pycom10g28670

Potassium channel

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0014681
Physical Location & Seq
Forward (+)
29176803 .. 29178073
1271 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1110 bp
ATGTCGTTTTCAATTCCGTACTGGCTACTGATTTTAGTGACGATGTTAAAGAAGCCTTACTTTCTGAAAAGAAAGATCGATCATTCTCAACTCAATAATGAAACTAATGTCGTCCACAGAAGAAGAAATCGCCTTTATAGCATTAGCACTACCCCATGTCCATCATTCAAGAACCGCCTACAACAAAATGAAGCGGAATCTCAATGTCCTGTAGATTCTGATCCGCTCTATGTAAAACCACAATTCAGTCTAACGCAAGTACTTTTGTTGTTGATTGCGTACATTGGTGGAGGCACATTTTGCTTTTTCCTGATGAGGCATCAGATAAAGGGTAAGAAAACGAATGCGATTCTGGATTCCATGTACTTGTGTATAGTCACAATGAGCACTGTTGGTTACGGGGACCTTGTGCCAAATAGCATGTTGGCAAAGCTAGTTGCATGCGTTTATGTGTTCATCGGCATGGCCCTTGTTGGCATAATTCTTGGCAAGGCAGCAGATTACCTTGTAGAGAAGCAGGAAATCCTTTTGGTTAGAGCTATACATTTTCGCGAAAAATTTGGGCCACAGGAGCTTCTTAAGGAGGTTGAGACCGAAAAAGTCAAGTTCAAATGTATTACTGTCGGAATCCTTCTTTTGATTCTTATTATAGTAGGTACCGTCTTCTTATGTCTAGTTGAGAATCTGGAAGTTACGGATGCTCTCTATTGCGTTTGTTCCACTATAACTACACTAGGCTATGGGGACGAGAGTTTCTCAACGGGAGCTGGTCGTATTTTCGCTGTTTTTTGGATACTGAGCAGCACCATTTGTTTAGCACAGTTCTTTCTCTACCTTGCTGAACTATACACTGAAAGAAGGCAAAGATCACTTGTGAAGTGGGTTCTTACGAGGAGATTAACACCCTCAGATCTTGAGGAAGCAGATCTTGATCATGATAAAGTCGTTAGTGCGGCAGAGTTTATCGTATATAAGCTAAAGGAGATGGGGAAGATCAACCAGGAAGATATTGCACTGGTGATGGAAACGTTCAACAAACTTGACATCGATCATTCAGGAACTTTGACGGCATCTGATTTAATATCAATACCATCCCAACCAACAACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000325 GO:0003674 GO:0005215 GO:0005216 GO:0005242 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006873 GO:0006875 GO:0008150 GO:0008324 GO:0009705 GO:0009987 GO:0010029 GO:0010119 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015276 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0016043 GO:0019725 GO:0022607 GO:0022803 GO:0022832 GO:0022834 GO:0022836 GO:0022838 GO:0022839 GO:0022840 GO:0022841 GO:0022842 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0030004 GO:0030007 GO:0030322 GO:0031004 GO:0031090 GO:0031224 GO:0031226 GO:0032991 GO:0034220 GO:0042391 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046873 GO:0048580 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050801 GO:0051179 GO:0051234 GO:0051239 GO:0051259 GO:0051260 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0055082 GO:0055085 GO:0065003 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071840 GO:0071944 GO:0090533 GO:0098533 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098796 GO:0098805 GO:0099094 GO:1900140 GO:1902494 GO:1902495 GO:1904949 GO:1990351 GO:2000026
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ion_trans_2

Protein Analysis

370

Amino Acids

41.74

Weight (kDa)

7.51

Isoelectric Point (pI)

