pycom111g00900

yrdC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
SuperScaffold_111
OG0015282
Physical Location & Seq
Reverse (-)
592082 .. 594116
2035 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 927 bp
ATGGCCGCGTACTGTTACGGTTGCCAGACGAAAGTGTATAACGGCGGCCACCTAGCTTCCTCCTCCAGCTTCCCGCGGTCTTCGGCGGCGCCTGCAACTTTCGGCCGCGTATACTTCGACGCTCCGAAACCCCGCCGTTTCCCAGTCTTAGCTCTCTCCGTTAAGCGCAGCCCCAAGCGCCTCAAATACGCCGCTCCTCGCTTCACCAAGGAGGATGAAATGCTTTACGTTGAAGTTGATCCGTCGCAATCGGGAGCTGACAGCTGGAAATTGGAACCAGTTGTTGATCTTCTGAAACAAGGAGCTGTTGGTGTTGTTCCTACTGATACTGTGTATGCATTAGTCTGTGATTTGAGAAACAACTCGGCAATTGAACGTCTTCGCCGAATCAAGAACATCGACCCTCTAAAGCCCCTTGGCATCTTATGCCACTCCTTCCACGACATTGATACGTATACGACAGGGTTTCCCCGCGGTGATGGCCAAGGTCACGCAAATTTGTTCCGATATGTTAAGCAATGCATACCCGGCCCTTATACTTTCATCTTAACTGCAACCAAACAACTACCTAAAAATTGTATAAGGTATGGGATGGCAGATGCCAAATACAAATTAAGGAAAGATGTGGGTGTTCGTATGCCTGATGATCCCATATGTCAAGCGATTCTGGAGAAGATGGGCTCACCATTGATATCCACAAGTGTCAAGTGCCCAAAAGAGAATGAGTGGTTGATAGATCCAGTCATTATAGCTGATACATATGGACCAGAGGGCCTTGATTTTATCGTTGATGGCGGGGTAAGAGTGGCTGAACCATCAACTGTAGTTGACATGAAGGTGATCCCTCCCAAAATCATTCGACAAGGAAAGGGACCTAAATTACACTGGATGGTGACAGAAGATGACAATGAATCTGCTCAGTCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sua5_yciO_yrdC

Protein Analysis

309

Amino Acids

34.14

Weight (kDa)

8.88

Isoelectric Point (pI)

