Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0010488

Physical Location & Seq

Genomic Coordinates Forward (+)

1100018 .. 1101436

Gene Structure 1419 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g01790.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGAAGCACAATGGCGAGCTCAGTTCTTTCCCCGCTGCGAACAAGCTGCTGAAGTTCGCTATAATCGGTCTCATTGCCTGCCTGGGCTTGCTCTGTTTGCACTACGGGTGTTCTTTCGGGCCGGGCTCGCGGAGATCCGACGAGGAAGCTTCCGGCTCCGATGGACTCCACCCGCTTTTCAGTGGGTTCGTTCTCCATCGCGATTTGGATGATTTGCATGACGATCAGGAGCACAACTCTGAGATCCTTAAAAGCTTGCCCATTTGTGATTTACAGTTTTCAGAGTTGATACCATGTCTTGATAGAAACCTTATCTACCAACTGCGATTGAAGCTGAATTTGACCTTTAGGGAGCACTATGAGCGGCATTGCCCGGCTCCAGAGCGGCGTTATAATTGCTTGATACCGCCCCCACTTGGTTATAAGATACCTATAAGATGGCCGGAAAGTAGAGATGTAGTGTGGAAGGCCAACATTCCACACACCCATCTTGCACAAGTGAAATCTGATCGATCAAATACAGTAGAATTGGATGGTTGTGAATGGGGAACGATCAGTTTTCCGGGTGGTGGGACGCATTTCCACGGTGGAGCTGATAAGTACATTGTTGCTCTTTCCAGGATGCTAAAGTTTCCTGGTGATAAATTCAACAATGGAGGCAATATCCGGAATGTTCTCGATGTGGGTTGTGGAGTTGCGAGTTTTGGGGCATATCTTCTTTCTCACAACGTCATAGCGCTGTCTCTTGCTCCGAATGATGCACATGAGAATCAAATACAATTTGCTCTAGAGAGGGGGATTCCATCCACTCTTGGTATCTTGGGTATAAAAAGACTTACTTATCCAAGCAGATCGATTTGGGGTGTCCAAGCTGGCTCATTGCTCACGCTGTCGAATAGATTGGCTTCAAAGAGATGGGATCCTGTTATTAGAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0005774 GO:0005794 GO:0005802 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009505 GO:0012505 GO:0016020 GO:0016740 GO:0016741 GO:0030312 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0032259 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0097708 GO:0098588 GO:0098791 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_29

Protein Analysis

313

Amino Acids

34.65

Weight (kDa)

8.07

Isoelectric Point (pI)

