Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0010488

Physical Location & Seq

Genomic Coordinates Forward (+)

69398558 .. 69399139

Gene Structure 582 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0568600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGGAATCCATGCCAGTAATTGCTGAAGCCGAAAGCGATAGGTTTCAGTACGTCGGAGGCAGCCAACTCAAGTATCGCATCGAAAACAGTACTGCTCTGCAGACGCTCTACCAACTAAACATTGCTGGTGGATACTCAGACTCATCCCATGAAGACATCTACCGCCAGTGGGATGCTTACGATGACGAGTACTTGGATGATTTAAGTATAACAATCAGCGTGGGATCATCCAACTCTACAATCATTCAGCTCAAATTTGTTAAAATTCCTCAGTACTCAGCACCAGCGGATGTTTACCTTACAGGCCGATCCCTGGGGATGAAGAAATACATCAACAAGAACTACAATCTCACCTGGAGATTTCCGGTAGATTCTTCATTCCATTACCTTGTGAGGATGCATTTCTGTGAGTTTGAACCAGGTATTACCCAGTCCGGGGACAGAAAGTTTCAAATCAACATAAACAAGTCAAGTATAACACAATTGACAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0005774 GO:0005794 GO:0005802 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009505 GO:0012505 GO:0016020 GO:0016740 GO:0016741 GO:0030312 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0032259 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0097708 GO:0098588 GO:0098791 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_29

Protein Analysis

164

Amino Acids

18.84

Weight (kDa)

5.31

Isoelectric Point (pI)