45.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sua5_yciO_yrdC PF01300 97 - 289 1.5e-42 Telomere recombination
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015282)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G01920 AT3G01920
fragaria_vesca FvH4_6g53521
malus_domestica MD09G1010800.v1.1
prunus_persica Prupe.3G306300_v2.0.a1
pyrus_communis pycom111g00900
rosa_chinensis RchiOBHm_Chr2g0175561
rosa_laevigata RLG00000022339
rosa_multiflora Rmu_sc0013970.1_g000004
rosa_roxburghii Rroxscaffold_2G00077220
rosa_rugosa Rorug02G0586500
rosa_samantha Rh2AG665400 Rh2BG676200 Rh2CG639400 Rh2DG690200
rosa_wichuraiana Rw2G054550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 88
AccBSI CCGCTC 1 cut(s) 194
AccI GTMKAC 2 cut(s) 111, 455
AccII CGCG 4 cut(s) 8, 76, 108, 474
AclWI GGATC 4 cut(s) 233, 641, 731, 835
AcoI YGGCCR 4 cut(s) 3, 46, 103, 481
AcsI RAATTY 1 cut(s) 496
AcyI GRCGYC 1 cut(s) 89
AfaI GTAC 1 cut(s) 11
AgsI TTSAA 2 cut(s) 233, 374
AluBI AGCT 7 cut(s) 56, 69, 152, 257, 264, 305, 752
AluI AGCT 7 cut(s) 56, 69, 152, 257, 264, 305, 752
AlwI GGATC 4 cut(s) 233, 641, 731, 835
AoxI GGCC 6 cut(s) 3, 46, 103, 481, 529, 772
ApeKI GCWGC 1 cut(s) 168
ApoI RAATTY 1 cut(s) 496
Asp700I GAANNNNTTC 1 cut(s) 378
AspLEI GCGC 3 cut(s) 91, 168, 180
AspS9I GGNCC 4 cut(s) 530, 764, 772, 872
AsuC2I CCSGG 1 cut(s) 528
AsuHPI GGTGA 5 cut(s) 196, 488, 675, 850, 904
AvaII GGWCC 2 cut(s) 764, 872
BaeGI GKGCMC 1 cut(s) 713
BalI TGGCCA 1 cut(s) 483
BanI GGYRCC 1 cut(s) 88
BanII GRGCYC 1 cut(s) 683
BbsI GAAGAC 2 cut(s) 72, 371
BbvI GCAGC 1 cut(s) 180
BccI CCATC 6 cut(s) 473, 586, 670, 785, 823, 883
BceAI ACGGC 2 cut(s) 58, 120
BcnI CCSGG 1 cut(s) 528
BfaI CTAG 1 cut(s) 53
BfmI CTRYAG 1 cut(s) 822
BfoI RGCGCY 2 cut(s) 92, 181
BisI GCNGC 6 cut(s) 6, 46, 87, 106, 169, 192
BlsI GCNGC 6 cut(s) 7, 47, 88, 107, 170, 193
Bme1390I CCNGG 1 cut(s) 528
Bme18I GGWCC 2 cut(s) 764, 872
BmgT120I GGNCC 4 cut(s) 530, 764, 772, 872
BmiI GGNNCC 3 cut(s) 90, 276, 873
BmrFI CCNGG 1 cut(s) 528
BmrI ACTGGG 1 cut(s) 137
BmsI GCATC 2 cut(s) 429, 589
BmuI ACTGGG 1 cut(s) 137
BpiI GAAGAC 2 cut(s) 72, 371
BpmI CTGGAG 2 cut(s) 49, 689
BpuMI CCSGG 1 cut(s) 528
BsaAI YACGTR 1 cut(s) 453
BsaHI GRCGYC 1 cut(s) 89
BsaJI CCNNGG 5 cut(s) 74, 207, 415, 472, 484
Bse1I ACTGG 4 cut(s) 143, 278, 740, 890
Bse3DI GCAATG 1 cut(s) 524
BseDI CCNNGG 5 cut(s) 74, 207, 415, 472, 484
BseGI GGATG 3 cut(s) 220, 597, 894
BseMI GCAATG 1 cut(s) 524
BseNI ACTGG 4 cut(s) 143, 278, 740, 890