46.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010488)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14430 AT5G14430
fragaria_vesca	FvH4_6g51950
malus_domestica	MD09G1021500.v1.1 MD17G1021500.v1.1
prunus_persica	Prupe.3G294800_v2.0.a1 Prupe.3G294800_v2.0.a1 Prupe.3G294800_v2.0.a1
pyrus_communis	pycom111g01790 pycom17g01860
rosa_chinensis	RchiOBHm_Chr2g0173431
rosa_laevigata	RLG00000022189
rosa_multiflora	Rmu_ssc0000282.1_g000015
rosa_roxburghii	Rroxscaffold_2G00078860
rosa_rugosa	Rorug02G0568600 Rorug02G0568700
rosa_samantha	Rh2AG648800 Rh2BG659400 Rh2CG624700 Rh2DG674600
rosa_wichuraiana	Rw2G053260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	393, 423
AccBSI	CCGCTC	2 cut(s)	364, 385
AccII	CGCG	2 cut(s)	130, 201
AccIII	TCCGGA	1 cut(s)	666
AciI	CCGC	6 cut(s)	33, 130, 173, 364, 385, 407
AclWI	GGATC	4 cut(s)	129, 238, 914, 927
AcoI	YGGCCR	1 cut(s)	440
AcsI	RAATTY	2 cut(s)	337, 644
AcuI	CTGAAG	1 cut(s)	71
AfaI	GTAC	1 cut(s)	602
AfeI	AGCGCT	1 cut(s)	738
AfiI	CCNNNNNNNGG	2 cut(s)	416, 569
AgsI	TTSAA	3 cut(s)	331, 649, 909
AjnI	CCWGG	3 cut(s)	81, 617, 634
AluBI	AGCT	8 cut(s)	19, 46, 149, 255, 334, 593, 872, 935
AluI	AGCT	8 cut(s)	19, 46, 149, 255, 334, 593, 872, 935
Alw21I	GWGCWC	3 cut(s)	21, 234, 357
Alw26I	GTCTC	2 cut(s)	74, 747
AlwI	GGATC	4 cut(s)	129, 238, 914, 927
Aor13HI	TCCGGA	1 cut(s)	666
Aor51HI	AGCGCT	1 cut(s)	738
AoxI	GGCC	3 cut(s)	119, 440, 468
ApeKI	GCWGC	2 cut(s)	35, 46
ApoI	RAATTY	2 cut(s)	337, 644
AspLEI	GCGC	1 cut(s)	739
AspS9I	GGNCC	1 cut(s)	119
AsuC2I	CCSGG	3 cut(s)	123, 374, 564
AsuHPI	GGTGA	1 cut(s)	650
BamHI	GGATCC	1 cut(s)	919
BanII	GRGCYC	2 cut(s)	21, 128
Bbv12I	GWGCWC	3 cut(s)	21, 234, 357
BbvI	GCAGC	2 cut(s)	22, 33
BccI	CCATC	7 cut(s)	155, 204, 432, 495, 527, 811, 909
BcgI	CGANNNNNNTGC	2 cut(s)	28, 62
BciT130I	CCWGG	3 cut(s)	83, 619, 636
BcnI	CCSGG	3 cut(s)	123, 374, 564
BcoDI	GTCTC	2 cut(s)	74, 747
BfaI	CTAG	1 cut(s)	788
BfoI	RGCGCY	1 cut(s)	740
BisI	GCNGC	4 cut(s)	36, 47, 365, 386
BlsI	GCNGC	4 cut(s)	37, 48, 366, 387
Bme1390I	CCNGG	6 cut(s)	83, 123, 374, 564, 619, 636
BmgT120I	GGNCC	1 cut(s)	119
BmiI	GGNNCC	3 cut(s)	157, 378, 921
BmrFI	CCNGG	6 cut(s)	83, 123, 374, 564, 619, 636
BmsI	GCATC	2 cut(s)	612, 748
BplI	GAGNNNNNCTC	2 cut(s)	221, 253
BpmI	CTGGAG	1 cut(s)	363
BpuMI	CCSGG	3 cut(s)	123, 374, 564
