Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0005786

Physical Location & Seq

Genomic Coordinates Forward (+)

94382615 .. 94384250

Gene Structure 1636 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00073600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGCAGATGATGGCCATTAAGAAAATCGACAATGATAACTTTCTTGAAGCTGTTTCAAATATGTCCCGCTTGAGGCATCCAAACATCGTTACACTGGTTGGATATTGTGCAGAACATGGACAGCGTCTTCTAGTCTATGAGTATATAGGAAATGGGAGCTTGCATGACATACTTCATTTTGCTGAAGATGGCAGCAACACACTGACATGGAATGCCCGTGTTAGGGTAGCACTTGGCACTGCTCGAGCTTTAGAGTACTTGCATGAGGTGTGCTTACCTTCAGTTGTACATAGAAACTTCAAGTCAGCAAATATTTTACTTGATGAAGAGCTCAATGCCCATCTATCCGACTGTGGCTTAGCTGCACTAACGCCAAACACAGAGCGACAGGTTTCAACTCAGATGGTAGGCTCATTTGGTTATAGTGCTCCTGAGTTTGCCTTGTCCGGAGTATACACTGTAAAAAGTGATGTCTACAGCTTTGGGGTGGTGATGCTAGAGCTGTTGACTGGTCGCAAGCCACTAGACAGTTCAAGGGCAAGGTCAGAACAATCACTTGTAAGATGGGCTACTCCCCAACTCCATGATATAGATGCTCTAGCAAAAATGGTTGATCCTTCCCTAAATGGCATGTATCCGGCGAAATCTCTTTCACGCTTTGCTGACATCATCGCCCTTTGTGTTCAGCCGGAACCTGAATTTCGGTCTCCCATGTCTGAAGTTGTGCAAGCGCTGGTCCGCTTAGTGCAAAGAGCTAGTATGGTCAAAAGACGTTCAAGTGATGAATCTGGTTTTGCATACAGGACCCCTGATCGTGAAGCAATTGACATGTCATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

279

Amino Acids

31.1

Weight (kDa)

6.07

Isoelectric Point (pI)