BseRI GAGGAG 2 cut(s) 52, 186
BseSI GKGCMC 1 cut(s) 713
BseX3I CGGCCG 1 cut(s) 103
BseXI GCAGC 1 cut(s) 180
Bsh1236I CGCG 4 cut(s) 8, 76, 108, 474
Bsh1285I CGRYCG 1 cut(s) 106
BshFI GGCC 6 cut(s) 5, 48, 105, 483, 531, 774
BshNI GGYRCC 1 cut(s) 88
BsiEI CGRYCG 1 cut(s) 106
BsiSI CCGG 1 cut(s) 528
BslFI GGGAC 1 cut(s) 885
BsmFI GGGAC 1 cut(s) 885
BsnI GGCC 6 cut(s) 5, 48, 105, 483, 531, 774
Bsp1286I GDGCHC 2 cut(s) 683, 713
Bsp143I GATC 5 cut(s) 238, 286, 646, 736, 840
BspANI GGCC 6 cut(s) 5, 48, 105, 483, 531, 774
BspFNI CGCG 4 cut(s) 8, 76, 108, 474
BspLI GGNNCC 3 cut(s) 90, 276, 873
BspPI GGATC 4 cut(s) 233, 641, 731, 835
BspT107I GGYRCC 1 cut(s) 88
BsrBI CCGCTC 1 cut(s) 194
BsrDI GCAATG 1 cut(s) 524
BsrI ACTGG 4 cut(s) 143, 278, 740, 890
BssECI CCNNGG 5 cut(s) 74, 207, 415, 472, 484
BssMI GATC 5 cut(s) 238, 286, 646, 736, 840
BssNAI GTATAC 2 cut(s) 112, 456
BssNI GRCGYC 1 cut(s) 89
BssT1I CCWWGG 3 cut(s) 207, 415, 484
Bst1107I GTATAC 2 cut(s) 112, 456
Bst4CI ACNGT 4 cut(s) 14, 20, 331, 823
BstACI GRCGYC 1 cut(s) 89
BstAPI GCANNNNNTGC 1 cut(s) 426
BstBAI YACGTR 1 cut(s) 453
BstC8I GCNNGC 1 cut(s) 93
BstDEI CTNAG 2 cut(s) 148, 918
BstDSI CCRYGG 2 cut(s) 74, 472
BstF5I GGATG 3 cut(s) 220, 597, 894
BstFNI CGCG 4 cut(s) 8, 76, 108, 474
BstH2I RGCGCY 2 cut(s) 92, 181
BstHHI GCGC 3 cut(s) 91, 168, 180
BstKTI GATC 5 cut(s) 241, 289, 649, 739, 843
BstMBI GATC 5 cut(s) 238, 286, 646, 736, 840
BstMCI CGRYCG 1 cut(s) 106
BstMWI GCNNNNNNNGC 5 cut(s) 92, 177, 426, 480, 528
BstSCI CCNGG 1 cut(s) 526
BstSFI CTRYAG 1 cut(s) 822
BstSLI GKGCMC 1 cut(s) 713
BstSNI TACGTA 1 cut(s) 453
BstUI CGCG 4 cut(s) 8, 76, 108, 474
BstV1I GCAGC 1 cut(s) 180
BstV2I GAAGAC 2 cut(s) 72, 371
BstX2I RGATCY 1 cut(s) 736
BstYI RGATCY 1 cut(s) 736
BstZ17I GTATAC 2 cut(s) 112, 456
BstZI CGGCCG 1 cut(s) 103
BsuRI GGCC 6 cut(s) 5, 48, 105, 483, 531, 774
BtgI CCRYGG 2 cut(s) 74, 472
BtsCI GGATG 3 cut(s) 220, 597, 894
BtsIMutI CAGTG 1 cut(s) 883
Cac8I GCNNGC 1 cut(s) 93
CfoI GCGC 3 cut(s) 91, 168, 180
Cfr13I GGNCC 4 cut(s) 530, 764, 772, 872
Cfr42I CCGCGG 2 cut(s) 77, 475
CseI GACGC 1 cut(s) 128
Csp6I GTAC 1 cut(s) 10
CviAII CATG 1 cut(s) 832
CviQI GTAC 1 cut(s) 10
DdeI CTNAG 2 cut(s) 148, 918
DinI GGCGCC 1 cut(s) 90
DpnI GATC 5 cut(s) 240, 288, 648, 738, 842
DpnII GATC 5 cut(s) 238, 286, 646, 736, 840
EaeI YGGCCR 4 cut(s) 3, 46, 103, 481
EagI CGGCCG 1 cut(s) 103
EclXI CGGCCG 1 cut(s) 103
Eco105I TACGTA 1 cut(s) 453
Eco130I CCWWGG 3 cut(s) 207, 415, 484
Eco24I GRGCYC 1 cut(s) 683
