Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0012823

Physical Location & Seq

Genomic Coordinates Reverse (-)

594918 .. 596722

Gene Structure 1805 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGGATTTGCAGCACAACGACTTCGATCGCATTCTTTTCTTCGAACACGCCCGCAAGATCTCCGAAGCCACCTACATTAAGAACCCTCTCGATGCCGATAACTTGACGAGGTGGGCTGGAGCTCTGCTGCAGCTTTCCCAGTTTCAGAATGTTTTGGAGTCAAAGAAGATGACTCAAGATGGTATTTCGAAGCTGGAGGAGGCCTTGATGATTAATCCTAGGAAACATGATGCTCTGTGGTGTCTGGGAAATGCTCAAACTGCTCGCGGATTTTTTACTCCGGACCACAATGAGGCAAGGGTTTATTTCCAAAAGGCGTCTCGGTGTTTCCAGAAGGCTCTCGATGAGGAGCCGGGAAATGATCTGTATCGGAAGTCTTTAGAAGTGGCTGCTAAGGCCCCGCAACTGCATTTGGATCTACACAAGCGTGGTTTGGGTCAACTGGGGATGGAGGCTGCTGCTGGAGCAGGAACTGGACCTTCTACTTCAATTGGTGGAAAGACTACAAAGAAAAACAAGAACAGCAATCTGAAGTATGACATATTTGGTTGGATAATCCTTGGTGTCGGAATTTTTGCTTGGCTCAGATATGCGAGGTCGCATATGCCTCCTCCTCCGCTTCCGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005742 GO:0005743 GO:0005744 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009987 GO:0015031 GO:0015399 GO:0015405 GO:0015450 GO:0015833 GO:0016020 GO:0016043 GO:0019866 GO:0019867 GO:0022804 GO:0022857 GO:0022884 GO:0031090 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0098588 GO:0098796 GO:0098798 GO:0098799 GO:0098800 GO:0098805 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TOM20_plant

Protein Analysis

210

Amino Acids

23.48

Weight (kDa)

9.18

Isoelectric Point (pI)

41.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TOM20_plant	PF06552	8 - 198	6.3e-84	Plant specific mitochondrial import receptor subunit TOM20