41.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	6 - 243	2.5e-36	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	9 - 245	1.3e-39	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005786)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G22130 AT4G22130
fragaria_vesca	FvH4_3g01460 FvH4_3g01460 FvH4_3g01460 FvH4_3g01460 FvH4_3g01460 FvH4_3g01460 FvH4_3g01460
malus_domestica	MD05G1351900.v1.1 MD10G1326000.v1.1
prunus_persica	Prupe.4G015700_v2.0.a1 Prupe.4G015700_v2.0.a1 Prupe.4G015700_v2.0.a1
pyrus_communis	pycom05g31890 pycom10g27590 pycom10g27600
rosa_chinensis	RchiOBHm_Chr5g0002301
rosa_laevigata	RLG00000031016
rosa_multiflora	Rmu_sc0001492.1_g000010
rosa_roxburghii	Rroxscaffold_1G00073570 Rroxscaffold_1G00073600
rosa_rugosa	Rorug04G0395200
rosa_samantha	Rh5AG017900 Rh5BG020500 Rh5CG019700 Rh5DG018600
rosa_wichuraiana	Rw5G001680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	453, 474
AccIII	TCCGGA	1 cut(s)	446
AciI	CCGC	2 cut(s)	67, 739
AclWI	GGATC	1 cut(s)	608
AcoI	YGGCCR	1 cut(s)	12
AcsI	RAATTY	1 cut(s)	698
AcuI	CTGAAG	3 cut(s)	204, 264, 738
AfaI	GTAC	2 cut(s)	257, 288
AfeI	AGCGCT	1 cut(s)	732
AfiI	CCNNNNNNNGG	3 cut(s)	72, 222, 223
AflIII	ACRYGT	1 cut(s)	828
AgsI	TTSAA	6 cut(s)	47, 57, 301, 396, 534, 777
AluBI	AGCT	8 cut(s)	50, 159, 248, 331, 362, 480, 502, 755
AluI	AGCT	8 cut(s)	50, 159, 248, 331, 362, 480, 502, 755
Alw21I	GWGCWC	2 cut(s)	333, 430
Alw26I	GTCTC	1 cut(s)	711
AlwI	GGATC	1 cut(s)	608
Ama87I	CYCGRG	1 cut(s)	243
Aor13HI	TCCGGA	1 cut(s)	446
Aor51HI	AGCGCT	1 cut(s)	732
AoxI	GGCC	1 cut(s)	12
ApeKI	GCWGC	2 cut(s)	192, 362
ApoI	RAATTY	1 cut(s)	698
AspLEI	GCGC	1 cut(s)	733
AspS9I	GGNCC	2 cut(s)	736, 804
AsuHPI	GGTGA	1 cut(s)	502
AvaI	CYCGRG	1 cut(s)	243
AvaII	GGWCC	2 cut(s)	736, 804
BalI	TGGCCA	1 cut(s)	14
BanII	GRGCYC	1 cut(s)	333
BbsI	GAAGAC	1 cut(s)	119
Bbv12I	GWGCWC	2 cut(s)	333, 430
BbvI	GCAGC	2 cut(s)	204, 349
BccI	CCATC	5 cut(s)	4, 182, 348, 397, 558
BciVI	GTATCC	1 cut(s)	645
BcoDI	GTCTC	1 cut(s)	711
BfaI	CTAG	5 cut(s)	131, 497, 524, 599, 756
BfmI	CTRYAG	1 cut(s)	475
BfoI	RGCGCY	1 cut(s)	734
BfuI	GTATCC	1 cut(s)	645
BisI	GCNGC	2 cut(s)	193, 363
BlpI	GCTNAGC	1 cut(s)	358
BlsI	GCNGC	2 cut(s)	194, 364
BmcAI	AGTACT	1 cut(s)	257
Bme18I	GGWCC	2 cut(s)	736, 804
