Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0005786

Physical Location & Seq

Genomic Coordinates Reverse (-)

56146295 .. 56146690

Gene Structure 396 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0395200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGAAAGATTTATTTTTTTGGGTTCGTATCCGGAATATGCCGCCGGCATATGAGCAGAGGAAAACCATTGCGAATGTTGCTTTTGTTGCAGGGAAATTTCTTGATCTGGATCAGAAGGTTTTCGATGCAACTGGAGAGATTAGGGTTAGGGTTTCTCATGCAATTTCGAAACCTTTCGTCATGCAAAAAACCCTAAAGTTTTCCAAAGGAGTTAAGCAAGAGGTCCACTTCTTCTTTGAAAACCTAGTGGGAAAATGCAAGACATGCCATTGGGTCTATCATGATGGGGAGGCCTGTAATGTAGAACCTGCAGCACCGGCGGTCACAGCTGCTCCACCACTGGCAGCTAGGGCTGTCAATGGGTCGTGTCGGGTCAAGGTATATGTCGTGTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

131

Amino Acids

14.72

Weight (kDa)

9.54

Isoelectric Point (pI)

30.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCHC_4	PF14392	55 - 100	9.4e-06	Zinc knuckle

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005786)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G22130 AT4G22130
fragaria_vesca	FvH4_3g01460 FvH4_3g01460 FvH4_3g01460 FvH4_3g01460 FvH4_3g01460 FvH4_3g01460 FvH4_3g01460
malus_domestica	MD05G1351900.v1.1 MD10G1326000.v1.1
prunus_persica	Prupe.4G015700_v2.0.a1 Prupe.4G015700_v2.0.a1 Prupe.4G015700_v2.0.a1
pyrus_communis	pycom05g31890 pycom10g27590 pycom10g27600
rosa_chinensis	RchiOBHm_Chr5g0002301
rosa_laevigata	RLG00000031016
rosa_multiflora	Rmu_sc0001492.1_g000010
rosa_roxburghii	Rroxscaffold_1G00073570 Rroxscaffold_1G00073600
rosa_rugosa	Rorug04G0395200
rosa_samantha	Rh5AG017900 Rh5BG020500 Rh5CG019700 Rh5DG018600
rosa_wichuraiana	Rw5G001680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	316
AccIII	TCCGGA	1 cut(s)	30
AciI	CCGC	2 cut(s)	41, 320
AclWI	GGATC	1 cut(s)	117
AcsI	RAATTY	1 cut(s)	95
AgsI	TTSAA	1 cut(s)	239
AluBI	AGCT	2 cut(s)	329, 347
AluI	AGCT	2 cut(s)	329, 347
AlwI	GGATC	1 cut(s)	117
Aor13HI	TCCGGA	1 cut(s)	30
AoxI	GGCC	1 cut(s)	291
ApeKI	GCWGC	3 cut(s)	311, 329, 344
ApoI	RAATTY	1 cut(s)	95
Asp700I	GAANNNNTTC	2 cut(s)	119, 173
AspS9I	GGNCC	1 cut(s)	223
AsuII	TTCGAA	1 cut(s)	167
AvaII	GGWCC	1 cut(s)	223
BbvI	GCAGC	3 cut(s)	316, 323, 356
BccI	CCATC	1 cut(s)	278
BciVI	GTATCC	1 cut(s)	38
BfaI	CTAG	2 cut(s)	245, 348
BfmI	CTRYAG	1 cut(s)	309
BfuAI	ACCTGC	1 cut(s)	316
BfuI	GTATCC	1 cut(s)	38
