Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0005786

Physical Location & Seq

Genomic Coordinates Forward (+)

28506771 .. 28509085

Gene Structure 2315 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g27600.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGCCTCCACCCGCAGAAATTTTGGTGGTTGATAGGTTACATGGTAAAAATCGATCGATAAAAAGGATAAAATCACCTATCACTGCTACTCCTTATACTGTTGCCTCTCTCCAATCAGCAACTAATAGCTTCAGTCAAGAATTTCTTATTGGTGAAGGTTCTCTTGGTCGTGTTTACAGAGCAGAGTTCCCTAATGGAAAGATAATGGCAATTAAGAAAATTGACAATGCAGCACTATCATTGCAAGAGGAAGATAATTTCCTTGAAGCTATTTCAAATATGTCGCGCTTGAGGCATCCAAACATTGTTACACTGGCTGGATATTGCGCAGAGCATGGACAGCGTCTTCTAGTCTATGAGCATGTAGGAAACGGGAGCTTGCATGACATTCTTCATTTTGCTGAAGACGGCAGTAAGAATCTGAATTGGAATGCCCGTGTTAGGGTAGCACTAGGCACAGCTCGAGCTTTAGAGTACTTGCATGAAGTTTGCTTACCTTCTGTTGTACATAGAAACTTCAAGTCAGCAAATATTTTACTTGACGAAGAGCTCAATCCCCACTTATCTGACTGTGGGTTAGCTGCTCTAACGCCAAACACAGAGCGACAGGTTTCAACTCAGATGGTGGGTTCATTTGGTTATAGTGCTCCTGAATTCGCCTTGTCAGGAGTATACACTGTAAAAAGTGACGTCTACAGCTTTGGGGTGGTGATGCTCGAGCTGTTGACGGGTCGGAAGCCACTAGACTGTTCAAGGTCGAGGTCAGAACAGTCGCTTGTGAGATGGGCTACTCCCCAACTACATGATATAGATGCCCTAGCAAAAATGGTTGACCCGGCCTTAAATGGCATGTATCCTGCGAAGTCTCTTTCGCGTTTCGCTGACATCATTGCGCTTTGTGTTCAGCCGGAGCCTGAATTTCGGCCTCCCATGTCCGAAGTTGTGCAAGCACTGGTCCGCTTAGTGCAAAGAGCAAGCGTGGTCAGACGTTCAAGTGACGAATCTGGTTTCGCATACAGGACCCCCGATCACGAAGCAATTGACATGTCAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

352

Amino Acids

38.81

Weight (kDa)

6.42

Isoelectric Point (pI)