BmeT110I	CYCGRG	1 cut(s)	243
BmgT120I	GGNCC	2 cut(s)	736, 804
BmiI	GGNNCC	2 cut(s)	693, 806
BmsI	GCATC	3 cut(s)	85, 483, 583
BpiI	GAAGAC	1 cut(s)	119
Bpu1102I	GCTNAGC	1 cut(s)	358
BpuEI	CTTGAG	1 cut(s)	91
BsaI	GGTCTC	1 cut(s)	711
BsaWI	WCCGGW	1 cut(s)	446
Bsc4I	CCNNNNNNNGG	3 cut(s)	72, 222, 223
Bse1I	ACTGG	2 cut(s)	99, 514
BseAI	TCCGGA	1 cut(s)	446
BseGI	GGATG	1 cut(s)	76
BseLI	CCNNNNNNNGG	3 cut(s)	72, 222, 223
BseMII	CTCAG	2 cut(s)	413, 423
BseNI	ACTGG	2 cut(s)	99, 514
BseXI	GCAGC	2 cut(s)	204, 349
BsgI	GTGCAG	2 cut(s)	129, 348
BshFI	GGCC	1 cut(s)	14
BsiHKAI	GWGCWC	2 cut(s)	333, 430
BsiHKCI	CYCGRG	1 cut(s)	243
BsiSI	CCGG	3 cut(s)	447, 638, 689
BslFI	GGGAC	1 cut(s)	49
BslI	CCNNNNNNNGG	3 cut(s)	72, 222, 223
BsmAI	GTCTC	1 cut(s)	711
BsmFI	GGGAC	1 cut(s)	49
BsmI	GAATGC	1 cut(s)	217
BsnI	GGCC	1 cut(s)	14
Bso31I	GGTCTC	1 cut(s)	711
BsoBI	CYCGRG	1 cut(s)	243
Bsp1286I	GDGCHC	2 cut(s)	333, 430
Bsp13I	TCCGGA	1 cut(s)	446
Bsp1407I	TGTACA	1 cut(s)	286
Bsp143I	GATC	2 cut(s)	613, 811
Bsp1720I	GCTNAGC	1 cut(s)	358
BspACI	CCGC	2 cut(s)	67, 739
BspANI	GGCC	1 cut(s)	14
BspCNI	CTCAG	2 cut(s)	412, 424
BspEI	TCCGGA	1 cut(s)	446
BspLI	GGNNCC	2 cut(s)	693, 806
BspPI	GGATC	1 cut(s)	608
BspQI	GCTCTTC	1 cut(s)	321
BspTNI	GGTCTC	1 cut(s)	711
BsrGI	TGTACA	1 cut(s)	286
BsrI	ACTGG	2 cut(s)	99, 514
BssMI	GATC	2 cut(s)	613, 811
BssNAI	GTATAC	1 cut(s)	454
Bst1107I	GTATAC	1 cut(s)	454
Bst4CI	ACNGT	3 cut(s)	353, 460, 530
Bst6I	CTCTTC	1 cut(s)	321
BstAUI	TGTACA	1 cut(s)	286
BstC8I	GCNNGC	3 cut(s)	161, 518, 729
BstDEI	CTNAG	4 cut(s)	358, 399, 432, 742
BstF5I	GGATG	1 cut(s)	76
BstH2I	RGCGCY	1 cut(s)	734
BstHHI	GCGC	1 cut(s)	733
BstKTI	GATC	2 cut(s)	616, 814
BstMAI	GTCTC	1 cut(s)	711
BstMBI	GATC	2 cut(s)	613, 811
BstNSI	RCATGY	2 cut(s)	634, 832
BstSFI	CTRYAG	1 cut(s)	475
BstV1I	GCAGC	2 cut(s)	204, 349
BstV2I	GAAGAC	1 cut(s)	119
BstZ17I	GTATAC	1 cut(s)	454
BsuI	GTATCC	1 cut(s)	645
BsuRI	GGCC	1 cut(s)	14
BtgZI	GCGATG	1 cut(s)	655
BtsCI	GGATG	1 cut(s)	76
BtsI	GCAGTG	1 cut(s)	237
BtsIMutI	CAGTG	4 cut(s)	92, 200, 237, 456
Cac8I	GCNNGC	3 cut(s)	161, 518, 729
CfoI	GCGC	1 cut(s)	733
Cfr13I	GGNCC	2 cut(s)	736, 804
CseI	GACGC	1 cut(s)	113
Csp6I	GTAC	2 cut(s)	256, 287
CviAII	CATG	8 cut(s)	116, 164, 207, 263, 584, 631, 712, 829
CviQI	GTAC	2 cut(s)	256, 287