Bsa29I	ATCGAT	2 cut(s)	511, 854
BsaI	GGTCTC	1 cut(s)	74
BsaJI	CCNNGG	2 cut(s)	82, 583
BsaWI	WCCGGW	1 cut(s)	666
Bsc4I	CCNNNNNNNGG	2 cut(s)	416, 569
Bse3DI	GCAATG	3 cut(s)	72, 367, 878
BseAI	TCCGGA	1 cut(s)	666
BseBI	CCWGG	3 cut(s)	83, 619, 636
BseCI	ATCGAT	2 cut(s)	511, 854
BseDI	CCNNGG	2 cut(s)	82, 583
BseGI	GGATG	4 cut(s)	214, 538, 627, 803
BseLI	CCNNNNNNNGG	2 cut(s)	416, 569
BseMI	GCAATG	3 cut(s)	72, 367, 878
BseMII	CTCAG	2 cut(s)	34, 231
BseXI	GCAGC	2 cut(s)	22, 33
Bsh1236I	CGCG	2 cut(s)	130, 201
BshFI	GGCC	3 cut(s)	121, 442, 470
BshVI	ATCGAT	2 cut(s)	511, 854
BsiHKAI	GWGCWC	3 cut(s)	21, 234, 357
BsiSI	CCGG	6 cut(s)	122, 153, 374, 443, 563, 667
BslFI	GGGAC	1 cut(s)	586
BslI	CCNNNNNNNGG	2 cut(s)	416, 569
BsmAI	GTCTC	2 cut(s)	74, 747
BsmFI	GGGAC	1 cut(s)	586
BsnI	GGCC	3 cut(s)	121, 442, 470
Bso31I	GGTCTC	1 cut(s)	74
Bsp1286I	GDGCHC	4 cut(s)	21, 128, 234, 357
Bsp13I	TCCGGA	1 cut(s)	666
Bsp143I	GATC	8 cut(s)	134, 223, 243, 508, 512, 552, 851, 919
Bsp68I	TCGCGA	1 cut(s)	201
BspACI	CCGC	6 cut(s)	33, 130, 173, 364, 385, 407
BspANI	GGCC	3 cut(s)	121, 442, 470
BspCNI	CTCAG	2 cut(s)	33, 232
BspDI	ATCGAT	2 cut(s)	511, 854
BspEI	TCCGGA	1 cut(s)	666
BspFNI	CGCG	2 cut(s)	130, 201
BspLI	GGNNCC	3 cut(s)	157, 378, 921
BspPI	GGATC	4 cut(s)	129, 238, 914, 927
BspTNI	GGTCTC	1 cut(s)	74
BsrBI	CCGCTC	2 cut(s)	364, 385
BsrDI	GCAATG	3 cut(s)	72, 367, 878
BssECI	CCNNGG	2 cut(s)	82, 583
BssMI	GATC	8 cut(s)	134, 223, 243, 508, 512, 552, 851, 919
Bst2UI	CCWGG	3 cut(s)	83, 619, 636
Bst4CI	ACNGT	3 cut(s)	276, 523, 587
BstC8I	GCNNGC	6 cut(s)	17, 79, 89, 128, 257, 874
BstDEI	CTNAG	2 cut(s)	20, 240
BstDSI	CCRYGG	1 cut(s)	583
BstF5I	GGATG	4 cut(s)	214, 538, 627, 803
BstFNI	CGCG	2 cut(s)	130, 201
BstH2I	RGCGCY	1 cut(s)	740
BstHHI	GCGC	1 cut(s)	739
BstKTI	GATC	8 cut(s)	137, 226, 246, 511, 515, 555, 854, 922
BstMAI	GTCTC	2 cut(s)	74, 747
BstMBI	GATC	8 cut(s)	134, 223, 243, 508, 512, 552, 851, 919
BstMWI	GCNNNNNNNGC	4 cut(s)	97, 127, 331, 361
BstNI	CCWGG	3 cut(s)	83, 619, 636
BstSCI	CCNGG	6 cut(s)	81, 121, 372, 562, 617, 634
BstUI	CGCG	2 cut(s)	130, 201
BstV1I	GCAGC	2 cut(s)	22, 33
BstX2I	RGATCY	3 cut(s)	134, 243, 919
BstYI	RGATCY	3 cut(s)	134, 243, 919
Bsu15I	ATCGAT	2 cut(s)	511, 854
BsuRI	GGCC	3 cut(s)	121, 442, 470
BsuTUI	ATCGAT	2 cut(s)	511, 854
BtgI	CCRYGG	1 cut(s)	583
