pycom111g00750

Protein of unknown function (DUF3339)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
SuperScaffold_111
OG0018714
Physical Location & Seq
Forward (+)
531085 .. 531297
213 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 213 bp
ATGAGTGCTGATTGGGGGCCAGTCGTTGTTGCAGTTGTTTTGTTCATCCTCCTGTCGCCTGGGCTGCTATTCCAACTACCGGCAAGACATAGGGTGATGGAGTTCGGAAACATGGCCACAAGCGGGATTGCTATTCTTGTTCATGCCGTCATATACTTCTGCATAATCACCATCTTGATCATTGCAATTGGTATTCACATACATTTCAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3339

Protein Analysis

71

Amino Acids

7.66

Weight (kDa)

6.89

Isoelectric Point (pI)

45.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3339 PF11820 3 - 68 3e-33 Protein of unknown function (DUF3339)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0018714)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G27027 AT5G40980
malus_domestica MD09G1009300.v1.1 MD17G1001100.v1.1
prunus_persica Prupe.3G307600_v2.0.a1
pyrus_communis pycom111g00750
rosa_multiflora Rmu_sc0000998.1_g000004
rosa_samantha Rh2DG692000
rosa_wichuraiana Rw2G054680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 123
AcoI YGGCCR 1 cut(s) 114
AfiI CCNNNNNNNGG 2 cut(s) 79, 123
AgsI TTSAA 1 cut(s) 208
AjnI CCWGG 1 cut(s) 58
AoxI GGCC 2 cut(s) 17, 114
ApeKI GCWGC 1 cut(s) 64
AspS9I GGNCC 1 cut(s) 17
AsuHPI GGTGA 2 cut(s) 106, 160
BalI TGGCCA 1 cut(s) 116
BbvI GCAGC 1 cut(s) 51
BccI CCATC 2 cut(s) 91, 179
BceAI ACGGC 1 cut(s) 131
BciT130I CCWGG 1 cut(s) 60
BclI TGATCA 1 cut(s) 177
BisI GCNGC 1 cut(s) 65
BlsI GCNGC 1 cut(s) 66
Bme1390I CCNGG 1 cut(s) 60
BmgT120I GGNCC 1 cut(s) 17
BmiI GGNNCC 1 cut(s) 18
BmrFI CCNGG 1 cut(s) 60
BsaJI CCNNGG 1 cut(s) 59
Bsc4I CCNNNNNNNGG 2 cut(s) 79, 123
Bse118I RCCGGY 1 cut(s) 79
Bse1I ACTGG 1 cut(s) 20
Bse3DI GCAATG 1 cut(s) 180
BseBI CCWGG 1 cut(s) 60
BseDI CCNNGG 1 cut(s) 59
BseGI GGATG 1 cut(s) 45
BseLI CCNNNNNNNGG 2 cut(s) 79, 123
BseMI GCAATG 1 cut(s) 180
BseNI ACTGG 1 cut(s) 20
BseXI GCAGC 1 cut(s) 51
BshFI GGCC 2 cut(s) 19, 116
BsiSI CCGG 1 cut(s) 80
BslI CCNNNNNNNGG 2 cut(s) 79, 123
BsnI GGCC 2 cut(s) 19, 116
Bsp143I GATC 1 cut(s) 177
BspACI CCGC 1 cut(s) 123
BspANI GGCC 2 cut(s) 19, 116
BspLI GGNNCC 1 cut(s) 18