DdeI	CTNAG	4 cut(s)	358, 399, 432, 742
DpnI	GATC	2 cut(s)	615, 813
DpnII	GATC	2 cut(s)	613, 811
EaeI	YGGCCR	1 cut(s)	12
Eam1104I	CTCTTC	1 cut(s)	321
EarI	CTCTTC	1 cut(s)	321
Ecl136II	GAGCTC	1 cut(s)	331
Eco24I	GRGCYC	1 cut(s)	333
Eco31I	GGTCTC	1 cut(s)	711
Eco47I	GGWCC	2 cut(s)	736, 804
Eco47III	AGCGCT	1 cut(s)	732
Eco53kI	GAGCTC	1 cut(s)	331
Eco57I	CTGAAG	3 cut(s)	204, 264, 738
Eco88I	CYCGRG	1 cut(s)	243
EcoICRI	GAGCTC	1 cut(s)	331
EcoO109I	RGGNCCY	1 cut(s)	804
EcoT38I	GRGCYC	1 cut(s)	333
FaeI	CATG	8 cut(s)	119, 167, 210, 266, 587, 634, 715, 832
FaqI	GGGAC	1 cut(s)	49
FatI	CATG	8 cut(s)	115, 163, 206, 262, 583, 630, 711, 828
FauI	CCCGC	1 cut(s)	74
FblI	GTMKAC	2 cut(s)	453, 474
Fnu4HI	GCNGC	2 cut(s)	193, 363
FokI	GGATG	1 cut(s)	63
FriOI	GRGCYC	1 cut(s)	333
Fsp4HI	GCNGC	2 cut(s)	193, 363
FspBI	CTAG	5 cut(s)	131, 497, 524, 599, 756
GlaI	GCGC	1 cut(s)	732
GluI	GCNGC	2 cut(s)	193, 363
HaeII	RGCGCY	1 cut(s)	734
HaeIII	GGCC	1 cut(s)	14
HapII	CCGG	3 cut(s)	447, 638, 689
HgaI	GACGC	1 cut(s)	113
HhaI	GCGC	1 cut(s)	733
Hin1II	CATG	8 cut(s)	119, 167, 210, 266, 587, 634, 715, 832
Hin6I	GCGC	1 cut(s)	731
HinP1I	GCGC	1 cut(s)	731
HincII	GTYRAC	1 cut(s)	507
HindII	GTYRAC	1 cut(s)	507
HinfI	GANTC	1 cut(s)	785
HpaII	CCGG	3 cut(s)	447, 638, 689
HphI	GGTGA	1 cut(s)	502
Hpy166II	GTNNAC	3 cut(s)	454, 475, 507
Hpy188I	TCNGA	4 cut(s)	349, 402, 547, 718
Hpy188III	TCNNGA	4 cut(s)	44, 431, 447, 815
Hpy8I	GTNNAC	3 cut(s)	454, 475, 507
HpyAV	CCTTC	2 cut(s)	288, 627
HpyCH4III	ACNGT	3 cut(s)	353, 460, 530
HpyCH4IV	ACGT	1 cut(s)	772
HpyCH4V	TGCA	8 cut(s)	4, 110, 163, 262, 365, 727, 748, 797
HpyF3I	CTNAG	4 cut(s)	358, 399, 432, 742
HpySE526I	ACGT	1 cut(s)	772
Hsp92II	CATG	8 cut(s)	119, 167, 210, 266, 587, 634, 715, 832
HspAI	GCGC	1 cut(s)	731
Kpn2I	TCCGGA	1 cut(s)	446
Kzo9I	GATC	2 cut(s)	613, 811
LguI	GCTCTTC	1 cut(s)	321
LmnI	GCTCC	2 cut(s)	156, 433
Lsp1109I	GCAGC	2 cut(s)	204, 349
LweI	GCATC	3 cut(s)	85, 483, 583
MaeI	CTAG	5 cut(s)	131, 497, 524, 599, 756
MaeII	ACGT	1 cut(s)	772
MaeIII	GTNAC	1 cut(s)	88
MalI	GATC	2 cut(s)	615, 813
MboI	GATC	2 cut(s)	613, 811
MboII	GAAGA	3 cut(s)	119, 197, 338
MfeI	CAATTG	1 cut(s)	822
MhlI	GDGCHC	2 cut(s)	333, 430
MlsI	TGGCCA	1 cut(s)	14
MluCI	AATT	2 cut(s)	698, 822
MluNI	TGGCCA	1 cut(s)	14