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012823)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27080 AT5G40930 AT5G40930
fragaria_vesca	FvH4_6g17110 FvH4_6g53520
malus_domestica	MD09G1010900.v1.1
prunus_persica	Prupe.3G306200_v2.0.a1
pyrus_communis	pycom111g00910
rosa_chinensis	RchiOBHm_Chr2g0175551
rosa_laevigata	RLG00000022338
rosa_multiflora	Rmu_sc0008219.1_g000004 Rmu_sc0013970.1_g000005
rosa_rugosa	Rorug02G0586500
rosa_samantha	Rh2AG665300 Rh2BG676100 Rh2CG639300 Rh2DG690100
rosa_wichuraiana	Rw2G054540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	267
AccIII	TCCGGA	1 cut(s)	280
AciI	CCGC	5 cut(s)	52, 267, 401, 617, 623
AclWI	GGATC	1 cut(s)	423
AcsI	RAATTY	1 cut(s)	570
AcuI	CTGAAG	1 cut(s)	551
AcyI	GRCGYC	1 cut(s)	317
AfiI	CCNNNNNNNGG	1 cut(s)	292
AgsI	TTSAA	1 cut(s)	489
AjuI	GAANNNNNNNTTGG	2 cut(s)	562, 594
AleI	CACNNNNGTG	1 cut(s)	426
AluBI	AGCT	3 cut(s)	122, 133, 193
AluI	AGCT	3 cut(s)	122, 133, 193
Alw21I	GWGCWC	1 cut(s)	124
Alw26I	GTCTC	1 cut(s)	324
AlwI	GGATC	1 cut(s)	423
AlwNI	CAGNNNCTG	1 cut(s)	473
Aor13HI	TCCGGA	1 cut(s)	280
AoxI	GGCC	2 cut(s)	201, 396
ApeKI	GCWGC	6 cut(s)	10, 127, 130, 389, 455, 458
ApoI	RAATTY	1 cut(s)	570
AseI	ATTAAT	1 cut(s)	213
AspA2I	CCTAGG	1 cut(s)	218
AspS9I	GGNCC	3 cut(s)	283, 397, 476
AsuC2I	CCSGG	1 cut(s)	354
AsuII	TTCGAA	2 cut(s)	42, 188
AvaII	GGWCC	2 cut(s)	283, 476
AvrII	CCTAGG	1 cut(s)	218
BanII	GRGCYC	1 cut(s)	124
Bbv12I	GWGCWC	1 cut(s)	124
BbvI	GCAGC	6 cut(s)	22, 114, 142, 376, 442, 445
BccI	CCATC	2 cut(s)	173, 442
BcnI	CCSGG	1 cut(s)	354
BcoDI	GTCTC	1 cut(s)	324
BfaI	CTAG	1 cut(s)	219
BfmI	CTRYAG	1 cut(s)	128
BglII	AGATCT	1 cut(s)	57
BisI	GCNGC	6 cut(s)	11, 128, 131, 390, 456, 459
BlnI	CCTAGG	1 cut(s)	218
BlsI	GCNGC	6 cut(s)	12, 129, 132, 391, 457, 460
Bme1390I	CCNGG	1 cut(s)	354
Bme18I	GGWCC	2 cut(s)	283, 476
BmgT120I	GGNCC	3 cut(s)	283, 397, 476
BmiI	GGNNCC	2 cut(s)	351, 399
BmrFI	CCNGG	1 cut(s)	354
BmrI	ACTGGG	2 cut(s)	133, 452
BmsI	GCATC	2 cut(s)	82, 220
BmuI	ACTGGG	2 cut(s)	133, 452
BpmI	CTGGAG	3 cut(s)	138, 215, 483
Bpu10I	CCTNAGC	1 cut(s)	393
Bpu14I	TTCGAA	2 cut(s)	42, 188
BpuEI	CTTGAG	1 cut(s)	159
BpuMI	CCSGG	1 cut(s)	354
BsaBI	GATNNNNATC	1 cut(s)	366
BsaHI	GRCGYC	1 cut(s)	317
BsaJI	CCNNGG	2 cut(s)	218, 559
BsaWI	WCCGGW	1 cut(s)	280
Bsc4I	CCNNNNNNNGG	1 cut(s)	292
Bse1I	ACTGG	3 cut(s)	139, 447, 478
Bse8I	GATNNNNATC	1 cut(s)	366
BseAI	TCCGGA	1 cut(s)	280
BseDI	CCNNGG	2 cut(s)	218, 559
BseGI	GGATG	1 cut(s)	453
BseJI	GATNNNNATC	1 cut(s)	366
BseLI	CCNNNNNNNGG	1 cut(s)	292
BseMII	CTCAG	1 cut(s)	598
BseNI	ACTGG	3 cut(s)	139, 447, 478
BseRI	GAGGAG	4 cut(s)	212, 362, 600, 603
BseXI	GCAGC	6 cut(s)	22, 114, 142, 376, 442, 445
Bsh1236I	CGCG	1 cut(s)	267
Bsh1285I	CGRYCG	1 cut(s)	28
BshFI	GGCC	2 cut(s)	203, 398