31.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ion_trans_2 PF07885 90 - 170 1.3e-16 Ion channel
Ion_trans PF00520 109 - 168 8e-07 Ion transport protein
Ion_trans_2 PF07885 210 - 284 1.2e-13 Ion channel
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014681)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g00500 FvH4_3g00500
malus_domestica MD00G1057000.v1.1 MD10G1337300.v1.1
prunus_persica Prupe.4G005900_v2.0.a1 Prupe.4G005900_v2.0.a1 Prupe.4G005900_v2.0.a1
pyrus_communis pycom10g28670
rosa_chinensis RchiOBHm_Chr5g0000671
rosa_laevigata RLG00000030886
rosa_multiflora Rmu_sc0011992.1_g000010
rosa_rugosa Rorug04G0385500
rosa_samantha Rh5AG005600 Rh5BG007200 Rh5CG006000 Rh5DG006000
rosa_wichuraiana Rw5G000570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 656
AccB1I GGYRCC 1 cut(s) 656
AccBSI CCGCTC 1 cut(s) 226
AccII CGCG 1 cut(s) 552
AciI CCGC 4 cut(s) 175, 194, 224, 953
AclI AACGTT 1 cut(s) 1028
AclWI GGATC 1 cut(s) 215
AcsI RAATTY 1 cut(s) 557
AfaI GTAC 5 cut(s) 20, 261, 281, 365, 658
AflII CTTAAG 1 cut(s) 578
AgsI TTSAA 4 cut(s) 12, 169, 610, 1033
AjnI CCWGG 1 cut(s) 999
AluBI AGCT 5 cut(s) 433, 539, 574, 767, 976
AluI AGCT 5 cut(s) 433, 539, 574, 767, 976
Alw21I GWGCWC 1 cut(s) 389
Alw26I GTCTC 1 cut(s) 584
AlwI GGATC 1 cut(s) 215
AoxI GGCC 2 cut(s) 465, 563
ApeKI GCWGC 2 cut(s) 494, 801
ApoI RAATTY 1 cut(s) 557
Asp718I GGTACC 1 cut(s) 656
AspS9I GGNCC 3 cut(s) 403, 466, 563
AsuHPI GGTGA 1 cut(s) 1030
AvaII GGWCC 1 cut(s) 403
BanI GGYRCC 1 cut(s) 656
BbsI GAAGAC 1 cut(s) 655
Bbv12I GWGCWC 1 cut(s) 389
BbvI GCAGC 2 cut(s) 506, 813
BccI CCATC 4 cut(s) 169, 979, 1015, 1099
BceAI ACGGC 1 cut(s) 1083
BciT130I CCWGG 1 cut(s) 1001
BciVI GTATCC 1 cut(s) 786
BclI TGATCA 1 cut(s) 931
BcoDI GTCTC 1 cut(s) 584
BfaI CTAG 3 cut(s) 434, 674, 734
BfmI CTRYAG 1 cut(s) 210
BfrI CTTAAG 1 cut(s) 578
BfuI GTATCC 1 cut(s) 786
BglII AGATCT 2 cut(s) 910, 925
BisI GCNGC 3 cut(s) 495, 802, 954
BlsI GCNGC 3 cut(s) 496, 803, 955
BmcAI AGTACT 1 cut(s) 261
Bme1390I CCNGG 1 cut(s) 1001
Bme18I GGWCC 1 cut(s) 403
BmgT120I GGNCC 3 cut(s) 403, 466, 563
BmiI GGNNCC 2 cut(s) 404, 658
BmrFI CCNGG 1 cut(s) 1001
BmsI GCATC 3 cut(s) 328, 688, 1079
BpiI GAAGAC 1 cut(s) 655
BplI GAGNNNNNCTC 2 cut(s) 740, 772
BpuEI CTTGAG 1 cut(s) 935