47.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Malectin_like	PF12819	25 - 159	3.6e-11	Malectin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010488)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14430 AT5G14430
fragaria_vesca	FvH4_6g51950
malus_domestica	MD09G1021500.v1.1 MD17G1021500.v1.1
prunus_persica	Prupe.3G294800_v2.0.a1 Prupe.3G294800_v2.0.a1 Prupe.3G294800_v2.0.a1
pyrus_communis	pycom111g01790 pycom17g01860
rosa_chinensis	RchiOBHm_Chr2g0173431
rosa_laevigata	RLG00000022189
rosa_multiflora	Rmu_ssc0000282.1_g000015
rosa_roxburghii	Rroxscaffold_2G00078860
rosa_rugosa	Rorug02G0568600 Rorug02G0568700
rosa_samantha	Rh2AG648800 Rh2BG659400 Rh2CG624700 Rh2DG674600
rosa_wichuraiana	Rw2G053260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	163, 287
AclWI	GGATC	2 cut(s)	232, 303
AcsI	RAATTY	2 cut(s)	254, 264
AcuI	CTGAAG	1 cut(s)	45
AfaI	GTAC	4 cut(s)	50, 91, 191, 275
AfiI	CCNNNNNNNGG	4 cut(s)	169, 313, 435, 436
AgsI	TTSAA	2 cut(s)	416, 452
AjnI	CCWGG	3 cut(s)	312, 353, 418
AluBI	AGCT	1 cut(s)	250
AluI	AGCT	1 cut(s)	250
AlwI	GGATC	2 cut(s)	232, 303
AoxI	GGCC	1 cut(s)	304
ApeKI	GCWGC	1 cut(s)	60
ApoI	RAATTY	2 cut(s)	254, 264
AsuC2I	CCSGG	1 cut(s)	436
AsuHPI	GGTGA	1 cut(s)	343
BaeI	ACNNNNGTAYC	2 cut(s)	56, 89
BbsI	GAAGAC	1 cut(s)	159
BbvI	GCAGC	1 cut(s)	72
BciT130I	CCWGG	3 cut(s)	314, 355, 420
BciVI	GTATCC	1 cut(s)	125
BcnI	CCSGG	1 cut(s)	436
BfmI	CTRYAG	1 cut(s)	98
BfuI	GTATCC	1 cut(s)	125
BisI	GCNGC	1 cut(s)	61
BlsI	GCNGC	1 cut(s)	62
BmcAI	AGTACT	3 cut(s)	91, 191, 275
Bme1390I	CCNGG	4 cut(s)	314, 355, 420, 436
BmrFI	CCNGG	4 cut(s)	314, 355, 420, 436
BmrI	ACTGGG	1 cut(s)	424
BmsI	GCATC	3 cut(s)	87, 163, 387
BmuI	ACTGGG	1 cut(s)	424
BpiI	GAAGAC	1 cut(s)	159
BpmI	CTGGAG	1 cut(s)	376
BpuEI	CTTGAG	1 cut(s)	53
BpuMI	CCSGG	1 cut(s)	436
BsaJI	CCNNGG	3 cut(s)	312, 313, 435
BsaWI	WCCGGW	1 cut(s)	364
Bsc4I	CCNNNNNNNGG	4 cut(s)	169, 313, 435, 436
Bse1I	ACTGG	3 cut(s)	14, 166, 430
Bse3DI	GCAATG	1 cut(s)	120
BseBI	CCWGG	3 cut(s)	314, 355, 420
BseDI	CCNNGG	3 cut(s)	312, 313, 435
BseGI	GGATG	7 cut(s)	143, 178, 202, 227, 295, 324, 402
BseLI	CCNNNNNNNGG	4 cut(s)	169, 313, 435, 436
BseMI	GCAATG	1 cut(s)	120
BseMII	CTCAG	3 cut(s)	150, 284, 291
BseNI	ACTGG	3 cut(s)	14, 166, 430
BseXI	GCAGC	1 cut(s)	72
BshFI	GGCC	1 cut(s)	306
BsiSI	CCGG	2 cut(s)	365, 435
BslFI	GGGAC	1 cut(s)	452
BslI	CCNNNNNNNGG	4 cut(s)	169, 313, 435, 436
BsmFI	GGGAC	1 cut(s)	452
BsnI	GGCC	1 cut(s)	306
Bsp143I	GATC	2 cut(s)	224, 308
BspACI	CCGC	2 cut(s)	163, 287
BspANI	GGCC	1 cut(s)	306
BspCNI	CTCAG	3 cut(s)	149, 283, 290
BspMAI	CTGCAG	1 cut(s)	102
BspPI	GGATC	2 cut(s)	232, 303
BsrDI	GCAATG	1 cut(s)	120
BsrI	ACTGG	3 cut(s)	14, 166, 430
BssECI	CCNNGG	3 cut(s)	312, 313, 435
BssMI	GATC	2 cut(s)	224, 308
Bst2UI	CCWGG	3 cut(s)	314, 355, 420
Bst4CI	ACNGT	1 cut(s)	89
BstDEI	CTNAG	3 cut(s)	136, 270, 277
BstF5I	GGATG	7 cut(s)	143, 178, 202, 227, 295, 324, 402
BstKTI	GATC	2 cut(s)	227, 311
BstMBI	GATC	2 cut(s)	224, 308
BstNI	CCWGG	3 cut(s)	314, 355, 420
BstSCI	CCNGG	4 cut(s)	312, 353, 418, 434
BstSFI	CTRYAG	1 cut(s)	98
BstV1I	GCAGC	1 cut(s)	72
BstV2I	GAAGAC	1 cut(s)	159
BsuI	GTATCC	1 cut(s)	125
BsuRI	GGCC	1 cut(s)	306
BtsCI	GGATG	7 cut(s)	143, 178, 202, 227, 295, 324, 402
BtsIMutI	CAGTG	1 cut(s)	173