BsiEI	CGRYCG	1 cut(s)	28
BsiHKAI	GWGCWC	1 cut(s)	124
BsiSI	CCGG	2 cut(s)	281, 353
BslI	CCNNNNNNNGG	1 cut(s)	292
BsmAI	GTCTC	1 cut(s)	324
BsmBI	CGTCTC	1 cut(s)	324
BsmI	GAATGC	1 cut(s)	30
BsnI	GGCC	2 cut(s)	203, 398
Bsp119I	TTCGAA	2 cut(s)	42, 188
Bsp1286I	GDGCHC	1 cut(s)	124
Bsp13I	TCCGGA	1 cut(s)	280
Bsp143I	GATC	4 cut(s)	25, 57, 361, 415
BspACI	CCGC	5 cut(s)	52, 267, 401, 617, 623
BspANI	GGCC	2 cut(s)	203, 398
BspCNI	CTCAG	1 cut(s)	597
BspEI	TCCGGA	1 cut(s)	280
BspFNI	CGCG	1 cut(s)	267
BspLI	GGNNCC	2 cut(s)	351, 399
BspMAI	CTGCAG	1 cut(s)	132
BspPI	GGATC	1 cut(s)	423
BspT104I	TTCGAA	2 cut(s)	42, 188
BsrI	ACTGG	3 cut(s)	139, 447, 478
BssECI	CCNNGG	2 cut(s)	218, 559
BssMI	GATC	4 cut(s)	25, 57, 361, 415
BssNI	GRCGYC	1 cut(s)	317
BssT1I	CCWWGG	2 cut(s)	218, 559
BstACI	GRCGYC	1 cut(s)	317
BstBI	TTCGAA	2 cut(s)	42, 188
BstC8I	GCNNGC	2 cut(s)	52, 265
BstDEI	CTNAG	2 cut(s)	393, 584
BstF5I	GGATG	1 cut(s)	453
BstFNI	CGCG	1 cut(s)	267
BstKTI	GATC	4 cut(s)	28, 60, 364, 418
BstMAI	GTCTC	1 cut(s)	324
BstMBI	GATC	4 cut(s)	25, 57, 361, 415
BstMCI	CGRYCG	1 cut(s)	28
BstMWI	GCNNNNNNNGC	3 cut(s)	260, 395, 464
BstSCI	CCNGG	1 cut(s)	352
BstSFI	CTRYAG	1 cut(s)	128
BstUI	CGCG	1 cut(s)	267
BstV1I	GCAGC	6 cut(s)	22, 114, 142, 376, 442, 445
BstX2I	RGATCY	2 cut(s)	57, 415
BstYI	RGATCY	2 cut(s)	57, 415
BsuRI	GGCC	2 cut(s)	203, 398
BtsCI	GGATG	1 cut(s)	453
Cac8I	GCNNGC	2 cut(s)	52, 265
CaiI	CAGNNNCTG	1 cut(s)	473
Cfr13I	GGNCC	3 cut(s)	283, 397, 476
CseI	GACGC	1 cut(s)	306
CviAII	CATG	1 cut(s)	227
DdeI	CTNAG	2 cut(s)	393, 584
DpnI	GATC	4 cut(s)	27, 59, 363, 417
DpnII	GATC	4 cut(s)	25, 57, 361, 415
Ecl136II	GAGCTC	1 cut(s)	122
Eco130I	CCWWGG	2 cut(s)	218, 559
Eco147I	AGGCCT	1 cut(s)	203
Eco24I	GRGCYC	1 cut(s)	124
Eco47I	GGWCC	2 cut(s)	283, 476
Eco53kI	GAGCTC	1 cut(s)	122
Eco57I	CTGAAG	1 cut(s)	551
EcoICRI	GAGCTC	1 cut(s)	122
EcoO109I	RGGNCCY	1 cut(s)	397
EcoT14I	CCWWGG	2 cut(s)	218, 559
EcoT38I	GRGCYC	1 cut(s)	124
ErhI	CCWWGG	2 cut(s)	218, 559
Esp3I	CGTCTC	1 cut(s)	324
FaeI	CATG	1 cut(s)	230
FaiI	YATR	6 cut(s)	228, 537, 542, 591, 603, 605
FatI	CATG	1 cut(s)	226
FauI	CCCGC	2 cut(s)	59, 408
FauNDI	CATATG	1 cut(s)	603
Fnu4HI	GCNGC	6 cut(s)	11, 128, 131, 390, 456, 459
FokI	GGATG	1 cut(s)	460
FriOI	GRGCYC	1 cut(s)	124
Fsp4HI	GCNGC	6 cut(s)	11, 128, 131, 390, 456, 459
FspBI	CTAG	1 cut(s)	219
GluI	GCNGC	6 cut(s)	11, 128, 131, 390, 456, 459
GsuI	CTGGAG	3 cut(s)	138, 215, 483
HaeIII	GGCC	2 cut(s)	203, 398
HapII	CCGG	2 cut(s)	281, 353
HgaI	GACGC	1 cut(s)	306
Hin1I	GRCGYC	1 cut(s)	317
Hin1II	CATG	1 cut(s)	230
HincII	GTYRAC	1 cut(s)	440
HindII	GTYRAC	1 cut(s)	440
HinfI	GANTC	2 cut(s)	158, 172
HpaII	CCGG	2 cut(s)	281, 353
Hpy166II	GTNNAC	1 cut(s)	440
Hpy188I	TCNGA	6 cut(s)	64, 147, 372, 531, 569, 587