BtgZI	GCGATG	1 cut(s)	182
BtsCI	GGATG	4 cut(s)	214, 538, 627, 803
BtsIMutI	CAGTG	1 cut(s)	187
BtuMI	TCGCGA	1 cut(s)	201
Cac8I	GCNNGC	6 cut(s)	17, 79, 89, 128, 257, 874
CfoI	GCGC	1 cut(s)	739
Cfr13I	GGNCC	1 cut(s)	119
ClaI	ATCGAT	2 cut(s)	511, 854
CseI	GACGC	1 cut(s)	583
Csp6I	GTAC	1 cut(s)	601
CviAII	CATG	3 cut(s)	218, 294, 764
CviQI	GTAC	1 cut(s)	601
DdeI	CTNAG	2 cut(s)	20, 240
DpnI	GATC	8 cut(s)	136, 225, 245, 510, 514, 554, 853, 921
DpnII	GATC	8 cut(s)	134, 223, 243, 508, 512, 552, 851, 919
EaeI	YGGCCR	1 cut(s)	440
Ecl136II	GAGCTC	1 cut(s)	19
Eco24I	GRGCYC	2 cut(s)	21, 128
Eco31I	GGTCTC	1 cut(s)	74
Eco47III	AGCGCT	1 cut(s)	738
Eco53kI	GAGCTC	1 cut(s)	19
Eco57I	CTGAAG	1 cut(s)	71
EcoICRI	GAGCTC	1 cut(s)	19
EcoRII	CCWGG	3 cut(s)	81, 617, 634
EcoT38I	GRGCYC	2 cut(s)	21, 128
FaeI	CATG	3 cut(s)	221, 297, 767
FalI	AAGNNNNNCTT	2 cut(s)	823, 855
FaqI	GGGAC	1 cut(s)	586
FatI	CATG	3 cut(s)	217, 293, 763
FauI	CCCGC	2 cut(s)	40, 180
Fnu4HI	GCNGC	4 cut(s)	36, 47, 365, 386
FokI	GGATG	4 cut(s)	221, 545, 634, 790
FriOI	GRGCYC	2 cut(s)	21, 128
Fsp4HI	GCNGC	4 cut(s)	36, 47, 365, 386
FspBI	CTAG	1 cut(s)	788
GlaI	GCGC	1 cut(s)	738
GluI	GCNGC	4 cut(s)	36, 47, 365, 386
GsuI	CTGGAG	1 cut(s)	363
HaeII	RGCGCY	1 cut(s)	740
HaeIII	GGCC	3 cut(s)	121, 442, 470
HapII	CCGG	6 cut(s)	122, 153, 374, 443, 563, 667
HgaI	GACGC	1 cut(s)	583
HhaI	GCGC	1 cut(s)	739
Hin1II	CATG	3 cut(s)	221, 297, 767
Hin6I	GCGC	1 cut(s)	737
HinP1I	GCGC	1 cut(s)	737
HindIII	AAGCTT	2 cut(s)	147, 253
HinfI	GANTC	3 cut(s)	165, 769, 799
HpaII	CCGG	6 cut(s)	122, 153, 374, 443, 563, 667
HphI	GGTGA	1 cut(s)	650
Hpy188I	TCNGA	6 cut(s)	139, 160, 241, 283, 508, 753
Hpy188III	TCNNGA	7 cut(s)	200, 227, 299, 380, 667, 677, 788
Hpy99I	CGWCG	1 cut(s)	143
HpyAV	CCTTC	1 cut(s)	460
HpyCH4III	ACNGT	3 cut(s)	276, 523, 587
HpyCH4IV	ACGT	1 cut(s)	729
HpyCH4V	TGCA	4 cut(s)	100, 217, 494, 761
HpyF10VI	GCNNNNNNNGC	4 cut(s)	97, 127, 331, 361
HpyF3I	CTNAG	2 cut(s)	20, 240
HpySE526I	ACGT	1 cut(s)	729
Hsp92II	CATG	3 cut(s)	221, 297, 767
HspAI	GCGC	1 cut(s)	737
Kpn2I	TCCGGA	1 cut(s)	666
Kzo9I	GATC	8 cut(s)	134, 223, 243, 508, 512, 552, 851, 919
LmnI	GCTCC	6 cut(s)	161, 229, 352, 382, 590, 754
Lsp1109I	GCAGC	2 cut(s)	22, 33
LweI	GCATC	2 cut(s)	612, 748
MaeI	CTAG	1 cut(s)	788
MaeII	ACGT	1 cut(s)	729