44.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005786)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G22130 AT4G22130
fragaria_vesca	FvH4_3g01460 FvH4_3g01460 FvH4_3g01460 FvH4_3g01460 FvH4_3g01460 FvH4_3g01460 FvH4_3g01460
malus_domestica	MD05G1351900.v1.1 MD10G1326000.v1.1
prunus_persica	Prupe.4G015700_v2.0.a1 Prupe.4G015700_v2.0.a1 Prupe.4G015700_v2.0.a1
pyrus_communis	pycom05g31890 pycom10g27590 pycom10g27600
rosa_chinensis	RchiOBHm_Chr5g0002301
rosa_laevigata	RLG00000031016
rosa_multiflora	Rmu_sc0001492.1_g000010
rosa_roxburghii	Rroxscaffold_1G00073570 Rroxscaffold_1G00073600
rosa_rugosa	Rorug04G0395200
rosa_samantha	Rh5AG017900 Rh5BG020500 Rh5CG019700 Rh5DG018600
rosa_wichuraiana	Rw5G001680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	693
Acc16I	TGCGCA	1 cut(s)	328
AccI	GTMKAC	2 cut(s)	672, 693
AccII	CGCG	2 cut(s)	286, 874
AciI	CCGC	2 cut(s)	12, 958
AcsI	RAATTY	4 cut(s)	18, 140, 653, 917
AcuI	CTGAAG	2 cut(s)	115, 423
AcyI	GRCGYC	1 cut(s)	690
AfaI	GTAC	2 cut(s)	476, 507
AfiI	CCNNNNNNNGG	2 cut(s)	441, 442
AflIII	ACRYGT	1 cut(s)	1044
AgsI	TTSAA	6 cut(s)	266, 276, 520, 615, 753, 993
AjuI	GAANNNNNNNTTGG	4 cut(s)	132, 147, 164, 179
AluBI	AGCT	9 cut(s)	129, 269, 378, 461, 467, 550, 581, 699, 721
AluI	AGCT	9 cut(s)	129, 269, 378, 461, 467, 550, 581, 699, 721
Alw21I	GWGCWC	2 cut(s)	552, 649
Alw26I	GTCTC	1 cut(s)	870
Ama87I	CYCGRG	2 cut(s)	462, 716
AoxI	GGCC	2 cut(s)	837, 923
ApeKI	GCWGC	2 cut(s)	230, 581
ApoI	RAATTY	4 cut(s)	18, 140, 653, 917
AspLEI	GCGC	3 cut(s)	288, 329, 895
AspS9I	GGNCC	2 cut(s)	955, 1020
AsuC2I	CCSGG	1 cut(s)	836
AsuHPI	GGTGA	3 cut(s)	66, 164, 721
AvaI	CYCGRG	2 cut(s)	462, 716
AvaII	GGWCC	2 cut(s)	955, 1020
BanII	GRGCYC	1 cut(s)	552
BarI	GAAGNNNNNNTAC	2 cut(s)	477, 509
BbsI	GAAGAC	2 cut(s)	338, 411
Bbv12I	GWGCWC	2 cut(s)	552, 649
BbvI	GCAGC	2 cut(s)	242, 568
BccI	CCATC	2 cut(s)	616, 777
BceAI	ACGGC	1 cut(s)	424
BciVI	GTATCC	1 cut(s)	864
BcnI	CCSGG	1 cut(s)	836
BcoDI	GTCTC	1 cut(s)	870
BfaI	CTAG	4 cut(s)	350, 452, 743, 818
BfmI	CTRYAG	1 cut(s)	694
BfuI	GTATCC	1 cut(s)	864
BisI	GCNGC	2 cut(s)	231, 582
BlsI	GCNGC	2 cut(s)	232, 583
BmcAI	AGTACT	1 cut(s)	476
Bme1390I	CCNGG	1 cut(s)	836
Bme18I	GGWCC	2 cut(s)	955, 1020
BmeT110I	CYCGRG	2 cut(s)	462, 716
BmgT120I	GGNCC	2 cut(s)	955, 1020
BmiI	GGNNCC	2 cut(s)	912, 1022
BmrFI	CCNGG	1 cut(s)	836
BmsI	GCATC	3 cut(s)	304, 702, 802
BpiI	GAAGAC	2 cut(s)	338, 411
BpuEI	CTTGAG	1 cut(s)	310
