTAA	3 cut(s)	320, 549, 674
Msp20I	TGGCCA	2 cut(s)	440, 872
MspA1I	CMGCKG	2 cut(s)	242, 699
MspI	CCGG	3 cut(s)	174, 264, 839
MspR9I	CCNGG	2 cut(s)	265, 809
MunI	CAATTG	1 cut(s)	495
MvaI	CCWGG	1 cut(s)	809
MwoI	GCNNNNNNNGC	3 cut(s)	518, 527, 907
NciI	CCSGG	1 cut(s)	265
NdeII	GATC	6 cut(s)	7, 196, 538, 814, 841, 862
NlaIII	CATG	4 cut(s)	216, 353, 448, 883
NlaIV	GGNNCC	1 cut(s)	103
NmuCI	GTSAC	2 cut(s)	34, 500
PagI	TCATGA	1 cut(s)	349
PdmI	GAANNNNTTC	1 cut(s)	410
PfeI	GAWTC	2 cut(s)	825, 883
PinAI	ACCGGT	1 cut(s)	173
PkrI	GCNGC	1 cut(s)	82
PleI	GAGTC	3 cut(s)	31, 217, 499
PpsI	GAGTC	3 cut(s)	31, 217, 499
Psp6I	CCWGG	1 cut(s)	807
PspGI	CCWGG	1 cut(s)	807
PspN4I	GGNNCC	1 cut(s)	103
PspPI	GGNCC	2 cut(s)	523, 769
PsuI	RGATCY	4 cut(s)	538, 814, 841, 862
PvuII	CAGCTG	1 cut(s)	242
RsaI	GTAC	3 cut(s)	143, 637, 733
RsaNI	GTAC	3 cut(s)	142, 636, 732
SaqAI	TTAA	3 cut(s)	320, 549, 674
SatI	GCNGC	1 cut(s)	81
Sau3AI	GATC	6 cut(s)	7, 196, 538, 814, 841, 862
Sau96I	GGNCC	2 cut(s)	523, 769
SchI	GAGTC	3 cut(s)	31, 218, 500
ScrFI	CCNGG	2 cut(s)	265, 809
SduI	GDGCHC	2 cut(s)	130, 239
SfaNI	GCATC	1 cut(s)	100
SinI	GGWCC	1 cut(s)	769
Sse9I	AATT	5 cut(s)	343, 421, 495, 574, 726
SsiI	CCGC	4 cut(s)	192, 374, 521, 699
SspMI	CTAG	1 cut(s)	845
StyD4I	CCNGG	2 cut(s)	263, 807
StyI	CCWWGG	1 cut(s)	534
TaaI	ACNGT	1 cut(s)	158
TaqI	TCGA	2 cut(s)	71, 124
TasI	AATT	5 cut(s)	343, 421, 495, 574, 726
TatI	WGTACW	1 cut(s)	141
TfiI	GAWTC	2 cut(s)	825, 883
Tru1I	TTAA	3 cut(s)	320, 549, 674
Tru9I	TTAA	3 cut(s)	320, 549, 674
TscAI	CASTG	5 cut(s)	55, 112, 283, 421, 568
TseFI	GTSAC	2 cut(s)	34, 500
TseI	GCWGC	1 cut(s)	80
Tsp45I	GTSAC	2 cut(s)	34, 500
TspDTI	ATGAA	2 cut(s)	338, 576
TspGWI	ACGGA	1 cut(s)	189
TspRI	CASTG	5 cut(s)	55, 112, 283, 421, 568
VpaK11BI	GGWCC	1 cut(s)	769
XagI	CCTNNNNNAGG	1 cut(s)	806
XapI	RAATTY	1 cut(s)	421
XbaI	TCTAGA	1 cut(s)	844
XmnI	GAANNNNTTC	1 cut(s)	410
XspI	CTAG	1 cut(s)	845

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.