BisI	GCNGC	4 cut(s)	41, 312, 330, 345
BlsI	GCNGC	4 cut(s)	42, 313, 331, 346
Bme18I	GGWCC	1 cut(s)	223
BmgT120I	GGNCC	1 cut(s)	223
BmsI	GCATC	1 cut(s)	115
BpmI	CTGGAG	1 cut(s)	153
Bpu14I	TTCGAA	1 cut(s)	167
BsaBI	GATNNNNATC	1 cut(s)	108
BsaWI	WCCGGW	1 cut(s)	30
BsaXI	ACNNNNNCTCC	2 cut(s)	316, 346
Bse118I	RCCGGY	2 cut(s)	43, 316
Bse1I	ACTGG	2 cut(s)	136, 345
Bse3DI	GCAATG	1 cut(s)	66
Bse8I	GATNNNNATC	1 cut(s)	108
BseAI	TCCGGA	1 cut(s)	30
BseJI	GATNNNNATC	1 cut(s)	108
BseMI	GCAATG	1 cut(s)	66
BseNI	ACTGG	2 cut(s)	136, 345
BseXI	GCAGC	3 cut(s)	316, 323, 356
BshFI	GGCC	1 cut(s)	293
BsiSI	CCGG	3 cut(s)	31, 44, 317
BsnI	GGCC	1 cut(s)	293
Bsp119I	TTCGAA	1 cut(s)	167
Bsp13I	TCCGGA	1 cut(s)	30
Bsp143I	GATC	2 cut(s)	103, 109
BspACI	CCGC	2 cut(s)	41, 320
BspANI	GGCC	1 cut(s)	293
BspEI	TCCGGA	1 cut(s)	30
BspHI	TCATGA	1 cut(s)	280
BspMAI	CTGCAG	1 cut(s)	313
BspMI	ACCTGC	1 cut(s)	316
BspPI	GGATC	1 cut(s)	117
BspT104I	TTCGAA	1 cut(s)	167
BsrDI	GCAATG	1 cut(s)	66
BsrFI	RCCGGY	2 cut(s)	43, 316
BsrI	ACTGG	2 cut(s)	136, 345
BssAI	RCCGGY	2 cut(s)	43, 316
BssMI	GATC	2 cut(s)	103, 109
BstAPI	GCANNNNNTGC	1 cut(s)	264
BstBI	TTCGAA	1 cut(s)	167
BstC8I	GCNNGC	1 cut(s)	45
BstKTI	GATC	2 cut(s)	106, 112
BstMBI	GATC	2 cut(s)	103, 109
BstMWI	GCNNNNNNNGC	6 cut(s)	77, 86, 264, 317, 326, 350
BstNSI	RCATGY	1 cut(s)	267
BstSFI	CTRYAG	1 cut(s)	309
BstV1I	GCAGC	3 cut(s)	316, 323, 356
BsuI	GTATCC	1 cut(s)	38
BsuRI	GGCC	1 cut(s)	293
BtsIMutI	CAGTG	1 cut(s)	338
BveI	ACCTGC	1 cut(s)	316
Cac8I	GCNNGC	1 cut(s)	45
CciI	TCATGA	1 cut(s)	280
Cfr10I	RCCGGY	2 cut(s)	43, 316
Cfr13I	GGNCC	1 cut(s)	223
CviAII	CATG	4 cut(s)	158, 181, 264, 281
CviJI	RGCY	4 cut(s)	293, 329, 347, 353
CviKI_1	RGCY	4 cut(s)	293, 329, 347, 353
DpnI	GATC	2 cut(s)	105, 111
DpnII	GATC	2 cut(s)	103, 109
Eco147I	AGGCCT	1 cut(s)	293
Eco47I	GGWCC	1 cut(s)	223
FaeI	CATG	4 cut(s)	161, 184, 267, 284
FatI	CATG	4 cut(s)	157, 180, 263, 280
FauNDI	CATATG	1 cut(s)	49
Fnu4HI	GCNGC	4 cut(s)	41, 312, 330, 345
Fsp4HI	GCNGC	4 cut(s)	41, 312, 330, 345
FspBI	CTAG	2 cut(s)	245, 348
GluI	GCNGC	4 cut(s)	41, 312, 330, 345
GsuI	CTGGAG	1 cut(s)	153
HaeIII	GGCC	1 cut(s)	293
HapII	CCGG	3 cut(s)	31, 44, 317
Hin1II	CATG	4 cut(s)	161, 184, 267, 284
HpaII	CCGG	3 cut(s)	31, 44, 317
Hpy166II	GTNNAC	1 cut(s)	226
Hpy188I	TCNGA	1 cut(s)	114