Eco32I GATATC 1 cut(s) 693
Eco47I GGWCC 2 cut(s) 764, 872
Eco52I CGGCCG 1 cut(s) 103
EcoO109I RGGNCCY 2 cut(s) 772, 872
EcoRV GATATC 1 cut(s) 693
EcoT14I CCWWGG 3 cut(s) 207, 415, 484
EcoT22I ATGCAT 2 cut(s) 340, 524
EcoT38I GRGCYC 1 cut(s) 683
EgeI GGCGCC 1 cut(s) 90
EheI GGCGCC 1 cut(s) 90
ErhI CCWWGG 3 cut(s) 207, 415, 484
FaeI CATG 1 cut(s) 835
FaqI GGGAC 1 cut(s) 885
FatI CATG 1 cut(s) 831
FauI CCCGC 4 cut(s) 81, 140, 479, 788
FauNDI CATATG 2 cut(s) 653, 760
FblI GTMKAC 2 cut(s) 111, 455
Fnu4HI GCNGC 6 cut(s) 6, 46, 87, 106, 169, 192
FokI GGATG 3 cut(s) 227, 604, 901
FriOI GRGCYC 1 cut(s) 683
Fsp4HI GCNGC 6 cut(s) 6, 46, 87, 106, 169, 192
FspBI CTAG 1 cut(s) 53
GlaI GCGC 3 cut(s) 90, 167, 179
GluI GCNGC 6 cut(s) 6, 46, 87, 106, 169, 192
GsuI CTGGAG 2 cut(s) 49, 689
HaeII RGCGCY 2 cut(s) 92, 181
HaeIII GGCC 6 cut(s) 5, 48, 105, 483, 531, 774
HapII CCGG 1 cut(s) 528
HgaI GACGC 1 cut(s) 128
HhaI GCGC 3 cut(s) 91, 168, 180
Hin1I GRCGYC 1 cut(s) 89
Hin1II CATG 1 cut(s) 835
Hin6I GCGC 3 cut(s) 89, 166, 178
HinP1I GCGC 3 cut(s) 89, 166, 178
HincII GTYRAC 1 cut(s) 829
HindII GTYRAC 1 cut(s) 829
HinfI GANTC 3 cut(s) 387, 664, 911
HpaII CCGG 1 cut(s) 528
HphI GGTGA 5 cut(s) 196, 488, 675, 850, 904
Hpy166II GTNNAC 3 cut(s) 112, 456, 829
Hpy188I TCNGA 3 cut(s) 126, 294, 506
Hpy188III TCNNGA 3 cut(s) 252, 391, 668
Hpy8I GTNNAC 3 cut(s) 112, 456, 829
Hpy99I CGWCG 2 cut(s) 122, 247
HpyAV CCTTC 2 cut(s) 445, 829
HpyCH4III ACNGT 4 cut(s) 14, 20, 331, 823
HpyCH4IV ACGT 3 cut(s) 228, 376, 452
HpyCH4V TGCA 4 cut(s) 95, 338, 522, 554
HpyF10VI GCNNNNNNNGC 5 cut(s) 92, 177, 426, 480, 528
HpyF3I CTNAG 2 cut(s) 148, 918
HpySE526I ACGT 3 cut(s) 228, 376, 452
Hsp92I GRCGYC 1 cut(s) 89
Hsp92II CATG 1 cut(s) 835
HspAI GCGC 3 cut(s) 89, 166, 178
KasI GGCGCC 1 cut(s) 88
KspI CCGCGG 2 cut(s) 77, 475
Kzo9I GATC 5 cut(s) 238, 286, 646, 736, 840
LmnI GCTCC 4 cut(s) 127, 199, 254, 302
Lsp1109I GCAGC 1 cut(s) 180
LweI GCATC 2 cut(s) 429, 589
MaeI CTAG 1 cut(s) 53
MaeII ACGT 3 cut(s) 228, 376, 452
MaeIII GTNAC 3 cut(s) 14, 488, 892
MalI GATC 5 cut(s) 240, 288, 648, 738, 842
MbiI CCGCTC 1 cut(s) 194
MboI GATC 5 cut(s) 238, 286, 646, 736, 840
MboII GAAGA 5 cut(s) 72, 281, 371, 685, 911
MfeI CAATTG 1 cut(s) 369
MflI RGATCY 1 cut(s) 736
MhlI GDGCHC 2 cut(s) 683, 713
MlsI TGGCCA 1 cut(s) 483
MluCI AATT 6 cut(s) 269, 369, 496, 574, 611, 878
MluNI TGGCCA 1 cut(s) 483
Mly113I GGCGCC 1 cut(s) 89
MnlI CCTC 8 cut(s) 70, 73, 191, 205, 207, 414, 763, 855
Mox20I TGGCCA 1 cut(s) 483