CseI	GACGC	1 cut(s)	112
CsiI	ACCWGGT	1 cut(s)	418
Csp6I	GTAC	4 cut(s)	49, 90, 190, 274
CspCI	CAANNNNNGTGG	2 cut(s)	201, 236
CviAII	CATG	2 cut(s)	10, 149
CviJI	RGCY	4 cut(s)	29, 63, 250, 306
CviKI_1	RGCY	4 cut(s)	29, 63, 250, 306
CviQI	GTAC	4 cut(s)	49, 90, 190, 274
DdeI	CTNAG	3 cut(s)	136, 270, 277
DpnI	GATC	2 cut(s)	226, 310
DpnII	GATC	2 cut(s)	224, 308
Eco57I	CTGAAG	1 cut(s)	45
EcoRII	CCWGG	3 cut(s)	312, 353, 418
EcoT22I	ATGCAT	1 cut(s)	402
FaeI	CATG	2 cut(s)	13, 152
FaiI	YATR	5 cut(s)	11, 150, 209, 461, 476
FaqI	GGGAC	1 cut(s)	452
FatI	CATG	2 cut(s)	9, 148
Fnu4HI	GCNGC	1 cut(s)	61
FokI	GGATG	7 cut(s)	130, 185, 209, 214, 302, 331, 409
Fsp4HI	GCNGC	1 cut(s)	61
GluI	GCNGC	1 cut(s)	61
GsuI	CTGGAG	1 cut(s)	376
HaeIII	GGCC	1 cut(s)	306
HapII	CCGG	2 cut(s)	365, 435
HgaI	GACGC	1 cut(s)	112
Hin1II	CATG	2 cut(s)	13, 152
HinfI	GANTC	3 cut(s)	5, 140, 371
HpaII	CCGG	2 cut(s)	365, 435
HphI	GGTGA	1 cut(s)	343
Hpy166II	GTNNAC	1 cut(s)	295
Hpy188I	TCNGA	2 cut(s)	56, 139
Hpy8I	GTNNAC	1 cut(s)	295
Hpy99I	CGWCG	1 cut(s)	56
HpyCH4III	ACNGT	1 cut(s)	89
HpyCH4IV	ACGT	1 cut(s)	51
HpyCH4V	TGCA	2 cut(s)	100, 400
HpyF3I	CTNAG	3 cut(s)	136, 270, 277
HpySE526I	ACGT	1 cut(s)	51
Hsp92II	CATG	2 cut(s)	13, 152
Kzo9I	GATC	2 cut(s)	224, 308
Lsp1109I	GCAGC	1 cut(s)	72
LweI	GCATC	3 cut(s)	87, 163, 387
MabI	ACCWGGT	1 cut(s)	418
MaeII	ACGT	1 cut(s)	51
MalI	GATC	2 cut(s)	226, 310
MboI	GATC	2 cut(s)	224, 308
MboII	GAAGA	3 cut(s)	164, 334, 366
MfeI	CAATTG	1 cut(s)	482
MluCI	AATT	5 cut(s)	18, 254, 264, 482, 490
MlyI	GAGTC	1 cut(s)	134
MmeI	TCCRAC	2 cut(s)	34, 255
MnlI	CCTC	3 cut(s)	50, 279, 387
Mph1103I	ATGCAT	1 cut(s)	402
MseI	TTAA	2 cut(s)	203, 261
MslI	CAYNNNNRTG	1 cut(s)	405
MspA1I	CMGCKG	1 cut(s)	287
MspI	CCGG	2 cut(s)	365, 435
MspR9I	CCNGG	4 cut(s)	314, 355, 420, 436
MunI	CAATTG	1 cut(s)	482
MvaI	CCWGG	3 cut(s)	314, 355, 420
NciI	CCSGG	1 cut(s)	436
NdeII	GATC	2 cut(s)	224, 308
NlaIII	CATG	2 cut(s)	13, 152
NsiI	ATGCAT	1 cut(s)	402
PasI	CCCWGGG	1 cut(s)	313
PfeI	GAWTC	2 cut(s)	5, 371
PkrI	GCNGC	1 cut(s)	62
PleI	GAGTC	1 cut(s)	134
PpsI	GAGTC	1 cut(s)	134
Psp6I	CCWGG	3 cut(s)	312, 353, 418
PspGI	CCWGG	3 cut(s)	312, 353, 418
PstI	CTGCAG	1 cut(s)	102
RsaI	GTAC	4 cut(s)	50, 91, 191, 275
RsaNI	GTAC	4 cut(s)	49, 90, 190, 274
RseI	CAYNNNNRTG	1 cut(s)	405
SaqAI	TTAA	2 cut(s)	203, 261
SatI	GCNGC	1 cut(s)	61
Sau3AI	GATC	2 cut(s)	224, 308
ScaI	AGTACT	3 cut(s)	91, 191, 275
SchI	GAGTC	1 cut(s)	134
ScrFI	CCNGG	4 cut(s)	314, 355, 420, 436
SetI	ASST	7 cut(s)	44, 54, 252, 300, 356, 390, 424
SexAI	ACCWGGT	1 cut(s)	418
SfaNI	GCATC	3 cut(s)	87, 163, 387
SfcI	CTRYAG	1 cut(s)	98
SmiMI	CAYNNNNRTG	1 cut(s)	405
SmlI	CTYRAG	1 cut(s)	68
SmoI	CTYRAG	1 cut(s)	68
Sse9I	AATT	5 cut(s)	18, 254, 264, 482, 490
SsiI	CCGC	2 cut(s)	163, 287
StyD4I	CCNGG	4 cut(s)	312, 353, 418, 434
TaaI	ACNGT	1 cut(s)	89
TaiI	ACGT	1 cut(s)	54
TaqI	TCGA	1 cut(s)	81
TasI	AATT	5 cut(s)	18, 254, 264, 482, 490
TatI	WGTACW	3 cut(s)	89, 189, 273
TfiI	GAWTC	2 cut(s)	5, 371
Tru1I	TTAA	2 cut(s)	203, 261
Tru9I	TTAA	2 cut(s)	203, 261
TscAI	CASTG	1 cut(s)	173
TseI	GCWGC	1 cut(s)	60
TspDTI	ATGAA	3 cut(s)	165, 335, 366
TspRI	CASTG	1 cut(s)	173
XapI	RAATTY	2 cut(s)	254, 264
ZrmI	AGTACT	3 cut(s)	91, 191, 275
Zsp2I	ATGCAT	1 cut(s)	402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.