Hpy188III	TCNNGA	4 cut(s)	31, 101, 107, 281
Hpy8I	GTNNAC	1 cut(s)	226
HpyAV	CCTTC	1 cut(s)	109
HpyCH4V	TGCA	6 cut(s)	89, 128, 161, 184, 258, 311
HpyF10VI	GCNNNNNNNGC	6 cut(s)	77, 86, 264, 317, 326, 350
Hsp92II	CATG	4 cut(s)	161, 184, 267, 284
Kpn2I	TCCGGA	1 cut(s)	30
KroI	GCCGGC	1 cut(s)	43
KroNI	GCCGGC	1 cut(s)	45
Kzo9I	GATC	2 cut(s)	103, 109
LmnI	GCTCC	1 cut(s)	337
LpnPI	CCDG	9 cut(s)	44, 57, 75, 92, 117, 307, 321, 326, 330
Lsp1109I	GCAGC	3 cut(s)	316, 323, 356
LweI	GCATC	1 cut(s)	115
MaeI	CTAG	2 cut(s)	245, 348
MaeIII	GTNAC	1 cut(s)	322
MalI	GATC	2 cut(s)	105, 111
MboI	GATC	2 cut(s)	103, 109
MboII	GAAGA	1 cut(s)	223
MluCI	AATT	2 cut(s)	95, 162
MnlI	CCTC	3 cut(s)	51, 214, 283
MroI	TCCGGA	1 cut(s)	30
MroNI	GCCGGC	1 cut(s)	43
MroXI	GAANNNNTTC	2 cut(s)	119, 173
MseI	TTAA	1 cut(s)	213
MspA1I	CMGCKG	1 cut(s)	329
MspI	CCGG	3 cut(s)	31, 44, 317
MwoI	GCNNNNNNNGC	6 cut(s)	77, 86, 264, 317, 326, 350
NaeI	GCCGGC	1 cut(s)	45
NdeI	CATATG	1 cut(s)	49
NdeII	GATC	2 cut(s)	103, 109
NgoMIV	GCCGGC	1 cut(s)	43
NlaIII	CATG	4 cut(s)	161, 184, 267, 284
NmuCI	GTSAC	1 cut(s)	322
NspI	RCATGY	1 cut(s)	267
NspV	TTCGAA	1 cut(s)	167
PagI	TCATGA	1 cut(s)	280
PceI	AGGCCT	1 cut(s)	293
PdiI	GCCGGC	1 cut(s)	45
PdmI	GAANNNNTTC	2 cut(s)	119, 173
PkrI	GCNGC	4 cut(s)	42, 313, 331, 346
PspPI	GGNCC	1 cut(s)	223
PstI	CTGCAG	1 cut(s)	313
PvuII	CAGCTG	1 cut(s)	329
SaqAI	TTAA	1 cut(s)	213
SatI	GCNGC	4 cut(s)	41, 312, 330, 345
Sau3AI	GATC	2 cut(s)	103, 109
Sau96I	GGNCC	1 cut(s)	223
SetI	ASST	8 cut(s)	120, 175, 225, 246, 310, 331, 349, 381
SfaNI	GCATC	1 cut(s)	115
SfcI	CTRYAG	1 cut(s)	309
SfuI	TTCGAA	1 cut(s)	167
SgrAI	CRCCGGYG	1 cut(s)	316
SinI	GGWCC	1 cut(s)	223
Sse9I	AATT	2 cut(s)	95, 162
SseBI	AGGCCT	1 cut(s)	293
SsiI	CCGC	2 cut(s)	41, 320
SspMI	CTAG	2 cut(s)	245, 348
StuI	AGGCCT	1 cut(s)	293
TaqI	TCGA	2 cut(s)	123, 167
TasI	AATT	2 cut(s)	95, 162
TauI	GCSGC	1 cut(s)	43
Tru1I	TTAA	1 cut(s)	213
Tru9I	TTAA	1 cut(s)	213
TscAI	CASTG	1 cut(s)	345
TseFI	GTSAC	1 cut(s)	322
TseI	GCWGC	3 cut(s)	311, 329, 344
Tsp45I	GTSAC	1 cut(s)	322
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	345
VpaK11BI	GGWCC	1 cut(s)	223
XapI	RAATTY	1 cut(s)	95
XceI	RCATGY	1 cut(s)	267
XmnI	GAANNNNTTC	2 cut(s)	119, 173
XspI	CTAG	2 cut(s)	245, 348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.