Mph1103I ATGCAT 2 cut(s) 340, 524
MroXI GAANNNNTTC 1 cut(s) 378
MscI TGGCCA 1 cut(s) 483
MseI TTAA 4 cut(s) 162, 513, 548, 614
MslI CAYNNNNRTG 1 cut(s) 836
Msp20I TGGCCA 1 cut(s) 483
MspA1I CMGCKG 3 cut(s) 76, 264, 474
MspI CCGG 1 cut(s) 528
MspR9I CCNGG 1 cut(s) 528
MunI CAATTG 1 cut(s) 369
MvnI CGCG 4 cut(s) 8, 76, 108, 474
MwoI GCNNNNNNNGC 5 cut(s) 92, 177, 426, 480, 528
NarI GGCGCC 1 cut(s) 89
NciI CCSGG 1 cut(s) 528
NdeI CATATG 2 cut(s) 653, 760
NdeII GATC 5 cut(s) 238, 286, 646, 736, 840
NlaIII CATG 1 cut(s) 835
NlaIV GGNNCC 3 cut(s) 90, 276, 873
NmeAIII GCCGAG 1 cut(s) 344
NmuCI GTSAC 2 cut(s) 488, 892
NsiI ATGCAT 2 cut(s) 340, 524
PcsI WCGNNNNNNNCGW 1 cut(s) 382
PdmI GAANNNNTTC 1 cut(s) 378
PfeI GAWTC 3 cut(s) 387, 664, 911
PkrI GCNGC 6 cut(s) 7, 47, 88, 107, 170, 193
PluTI GGCGCC 1 cut(s) 92
Ppu21I YACGTR 1 cut(s) 453
PpuMI RGGWCCY 1 cut(s) 872
Psp5II RGGWCCY 1 cut(s) 872
PspN4I GGNNCC 3 cut(s) 90, 276, 873
PspPI GGNCC 4 cut(s) 530, 764, 772, 872
PspPPI RGGWCCY 1 cut(s) 872
PsuI RGATCY 1 cut(s) 736
PvuII CAGCTG 1 cut(s) 264
RsaI GTAC 1 cut(s) 11
RsaNI GTAC 1 cut(s) 10
RseI CAYNNNNRTG 1 cut(s) 836
SacII CCGCGG 2 cut(s) 77, 475
SaqAI TTAA 4 cut(s) 162, 513, 548, 614
SatI GCNGC 6 cut(s) 6, 46, 87, 106, 169, 192
Sau3AI GATC 5 cut(s) 238, 286, 646, 736, 840
Sau96I GGNCC 4 cut(s) 530, 764, 772, 872
ScrFI CCNGG 1 cut(s) 528
SduI GDGCHC 2 cut(s) 683, 713
SfaNI GCATC 2 cut(s) 429, 589
SfcI CTRYAG 1 cut(s) 822
SfoI GGCGCC 1 cut(s) 90
Sfr303I CCGCGG 2 cut(s) 77, 475
SgrBI CCGCGG 2 cut(s) 77, 475
SinI GGWCC 2 cut(s) 764, 872
SmiMI CAYNNNNRTG 1 cut(s) 836
SnaBI TACGTA 1 cut(s) 453
Sse9I AATT 6 cut(s) 269, 369, 496, 574, 611, 878
SspDI GGCGCC 1 cut(s) 88
SspMI CTAG 1 cut(s) 53
StyD4I CCNGG 1 cut(s) 526
StyI CCWWGG 3 cut(s) 207, 415, 484
TaaI ACNGT 4 cut(s) 14, 20, 331, 823
TaiI ACGT 3 cut(s) 231, 379, 455
TaqI TCGA 3 cut(s) 117, 399, 859
TasI AATT 6 cut(s) 269, 369, 496, 574, 611, 878
TauI GCSGC 5 cut(s) 8, 48, 89, 108, 194
TfiI GAWTC 3 cut(s) 387, 664, 911
Tru1I TTAA 4 cut(s) 162, 513, 548, 614
Tru9I TTAA 4 cut(s) 162, 513, 548, 614
TscAI CASTG 1 cut(s) 890
TseFI GTSAC 2 cut(s) 488, 892
TseI GCWGC 1 cut(s) 168
Tsp45I GTSAC 2 cut(s) 488, 892
TspDTI ATGAA 4 cut(s) 231, 532, 848, 924
TspGWI ACGGA 2 cut(s) 148, 231
TspRI CASTG 1 cut(s) 890
VpaK11BI GGWCC 2 cut(s) 764, 872
XapI RAATTY 1 cut(s) 496
XmiI GTMKAC 2 cut(s) 111, 455
XmnI GAANNNNTTC 1 cut(s) 378
XspI CTAG 1 cut(s) 53
Zsp2I ATGCAT 2 cut(s) 340, 524
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.