Bsa29I ATCGAT 2 cut(s) 78, 1047
BsaBI GATNNNNATC 2 cut(s) 219, 930
BsaI GGTCTC 1 cut(s) 584
Bse1I ACTGG 2 cut(s) 26, 1020
Bse8I GATNNNNATC 2 cut(s) 219, 930
BseBI CCWGG 1 cut(s) 1001
BseCI ATCGAT 2 cut(s) 78, 1047
BseGI GGATG 2 cut(s) 703, 1091
BseJI GATNNNNATC 2 cut(s) 219, 930
BseMII CTCAG 2 cut(s) 788, 921
BseNI ACTGG 2 cut(s) 26, 1020
BseRI GAGGAG 1 cut(s) 907
BseXI GCAGC 2 cut(s) 506, 813
Bsh1236I CGCG 1 cut(s) 552
BshFI GGCC 2 cut(s) 467, 565
BshNI GGYRCC 1 cut(s) 656
BshVI ATCGAT 2 cut(s) 78, 1047
BsiHKAI GWGCWC 1 cut(s) 389
BslFI GGGAC 2 cut(s) 416, 758
BsmAI GTCTC 1 cut(s) 584
BsmFI GGGAC 2 cut(s) 416, 758
BsmI GAATGC 1 cut(s) 349
BsnI GGCC 2 cut(s) 467, 565
Bso31I GGTCTC 1 cut(s) 584
Bsp1286I GDGCHC 1 cut(s) 389
Bsp143I GATC 9 cut(s) 75, 79, 220, 866, 910, 925, 931, 993, 1048
Bsp68I TCGCGA 1 cut(s) 552
BspACI CCGC 4 cut(s) 175, 194, 224, 953
BspANI GGCC 2 cut(s) 467, 565
BspCNI CTCAG 2 cut(s) 789, 920
BspDI ATCGAT 2 cut(s) 78, 1047
BspFNI CGCG 1 cut(s) 552
BspHI TCATGA 1 cut(s) 934
BspLI GGNNCC 2 cut(s) 404, 658
BspPI GGATC 1 cut(s) 215
BspT107I GGYRCC 1 cut(s) 656
BspTI CTTAAG 1 cut(s) 578
BspTNI GGTCTC 1 cut(s) 584
BsrBI CCGCTC 1 cut(s) 226
BsrI ACTGG 2 cut(s) 26, 1020
BssMI GATC 9 cut(s) 75, 79, 220, 866, 910, 925, 931, 993, 1048
Bst2UI CCWGG 1 cut(s) 1001
Bst4CI ACNGT 4 cut(s) 391, 622, 661, 822
BstAFI CTTAAG 1 cut(s) 578
BstAPI GCANNNNNTGC 1 cut(s) 300
BstC8I GCNNGC 1 cut(s) 442
BstDEI CTNAG 2 cut(s) 797, 907
BstF5I GGATG 2 cut(s) 703, 1091
BstFNI CGCG 1 cut(s) 552
BstKTI GATC 9 cut(s) 78, 82, 223, 869, 913, 928, 934, 996, 1051
BstMAI GTCTC 1 cut(s) 584
BstMBI GATC 9 cut(s) 75, 79, 220, 866, 910, 925, 931, 993, 1048
BstMWI GCNNNNNNNGC 3 cut(s) 138, 300, 571
BstNI CCWGG 1 cut(s) 1001
BstNSI RCATGY 2 cut(s) 424, 444
BstSCI CCNGG 1 cut(s) 999
BstSFI CTRYAG 1 cut(s) 210
BstUI CGCG 1 cut(s) 552
BstV1I GCAGC 2 cut(s) 506, 813
BstV2I GAAGAC 1 cut(s) 655
BstX2I RGATCY 2 cut(s) 910, 925
BstYI RGATCY 2 cut(s) 910, 925
Bsu15I ATCGAT 2 cut(s) 78, 1047
BsuI GTATCC 1 cut(s) 786
BsuRI GGCC 2 cut(s) 467, 565
BsuTUI ATCGAT 2 cut(s) 78, 1047
BtsCI GGATG 2 cut(s) 703, 1091
BtsIMutI CAGTG 3 cut(s) 387, 849, 1013
BtuMI TCGCGA 1 cut(s) 552
Cac8I GCNNGC 1 cut(s) 442
CciI TCATGA 1 cut(s) 934
Cfr13I GGNCC 3 cut(s) 403, 466, 563