BpuMI	CCSGG	1 cut(s)	836
Bsa29I	ATCGAT	2 cut(s)	52, 56
BsaHI	GRCGYC	1 cut(s)	690
BsaXI	ACNNNNNCTCC	2 cut(s)	73, 103
Bsc4I	CCNNNNNNNGG	2 cut(s)	441, 442
Bse1I	ACTGG	2 cut(s)	318, 957
Bse3DI	GCAATG	2 cut(s)	239, 888
BseCI	ATCGAT	2 cut(s)	52, 56
BseGI	GGATG	1 cut(s)	295
BseLI	CCNNNNNNNGG	2 cut(s)	441, 442
BseMI	GCAATG	2 cut(s)	239, 888
BseMII	CTCAG	1 cut(s)	632
BseNI	ACTGG	2 cut(s)	318, 957
BseXI	GCAGC	2 cut(s)	242, 568
Bsh1236I	CGCG	2 cut(s)	286, 874
Bsh1285I	CGRYCG	1 cut(s)	56
BshFI	GGCC	2 cut(s)	839, 925
BshVI	ATCGAT	2 cut(s)	52, 56
BsiEI	CGRYCG	1 cut(s)	56
BsiHKAI	GWGCWC	2 cut(s)	552, 649
BsiHKCI	CYCGRG	2 cut(s)	462, 716
BsiSI	CCGG	2 cut(s)	836, 908
BslI	CCNNNNNNNGG	2 cut(s)	441, 442
BsmAI	GTCTC	1 cut(s)	870
BsmI	GAATGC	1 cut(s)	436
BsnI	GGCC	2 cut(s)	839, 925
BsoBI	CYCGRG	2 cut(s)	462, 716
Bsp1286I	GDGCHC	2 cut(s)	552, 649
Bsp1407I	TGTACA	1 cut(s)	505
Bsp143I	GATC	2 cut(s)	53, 1027
BspACI	CCGC	2 cut(s)	12, 958
BspANI	GGCC	2 cut(s)	839, 925
BspCNI	CTCAG	1 cut(s)	631
BspDI	ATCGAT	2 cut(s)	52, 56
BspFNI	CGCG	2 cut(s)	286, 874
BspLI	GGNNCC	2 cut(s)	912, 1022
BspQI	GCTCTTC	1 cut(s)	540
BsrDI	GCAATG	2 cut(s)	239, 888
BsrGI	TGTACA	1 cut(s)	505
BsrI	ACTGG	2 cut(s)	318, 957
BssMI	GATC	2 cut(s)	53, 1027
BssNAI	GTATAC	1 cut(s)	673
BssNI	GRCGYC	1 cut(s)	690
Bst1107I	GTATAC	1 cut(s)	673
Bst4CI	ACNGT	5 cut(s)	100, 572, 679, 749, 771
Bst6I	CTCTTC	1 cut(s)	540
BstACI	GRCGYC	1 cut(s)	690
BstAUI	TGTACA	1 cut(s)	505
BstC8I	GCNNGC	3 cut(s)	380, 948, 976
BstDEI	CTNAG	2 cut(s)	618, 961
BstF5I	GGATG	1 cut(s)	295
BstFNI	CGCG	2 cut(s)	286, 874
BstHHI	GCGC	3 cut(s)	288, 329, 895
BstKTI	GATC	2 cut(s)	56, 1030
BstMAI	GTCTC	1 cut(s)	870
BstMBI	GATC	2 cut(s)	53, 1027
BstMCI	CGRYCG	1 cut(s)	56
BstMWI	GCNNNNNNNGC	2 cut(s)	292, 340
BstNSI	RCATGY	3 cut(s)	365, 853, 1048
BstSCI	CCNGG	1 cut(s)	834
BstSFI	CTRYAG	1 cut(s)	694
BstUI	CGCG	2 cut(s)	286, 874
BstV1I	GCAGC	2 cut(s)	242, 568
BstV2I	GAAGAC	2 cut(s)	338, 411
BstZ17I	GTATAC	1 cut(s)	673
Bsu15I	ATCGAT	2 cut(s)	52, 56
BsuI	GTATCC	1 cut(s)	864
BsuRI	GGCC	2 cut(s)	839, 925
BsuTUI	ATCGAT	2 cut(s)	52, 56
BtsCI	GGATG	1 cut(s)	295
BtsI	GCAGTG	1 cut(s)	81
BtsIMutI	CAGTG	4 cut(s)	81, 311, 675, 950
Cac8I	GCNNGC	3 cut(s)	380, 948, 976
CfoI	GCGC	3 cut(s)	288, 329, 895
Cfr13I	GGNCC	2 cut(s)	955, 1020
ClaI	ATCGAT	2 cut(s)	52, 56
CseI	GACGC	1 cut(s)	332
Csp6I	GTAC	2 cut(s)	475, 506
CviAII	CATG	9 cut(s)	41, 335, 362, 383, 482, 803, 850, 931, 1045
CviQI	GTAC	2 cut(s)	475, 506