Hpy188III	TCNNGA	5 cut(s)	89, 176, 281, 331, 341
Hpy8I	GTNNAC	1 cut(s)	440
HpyAV	CCTTC	2 cut(s)	328, 489
HpyCH4V	TGCA	3 cut(s)	10, 130, 409
HpyF10VI	GCNNNNNNNGC	3 cut(s)	260, 395, 464
HpyF3I	CTNAG	2 cut(s)	393, 584
Hsp92I	GRCGYC	1 cut(s)	317
Hsp92II	CATG	1 cut(s)	230
Kpn2I	TCCGGA	1 cut(s)	280
Kzo9I	GATC	4 cut(s)	25, 57, 361, 415
LmnI	GCTCC	3 cut(s)	119, 349, 464
Lsp1109I	GCAGC	6 cut(s)	22, 114, 142, 376, 442, 445
LweI	GCATC	2 cut(s)	82, 220
MaeI	CTAG	1 cut(s)	219
MalI	GATC	4 cut(s)	27, 59, 363, 417
MboI	GATC	4 cut(s)	25, 57, 361, 415
MboII	GAAGA	2 cut(s)	31, 178
MfeI	CAATTG	1 cut(s)	489
MflI	RGATCY	2 cut(s)	57, 415
MhlI	GDGCHC	1 cut(s)	124
MluCI	AATT	2 cut(s)	489, 570
MlyI	GAGTC	2 cut(s)	166, 167
MmeI	TCCRAC	2 cut(s)	530, 547
MroI	TCCGGA	1 cut(s)	280
MseI	TTAA	2 cut(s)	78, 213
MslI	CAYNNNNRTG	1 cut(s)	426
MspI	CCGG	2 cut(s)	281, 353
MspR9I	CCNGG	1 cut(s)	354
MunI	CAATTG	1 cut(s)	489
Mva1269I	GAATGC	1 cut(s)	30
MvnI	CGCG	1 cut(s)	267
MwoI	GCNNNNNNNGC	3 cut(s)	260, 395, 464
NciI	CCSGG	1 cut(s)	354
NdeI	CATATG	1 cut(s)	603
NdeII	GATC	4 cut(s)	25, 57, 361, 415
NlaIII	CATG	1 cut(s)	230
NlaIV	GGNNCC	2 cut(s)	351, 399
NspV	TTCGAA	2 cut(s)	42, 188
OliI	CACNNNNGTG	1 cut(s)	426
PceI	AGGCCT	1 cut(s)	203
PctI	GAATGC	1 cut(s)	30
PkrI	GCNGC	6 cut(s)	12, 129, 132, 391, 457, 460
Ple19I	CGATCG	1 cut(s)	28
PleI	GAGTC	2 cut(s)	166, 166
PpsI	GAGTC	2 cut(s)	166, 166
PshBI	ATTAAT	1 cut(s)	213
Psp124BI	GAGCTC	1 cut(s)	124
PspN4I	GGNNCC	2 cut(s)	351, 399
PspPI	GGNCC	3 cut(s)	283, 397, 476
PstI	CTGCAG	1 cut(s)	132
PstNI	CAGNNNCTG	1 cut(s)	473
PsuI	RGATCY	2 cut(s)	57, 415
PvuI	CGATCG	1 cut(s)	28
RseI	CAYNNNNRTG	1 cut(s)	426
SacI	GAGCTC	1 cut(s)	124
SaqAI	TTAA	2 cut(s)	78, 213
SatI	GCNGC	6 cut(s)	11, 128, 131, 390, 456, 459
Sau3AI	GATC	4 cut(s)	25, 57, 361, 415
Sau96I	GGNCC	3 cut(s)	283, 397, 476
SchI	GAGTC	2 cut(s)	166, 167
ScrFI	CCNGG	1 cut(s)	354
SduI	GDGCHC	1 cut(s)	124
SetI	ASST	7 cut(s)	74, 113, 124, 135, 195, 481, 599
SfaNI	GCATC	2 cut(s)	82, 220
SfcI	CTRYAG	1 cut(s)	128
SfuI	TTCGAA	2 cut(s)	42, 188
SinI	GGWCC	2 cut(s)	283, 476
SmiMI	CAYNNNNRTG	1 cut(s)	426
SmlI	CTYRAG	1 cut(s)	174
SmoI	CTYRAG	1 cut(s)	174
Sse9I	AATT	2 cut(s)	489, 570
SseBI	AGGCCT	1 cut(s)	203
SsiI	CCGC	5 cut(s)	52, 267, 401, 617, 623
SspMI	CTAG	1 cut(s)	219
SstI	GAGCTC	1 cut(s)	124
StuI	AGGCCT	1 cut(s)	203
StyD4I	CCNGG	1 cut(s)	352
StyI	CCWWGG	2 cut(s)	218, 559
TaqI	TCGA	5 cut(s)	24, 42, 90, 188, 342
TasI	AATT	2 cut(s)	489, 570
Tru1I	TTAA	2 cut(s)	78, 213
Tru9I	TTAA	2 cut(s)	78, 213
TseI	GCWGC	6 cut(s)	10, 127, 130, 389, 455, 458
VpaK11BI	GGWCC	2 cut(s)	283, 476
VspI	ATTAAT	1 cut(s)	213
XapI	RAATTY	1 cut(s)	570
XmaJI	CCTAGG	1 cut(s)	218
XspI	CTAG	1 cut(s)	219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.