ClaI ATCGAT 2 cut(s) 78, 1047
Csp6I GTAC 5 cut(s) 19, 260, 280, 364, 657
CviAII CATG 6 cut(s) 156, 361, 421, 441, 463, 935
CviQI GTAC 5 cut(s) 19, 260, 280, 364, 657
DdeI CTNAG 2 cut(s) 797, 907
DpnI GATC 9 cut(s) 77, 81, 222, 868, 912, 927, 933, 995, 1050
DpnII GATC 9 cut(s) 75, 79, 220, 866, 910, 925, 931, 993, 1048
Eco31I GGTCTC 1 cut(s) 584
Eco47I GGWCC 1 cut(s) 403
EcoO109I RGGNCCY 1 cut(s) 403
EcoRII CCWGG 1 cut(s) 999
FaeI CATG 6 cut(s) 159, 364, 424, 444, 466, 938
FalI AAGNNNNNCTT 4 cut(s) 44, 76, 912, 944
FaqI GGGAC 2 cut(s) 416, 758
FatI CATG 6 cut(s) 155, 360, 420, 440, 462, 934
FbaI TGATCA 1 cut(s) 931
Fnu4HI GCNGC 3 cut(s) 495, 802, 954
FokI GGATG 2 cut(s) 710, 1078
Fsp4HI GCNGC 3 cut(s) 495, 802, 954
FspBI CTAG 3 cut(s) 434, 674, 734
GluI GCNGC 3 cut(s) 495, 802, 954
HaeIII GGCC 2 cut(s) 467, 565
Hin1II CATG 6 cut(s) 159, 364, 424, 444, 466, 938
HinfI GANTC 7 cut(s) 197, 215, 349, 356, 627, 640, 682
HphI GGTGA 1 cut(s) 1030
Hpy166II GTNNAC 1 cut(s) 115
Hpy188I TCNGA 6 cut(s) 66, 220, 324, 626, 910, 1075
Hpy188III TCNNGA 9 cut(s) 169, 310, 353, 551, 686, 914, 929, 935, 1056
Hpy8I GTNNAC 1 cut(s) 115
HpyAV CCTTC 2 cut(s) 641, 852
HpyCH4III ACNGT 4 cut(s) 391, 622, 661, 822
HpyCH4IV ACGT 1 cut(s) 1028
HpyCH4V TGCA 2 cut(s) 440, 1013
HpyF10VI GCNNNNNNNGC 3 cut(s) 138, 300, 571
HpyF3I CTNAG 2 cut(s) 797, 907
HpySE526I ACGT 1 cut(s) 1028
Hsp92II CATG 6 cut(s) 159, 364, 424, 444, 466, 938
KpnI GGTACC 1 cut(s) 660
Ksp22I TGATCA 1 cut(s) 931
Kzo9I GATC 9 cut(s) 75, 79, 220, 866, 910, 925, 931, 993, 1048
LmnI GCTCC 2 cut(s) 571, 764
Lsp1109I GCAGC 2 cut(s) 506, 813
LweI GCATC 3 cut(s) 328, 688, 1079
MaeI CTAG 3 cut(s) 434, 674, 734
MaeII ACGT 1 cut(s) 1028
MaeIII GTNAC 4 cut(s) 37, 376, 395, 691
MalI GATC 9 cut(s) 77, 81, 222, 868, 912, 927, 933, 995, 1050
MbiI CCGCTC 1 cut(s) 226
MboI GATC 9 cut(s) 75, 79, 220, 866, 910, 925, 931, 993, 1048
MboII GAAGA 5 cut(s) 132, 135, 655, 1003, 1016
MflI RGATCY 2 cut(s) 910, 925
MhlI GDGCHC 1 cut(s) 389
MluCI AATT 4 cut(s) 12, 242, 480, 557
MmeI TCCRAC 1 cut(s) 604
MnlI CCTC 6 cut(s) 284, 309, 577, 885, 910, 916
MseI TTAA 5 cut(s) 47, 579, 899, 1079, 1108
MslI CAYNNNNRTG 1 cut(s) 461
MspCI CTTAAG 1 cut(s) 578
MspR9I CCNGG 1 cut(s) 1001
Mva1269I GAATGC 1 cut(s) 349