DdeI	CTNAG	2 cut(s)	618, 961
DpnI	GATC	2 cut(s)	55, 1029
DpnII	GATC	2 cut(s)	53, 1027
Eam1104I	CTCTTC	1 cut(s)	540
EarI	CTCTTC	1 cut(s)	540
Ecl136II	GAGCTC	1 cut(s)	550
Eco24I	GRGCYC	1 cut(s)	552
Eco47I	GGWCC	2 cut(s)	955, 1020
Eco53kI	GAGCTC	1 cut(s)	550
Eco57I	CTGAAG	2 cut(s)	115, 423
Eco88I	CYCGRG	2 cut(s)	462, 716
EcoICRI	GAGCTC	1 cut(s)	550
EcoO109I	RGGNCCY	1 cut(s)	1020
EcoRI	GAATTC	1 cut(s)	653
EcoT38I	GRGCYC	1 cut(s)	552
FaeI	CATG	9 cut(s)	44, 338, 365, 386, 485, 806, 853, 934, 1048
FalI	AAGNNNNNCTT	4 cut(s)	129, 161, 147, 179
FatI	CATG	9 cut(s)	40, 334, 361, 382, 481, 802, 849, 930, 1044
FauI	CCCGC	1 cut(s)	19
FblI	GTMKAC	2 cut(s)	672, 693
Fnu4HI	GCNGC	2 cut(s)	231, 582
FokI	GGATG	1 cut(s)	282
FriOI	GRGCYC	1 cut(s)	552
Fsp4HI	GCNGC	2 cut(s)	231, 582
FspBI	CTAG	4 cut(s)	350, 452, 743, 818
FspI	TGCGCA	1 cut(s)	328
GlaI	GCGC	3 cut(s)	287, 328, 894
GluI	GCNGC	2 cut(s)	231, 582
HaeIII	GGCC	2 cut(s)	839, 925
HapII	CCGG	2 cut(s)	836, 908
HgaI	GACGC	1 cut(s)	332
HhaI	GCGC	3 cut(s)	288, 329, 895
Hin1I	GRCGYC	1 cut(s)	690
Hin1II	CATG	9 cut(s)	44, 338, 365, 386, 485, 806, 853, 934, 1048
Hin6I	GCGC	3 cut(s)	286, 327, 893
HinP1I	GCGC	3 cut(s)	286, 327, 893
HincII	GTYRAC	2 cut(s)	726, 832
HindII	GTYRAC	2 cut(s)	726, 832
HinfI	GANTC	2 cut(s)	418, 1001
HpaII	CCGG	2 cut(s)	836, 908
HphI	GGTGA	3 cut(s)	66, 164, 721
Hpy166II	GTNNAC	5 cut(s)	175, 673, 694, 726, 832
Hpy188I	TCNGA	7 cut(s)	423, 568, 621, 735, 766, 937, 986
Hpy188III	TCNNGA	4 cut(s)	137, 650, 666, 1031
Hpy8I	GTNNAC	5 cut(s)	175, 673, 694, 726, 832
HpyAV	CCTTC	2 cut(s)	149, 507
HpyCH4III	ACNGT	5 cut(s)	100, 572, 679, 749, 771
HpyCH4IV	ACGT	2 cut(s)	690, 988
HpyCH4V	TGCA	6 cut(s)	230, 244, 382, 481, 946, 967
HpyF10VI	GCNNNNNNNGC	2 cut(s)	292, 340
HpyF3I	CTNAG	2 cut(s)	618, 961
HpySE526I	ACGT	2 cut(s)	690, 988
Hsp92I	GRCGYC	1 cut(s)	690
Hsp92II	CATG	9 cut(s)	44, 338, 365, 386, 485, 806, 853, 934, 1048
HspAI	GCGC	3 cut(s)	286, 327, 893
Kzo9I	GATC	2 cut(s)	53, 1027
LguI	GCTCTTC	1 cut(s)	540
LmnI	GCTCC	3 cut(s)	375, 652, 910
Lsp1109I	GCAGC	2 cut(s)	242, 568
LweI	GCATC	3 cut(s)	304, 702, 802
MaeI	CTAG	4 cut(s)	350, 452, 743, 818
MaeII	ACGT	2 cut(s)	690, 988
MaeIII	GTNAC	4 cut(s)	36, 307, 686, 995
MalI	GATC	2 cut(s)	55, 1029
MboI	GATC	2 cut(s)	53, 1027
MboII	GAAGA	5 cut(s)	263, 338, 383, 416, 557
MfeI	CAATTG	1 cut(s)	1038
MhlI	GDGCHC	2 cut(s)	552, 649
MmeI	TCCRAC	1 cut(s)	713
MnlI	CCTC	6 cut(s)	15, 115, 241, 285, 753, 936