MmeI	TCCRAC	2 cut(s)	79, 372
MnlI	CCTC	2 cut(s)	66, 259
Mox20I	TGGCCA	1 cut(s)	14
MroI	TCCGGA	1 cut(s)	446
MscI	TGGCCA	1 cut(s)	14
MseI	TTAA	1 cut(s)	18
MslI	CAYNNNNRTG	1 cut(s)	205
Msp20I	TGGCCA	1 cut(s)	14
MspI	CCGG	3 cut(s)	447, 638, 689
MunI	CAATTG	1 cut(s)	822
Mva1269I	GAATGC	1 cut(s)	217
NdeII	GATC	2 cut(s)	613, 811
NlaIII	CATG	8 cut(s)	119, 167, 210, 266, 587, 634, 715, 832
NlaIV	GGNNCC	2 cut(s)	693, 806
NspI	RCATGY	2 cut(s)	634, 832
PaeR7I	CTCGAG	1 cut(s)	243
PciI	ACATGT	1 cut(s)	828
PciSI	GCTCTTC	1 cut(s)	321
PctI	GAATGC	1 cut(s)	217
PfeI	GAWTC	1 cut(s)	785
PflFI	GACNNNGTC	1 cut(s)	123
PkrI	GCNGC	2 cut(s)	194, 364
PpuMI	RGGWCCY	1 cut(s)	804
PscI	ACATGT	1 cut(s)	828
Psp124BI	GAGCTC	1 cut(s)	333
Psp5II	RGGWCCY	1 cut(s)	804
PspN4I	GGNNCC	2 cut(s)	693, 806
PspPI	GGNCC	2 cut(s)	736, 804
PspPPI	RGGWCCY	1 cut(s)	804
PspXI	VCTCGAGB	1 cut(s)	243
PsyI	GACNNNGTC	1 cut(s)	123
RsaI	GTAC	2 cut(s)	257, 288
RsaNI	GTAC	2 cut(s)	256, 287
RseI	CAYNNNNRTG	1 cut(s)	205
SacI	GAGCTC	1 cut(s)	333
SapI	GCTCTTC	1 cut(s)	321
SaqAI	TTAA	1 cut(s)	18
SatI	GCNGC	2 cut(s)	193, 363
Sau3AI	GATC	2 cut(s)	613, 811
Sau96I	GGNCC	2 cut(s)	736, 804
ScaI	AGTACT	1 cut(s)	257
SduI	GDGCHC	2 cut(s)	333, 430
SfaNI	GCATC	3 cut(s)	85, 483, 583
SfcI	CTRYAG	1 cut(s)	475
Sfr274I	CTCGAG	1 cut(s)	243
SinI	GGWCC	2 cut(s)	736, 804
SlaI	CTCGAG	1 cut(s)	243
SmiMI	CAYNNNNRTG	1 cut(s)	205
SmlI	CTYRAG	2 cut(s)	70, 243
SmoI	CTYRAG	2 cut(s)	70, 243
Sse9I	AATT	2 cut(s)	698, 822
SsiI	CCGC	2 cut(s)	67, 739
SspI	AATATT	1 cut(s)	313
SspMI	CTAG	5 cut(s)	131, 497, 524, 599, 756
SstI	GAGCTC	1 cut(s)	333
TaaI	ACNGT	3 cut(s)	353, 460, 530
TaiI	ACGT	1 cut(s)	775
TaqI	TCGA	2 cut(s)	27, 244
TaqII	GACCGA	1 cut(s)	693
TasI	AATT	2 cut(s)	698, 822
TatI	WGTACW	2 cut(s)	255, 286
TfiI	GAWTC	1 cut(s)	785
Tru1I	TTAA	1 cut(s)	18
Tru9I	TTAA	1 cut(s)	18
TscAI	CASTG	4 cut(s)	99, 207, 244, 463
TseI	GCWGC	2 cut(s)	192, 362
TspDTI	ATGAA	3 cut(s)	164, 339, 798
TspRI	CASTG	4 cut(s)	99, 207, 244, 463
Tth111I	GACNNNGTC	1 cut(s)	123
VpaK11BI	GGWCC	2 cut(s)	736, 804
XapI	RAATTY	1 cut(s)	698
XceI	RCATGY	2 cut(s)	634, 832
XhoI	CTCGAG	1 cut(s)	243
XmiI	GTMKAC	2 cut(s)	453, 474
XspI	CTAG	5 cut(s)	131, 497, 524, 599, 756
ZrmI	AGTACT	1 cut(s)	257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.