MalI	GATC	8 cut(s)	136, 225, 245, 510, 514, 554, 853, 921
MbiI	CCGCTC	2 cut(s)	364, 385
MboI	GATC	8 cut(s)	134, 223, 243, 508, 512, 552, 851, 919
MboII	GAAGA	1 cut(s)	707
MflI	RGATCY	3 cut(s)	134, 243, 919
MhlI	GDGCHC	4 cut(s)	21, 128, 234, 357
MluCI	AATT	5 cut(s)	337, 394, 527, 644, 779
MlyI	GAGTC	1 cut(s)	159
MmeI	TCCRAC	1 cut(s)	162
MnlI	CCTC	3 cut(s)	136, 650, 786
MroI	TCCGGA	1 cut(s)	666
MseI	TTAA	1 cut(s)	249
MspA1I	CMGCKG	1 cut(s)	35
MspI	CCGG	6 cut(s)	122, 153, 374, 443, 563, 667
MspR9I	CCNGG	6 cut(s)	83, 123, 374, 564, 619, 636
MvaI	CCWGG	3 cut(s)	83, 619, 636
MvnI	CGCG	2 cut(s)	130, 201
MwoI	GCNNNNNNNGC	4 cut(s)	97, 127, 331, 361
NciI	CCSGG	3 cut(s)	123, 374, 564
NdeII	GATC	8 cut(s)	134, 223, 243, 508, 512, 552, 851, 919
NlaIII	CATG	3 cut(s)	221, 297, 767
NlaIV	GGNNCC	3 cut(s)	157, 378, 921
NruI	TCGCGA	1 cut(s)	201
PfeI	GAWTC	2 cut(s)	769, 799
PfoI	TCCNGGA	1 cut(s)	617
PkrI	GCNGC	4 cut(s)	37, 48, 366, 387
PleI	GAGTC	1 cut(s)	159
PpsI	GAGTC	1 cut(s)	159
PsiI	TTATAA	2 cut(s)	393, 423
Psp124BI	GAGCTC	1 cut(s)	21
Psp6I	CCWGG	3 cut(s)	81, 617, 634
PspGI	CCWGG	3 cut(s)	81, 617, 634
PspN4I	GGNNCC	3 cut(s)	157, 378, 921
PspPI	GGNCC	1 cut(s)	119
PsuI	RGATCY	3 cut(s)	134, 243, 919
RruI	TCGCGA	1 cut(s)	201
RsaI	GTAC	1 cut(s)	602
RsaNI	GTAC	1 cut(s)	601
SacI	GAGCTC	1 cut(s)	21
SaqAI	TTAA	1 cut(s)	249
SatI	GCNGC	4 cut(s)	36, 47, 365, 386
Sau3AI	GATC	8 cut(s)	134, 223, 243, 508, 512, 552, 851, 919
Sau96I	GGNCC	1 cut(s)	119
SchI	GAGTC	1 cut(s)	159
ScrFI	CCNGG	6 cut(s)	83, 123, 374, 564, 619, 636
SduI	GDGCHC	4 cut(s)	21, 128, 234, 357
SfaNI	GCATC	2 cut(s)	612, 748
Sse9I	AATT	5 cut(s)	337, 394, 527, 644, 779
SsiI	CCGC	6 cut(s)	33, 130, 173, 364, 385, 407
SspMI	CTAG	1 cut(s)	788
SstI	GAGCTC	1 cut(s)	21
StyD4I	CCNGG	6 cut(s)	81, 121, 372, 562, 617, 634
TaaI	ACNGT	3 cut(s)	276, 523, 587
TaiI	ACGT	1 cut(s)	732
TaqI	TCGA	4 cut(s)	511, 678, 854, 893
TaqII	GACCGA	1 cut(s)	56
TasI	AATT	5 cut(s)	337, 394, 527, 644, 779
TatI	WGTACW	1 cut(s)	600
TauI	GCSGC	2 cut(s)	367, 388
TfiI	GAWTC	2 cut(s)	769, 799
Tru1I	TTAA	1 cut(s)	249
Tru9I	TTAA	1 cut(s)	249
TscAI	CASTG	1 cut(s)	187
TseI	GCWGC	2 cut(s)	35, 46
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	187
XapI	RAATTY	2 cut(s)	337, 644
XbaI	TCTAGA	1 cut(s)	787
XspI	CTAG	1 cut(s)	788

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.