MseI	TTAA	3 cut(s)	213, 842, 1054
MspI	CCGG	2 cut(s)	836, 908
MspR9I	CCNGG	1 cut(s)	836
MunI	CAATTG	1 cut(s)	1038
Mva1269I	GAATGC	1 cut(s)	436
MvnI	CGCG	2 cut(s)	286, 874
MwoI	GCNNNNNNNGC	2 cut(s)	292, 340
NciI	CCSGG	1 cut(s)	836
NdeII	GATC	2 cut(s)	53, 1027
NlaIII	CATG	9 cut(s)	44, 338, 365, 386, 485, 806, 853, 934, 1048
NlaIV	GGNNCC	2 cut(s)	912, 1022
NmuCI	GTSAC	2 cut(s)	686, 995
NsbI	TGCGCA	1 cut(s)	328
NspI	RCATGY	3 cut(s)	365, 853, 1048
PaeR7I	CTCGAG	2 cut(s)	462, 716
PciI	ACATGT	1 cut(s)	1044
PciSI	GCTCTTC	1 cut(s)	540
PctI	GAATGC	1 cut(s)	436
PfeI	GAWTC	2 cut(s)	418, 1001
PflFI	GACNNNGTC	1 cut(s)	342
PkrI	GCNGC	2 cut(s)	232, 583
Ple19I	CGATCG	1 cut(s)	56
PpuMI	RGGWCCY	1 cut(s)	1020
PscI	ACATGT	1 cut(s)	1044
Psp124BI	GAGCTC	1 cut(s)	552
Psp5II	RGGWCCY	1 cut(s)	1020
PspN4I	GGNNCC	2 cut(s)	912, 1022
PspPI	GGNCC	2 cut(s)	955, 1020
PspPPI	RGGWCCY	1 cut(s)	1020
PspXI	VCTCGAGB	2 cut(s)	462, 716
PsyI	GACNNNGTC	1 cut(s)	342
PvuI	CGATCG	1 cut(s)	56
RsaI	GTAC	2 cut(s)	476, 507
RsaNI	GTAC	2 cut(s)	475, 506
SacI	GAGCTC	1 cut(s)	552
SapI	GCTCTTC	1 cut(s)	540
SaqAI	TTAA	3 cut(s)	213, 842, 1054
SatI	GCNGC	2 cut(s)	231, 582
Sau3AI	GATC	2 cut(s)	53, 1027
Sau96I	GGNCC	2 cut(s)	955, 1020
ScaI	AGTACT	1 cut(s)	476
ScrFI	CCNGG	1 cut(s)	836
SduI	GDGCHC	2 cut(s)	552, 649
SfaNI	GCATC	3 cut(s)	304, 702, 802
SfcI	CTRYAG	1 cut(s)	694
Sfr274I	CTCGAG	2 cut(s)	462, 716
SinI	GGWCC	2 cut(s)	955, 1020
SlaI	CTCGAG	2 cut(s)	462, 716
SmlI	CTYRAG	3 cut(s)	289, 462, 716
SmoI	CTYRAG	3 cut(s)	289, 462, 716
SsiI	CCGC	2 cut(s)	12, 958
SspI	AATATT	1 cut(s)	532
SspMI	CTAG	4 cut(s)	350, 452, 743, 818
SstI	GAGCTC	1 cut(s)	552
StyD4I	CCNGG	1 cut(s)	834
TaaI	ACNGT	5 cut(s)	100, 572, 679, 749, 771
TaiI	ACGT	2 cut(s)	693, 991
TaqI	TCGA	5 cut(s)	52, 56, 463, 717, 758
TatI	WGTACW	2 cut(s)	474, 505
TfiI	GAWTC	2 cut(s)	418, 1001
Tru1I	TTAA	3 cut(s)	213, 842, 1054
Tru9I	TTAA	3 cut(s)	213, 842, 1054
TscAI	CASTG	4 cut(s)	88, 318, 682, 957
TseFI	GTSAC	2 cut(s)	686, 995
TseI	GCWGC	2 cut(s)	230, 581
Tsp45I	GTSAC	2 cut(s)	686, 995
TspDTI	ATGAA	3 cut(s)	383, 498, 621
TspRI	CASTG	4 cut(s)	88, 318, 682, 957
Tth111I	GACNNNGTC	1 cut(s)	342
VpaK11BI	GGWCC	2 cut(s)	955, 1020
XapI	RAATTY	4 cut(s)	18, 140, 653, 917
XceI	RCATGY	3 cut(s)	365, 853, 1048
XhoI	CTCGAG	2 cut(s)	462, 716
XmiI	GTMKAC	2 cut(s)	672, 693
XspI	CTAG	4 cut(s)	350, 452, 743, 818
ZraI	GACGTC	1 cut(s)	691
ZrmI	AGTACT	1 cut(s)	476

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.