BsrDI GCAATG 1 cut(s) 180
BsrFI RCCGGY 1 cut(s) 79
BsrI ACTGG 1 cut(s) 20
BssAI RCCGGY 1 cut(s) 79
BssECI CCNNGG 1 cut(s) 59
BssMI GATC 1 cut(s) 177
Bst2UI CCWGG 1 cut(s) 60
BstF5I GGATG 1 cut(s) 45
BstKTI GATC 1 cut(s) 180
BstMBI GATC 1 cut(s) 177
BstMWI GCNNNNNNNGC 1 cut(s) 64
BstNI CCWGG 1 cut(s) 60
BstSCI CCNGG 1 cut(s) 58
BstV1I GCAGC 1 cut(s) 51
BsuRI GGCC 2 cut(s) 19, 116
BtsCI GGATG 1 cut(s) 45
Cfr10I RCCGGY 1 cut(s) 79
Cfr13I GGNCC 1 cut(s) 17
CviAII CATG 2 cut(s) 112, 143
CviJI RGCY 3 cut(s) 19, 64, 116
CviKI_1 RGCY 3 cut(s) 19, 64, 116
DpnI GATC 1 cut(s) 179
DpnII GATC 1 cut(s) 177
EaeI YGGCCR 1 cut(s) 114
EcoRII CCWGG 1 cut(s) 58
FaeI CATG 2 cut(s) 115, 146
FaiI YATR 7 cut(s) 90, 113, 144, 152, 154, 164, 200
FatI CATG 2 cut(s) 111, 142
FauI CCCGC 1 cut(s) 116
FbaI TGATCA 1 cut(s) 177
Fnu4HI GCNGC 1 cut(s) 65
FokI GGATG 1 cut(s) 32
Fsp4HI GCNGC 1 cut(s) 65
GluI GCNGC 1 cut(s) 65
HaeIII GGCC 2 cut(s) 19, 116
HapII CCGG 1 cut(s) 80
Hin1II CATG 2 cut(s) 115, 146
HpaII CCGG 1 cut(s) 80
HphI GGTGA 2 cut(s) 106, 160
Hpy188I TCNGA 1 cut(s) 107
Hpy188III TCNNGA 1 cut(s) 175
HpyCH4V TGCA 3 cut(s) 32, 162, 185
HpyF10VI GCNNNNNNNGC 1 cut(s) 64
Hsp92II CATG 2 cut(s) 115, 146
Ksp22I TGATCA 1 cut(s) 177
Kzo9I GATC 1 cut(s) 177
LpnPI CCDG 5 cut(s) 33, 45, 65, 72, 93
Lsp1109I GCAGC 1 cut(s) 51
MalI GATC 1 cut(s) 179
MboI GATC 1 cut(s) 177
MfeI CAATTG 1 cut(s) 186
MlsI TGGCCA 1 cut(s) 116
MluCI AATT 1 cut(s) 186
MluNI TGGCCA 1 cut(s) 116
MmeI TCCRAC 1 cut(s) 97
MnlI CCTC 1 cut(s) 59
Mox20I TGGCCA 1 cut(s) 116
MscI TGGCCA 1 cut(s) 116
Msp20I TGGCCA 1 cut(s) 116
MspI CCGG 1 cut(s) 80
MspR9I CCNGG 1 cut(s) 60
MunI CAATTG 1 cut(s) 186
MvaI CCWGG 1 cut(s) 60
MwoI GCNNNNNNNGC 1 cut(s) 64
NdeII GATC 1 cut(s) 177
NlaIII CATG 2 cut(s) 115, 146
NlaIV GGNNCC 1 cut(s) 18
PkrI GCNGC 1 cut(s) 66
Psp6I CCWGG 1 cut(s) 58
PspGI CCWGG 1 cut(s) 58
PspN4I GGNNCC 1 cut(s) 18
PspPI GGNCC 1 cut(s) 17
SatI GCNGC 1 cut(s) 65
Sau3AI GATC 1 cut(s) 177
Sau96I GGNCC 1 cut(s) 17
ScrFI CCNGG 1 cut(s) 60
Sse9I AATT 1 cut(s) 186
SsiI CCGC 1 cut(s) 123
StyD4I CCNGG 1 cut(s) 58
TasI AATT 1 cut(s) 186
TseI GCWGC 1 cut(s) 64
TspDTI ATGAA 2 cut(s) 34, 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.