MvaI CCWGG 1 cut(s) 1001
MvnI CGCG 1 cut(s) 552
MwoI GCNNNNNNNGC 3 cut(s) 138, 300, 571
NdeII GATC 9 cut(s) 75, 79, 220, 866, 910, 925, 931, 993, 1048
NlaIII CATG 6 cut(s) 159, 364, 424, 444, 466, 938
NlaIV GGNNCC 2 cut(s) 404, 658
NmuCI GTSAC 2 cut(s) 37, 376
NruI TCGCGA 1 cut(s) 552
NspI RCATGY 2 cut(s) 424, 444
PaeI GCATGC 1 cut(s) 444
PagI TCATGA 1 cut(s) 934
PctI GAATGC 1 cut(s) 349
PfeI GAWTC 7 cut(s) 197, 215, 349, 356, 627, 640, 682
PkrI GCNGC 3 cut(s) 496, 803, 955
PpuMI RGGWCCY 1 cut(s) 403
Psp1406I AACGTT 1 cut(s) 1028
Psp5II RGGWCCY 1 cut(s) 403
Psp6I CCWGG 1 cut(s) 999
PspGI CCWGG 1 cut(s) 999
PspN4I GGNNCC 2 cut(s) 404, 658
PspPI GGNCC 3 cut(s) 403, 466, 563
PspPPI RGGWCCY 1 cut(s) 403
PsuI RGATCY 2 cut(s) 910, 925
RruI TCGCGA 1 cut(s) 552
RsaI GTAC 5 cut(s) 20, 261, 281, 365, 658
RsaNI GTAC 5 cut(s) 19, 260, 280, 364, 657
RseI CAYNNNNRTG 1 cut(s) 461
SaqAI TTAA 5 cut(s) 47, 579, 899, 1079, 1108
SatI GCNGC 3 cut(s) 495, 802, 954
Sau3AI GATC 9 cut(s) 75, 79, 220, 866, 910, 925, 931, 993, 1048
Sau96I GGNCC 3 cut(s) 403, 466, 563
ScaI AGTACT 1 cut(s) 261
ScrFI CCNGG 1 cut(s) 1001
SduI GDGCHC 1 cut(s) 389
SfaNI GCATC 3 cut(s) 328, 688, 1079
SfcI CTRYAG 1 cut(s) 210
SinI GGWCC 1 cut(s) 403
SmiMI CAYNNNNRTG 1 cut(s) 461
SmlI CTYRAG 2 cut(s) 578, 914
SmoI CTYRAG 2 cut(s) 578, 914
SphI GCATGC 1 cut(s) 444
Sse9I AATT 4 cut(s) 12, 242, 480, 557
SsiI CCGC 4 cut(s) 175, 194, 224, 953
SspMI CTAG 3 cut(s) 434, 674, 734
StyD4I CCNGG 1 cut(s) 999
TaaI ACNGT 4 cut(s) 391, 622, 661, 822
TaiI ACGT 1 cut(s) 1031
TaqI TCGA 2 cut(s) 78, 1047
TaqII GACCGA 1 cut(s) 608
TasI AATT 4 cut(s) 12, 242, 480, 557
TatI WGTACW 2 cut(s) 259, 363
TauI GCSGC 1 cut(s) 956
TfiI GAWTC 7 cut(s) 197, 215, 349, 356, 627, 640, 682
Tru1I TTAA 5 cut(s) 47, 579, 899, 1079, 1108
Tru9I TTAA 5 cut(s) 47, 579, 899, 1079, 1108
TscAI CASTG 3 cut(s) 394, 856, 1020
TseFI GTSAC 2 cut(s) 37, 376
TseI GCWGC 2 cut(s) 494, 801
Tsp45I GTSAC 2 cut(s) 37, 376
TspDTI ATGAA 3 cut(s) 114, 204, 445
TspGWI ACGGA 2 cut(s) 6, 710
TspRI CASTG 3 cut(s) 394, 856, 1020
Vha464I CTTAAG 1 cut(s) 578
VpaK11BI GGWCC 1 cut(s) 403
XapI RAATTY 1 cut(s) 557
XceI RCATGY 2 cut(s) 424, 444
XspI CTAG 3 cut(s) 434, 674, 734
ZrmI AGTACT 1 cut(s) 261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.