Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0006114

Physical Location & Seq

Genomic Coordinates Forward (+)

1263983 .. 1264454

Gene Structure 472 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g02110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGGCGGAGGGCGGTAGCGAGACCGCCACCGGAGCTAAACCTAAACGTAAACCGATCGTATGGCTGGGGATCTTCCTCATCTCCCACAGCTTCTTGTTCAGTGGCGGTCGTTTTTCTCTTTTGTCAGTGTCGTTTTCTCCGCCGCCGGGGTGGTGGCGCTCTTGCTGCTTCCGGTTCTCGCCAAGAACACTTATATTTCCGAGAATGCCCTCATGCCTGGCTCCGTGGCGTCTATGCTTTCGAATCAGGAGGTTGCAGAGGCGAATAGATTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003923 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0005887 GO:0006464 GO:0006497 GO:0006505 GO:0006506 GO:0006629 GO:0006643 GO:0006644 GO:0006650 GO:0006661 GO:0006664 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009059 GO:0009247 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016255 GO:0016787 GO:0019538 GO:0019637 GO:0030176 GO:0031224 GO:0031226 GO:0031227 GO:0031984 GO:0032991 GO:0034645 GO:0036211 GO:0042157 GO:0042158 GO:0042175 GO:0042765 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0045017 GO:0046467 GO:0046474 GO:0046486 GO:0046488 GO:0071704 GO:0071944 GO:0090407 GO:0098796 GO:0098827 GO:0140096 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00563 ko01100 map00563 map01100

Pfam Domains

Protein Families

Gaa1

Protein Analysis

92

Amino Acids

10.56

Weight (kDa)

11.71

Isoelectric Point (pI)

70.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006114)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19130 AT5G19130
fragaria_vesca	FvH4_6g51172 FvH4_6g51190 FvH4_6g51190 FvH4_6g51190
malus_domestica	MD09G1027000.v1.1 MD17G1027000.v1.1
prunus_persica	Prupe.3G291700_v2.0.a1 Prupe.3G291700_v2.0.a1 Prupe.3G291700_v2.0.a1 Prupe.3G291700_v2.0.a1 Prupe.3G291700_v2.0.a1
pyrus_communis	pycom111g02110 pycom17g02210
rosa_chinensis	RchiOBHm_Chr2g0172791
rosa_laevigata	RLG00000022137
rosa_multiflora	Rmu_sc0002979.1_g000012 Rmu_sc0010744.1_g000001 Rmu_sc0027475.1_g000001
rosa_roxburghii	Rroxscaffold_2G00079510
rosa_rugosa	Rorug02G0561700
rosa_samantha	Rh2AG639400 Rh2BG652800 Rh2CG618600 Rh2DG666500
rosa_wichuraiana	Rw2G052780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	6 cut(s)	5, 12, 24, 105, 140, 143
AclWI	GGATC	1 cut(s)	77
AcyI	GRCGYC	1 cut(s)	229
AfiI	CCNNNNNNNGG	1 cut(s)	146
AjnI	CCWGG	1 cut(s)	216
AluBI	AGCT	2 cut(s)	35, 90
AluI	AGCT	2 cut(s)	35, 90
Alw26I	GTCTC	1 cut(s)	14
AlwI	GGATC	1 cut(s)	77
ApeKI	GCWGC	1 cut(s)	165
AspLEI	GCGC	1 cut(s)	159
AsuC2I	CCSGG	1 cut(s)	147
AsuII	TTCGAA	1 cut(s)	241
BbvI	GCAGC	1 cut(s)	152
BciT130I	CCWGG	1 cut(s)	218
BcnI	CCSGG	1 cut(s)	147
BcoDI	GTCTC	1 cut(s)	14
BfoI	RGCGCY	1 cut(s)	160
BisI	GCNGC	2 cut(s)	143, 166
BlsI	GCNGC	2 cut(s)	144, 167
Bme1390I	CCNGG	2 cut(s)	147, 218
BmiI	GGNNCC	1 cut(s)	222
BmrFI	CCNGG	2 cut(s)	147, 218
Bpu14I	TTCGAA	1 cut(s)	241
BpuMI	CCSGG	1 cut(s)	147
BsaHI	GRCGYC	1 cut(s)	229
BsaI	GGTCTC	1 cut(s)	14
BsaJI	CCNNGG	2 cut(s)	146, 224
BsaWI	WCCGGW	2 cut(s)	29, 171
Bsc4I	CCNNNNNNNGG	1 cut(s)	146
BseBI	CCWGG	1 cut(s)	218
BseDI	CCNNGG	2 cut(s)	146, 224
BseLI	CCNNNNNNNGG	1 cut(s)	146
BseXI	GCAGC	1 cut(s)	152
BseYI	CCCAGC	1 cut(s)	64
Bsh1285I	CGRYCG	2 cut(s)	57, 109
BsiEI	CGRYCG	2 cut(s)	57, 109
BsiSI	CCGG	3 cut(s)	30, 146, 172
BslI	CCNNNNNNNGG	1 cut(s)	146
BsmAI	GTCTC	1 cut(s)	14
BsmI	GAATGC	1 cut(s)	210
Bso31I	GGTCTC	1 cut(s)	14
Bsp119I	TTCGAA	1 cut(s)	241
Bsp143I	GATC	2 cut(s)	54, 69
BspACI	CCGC	6 cut(s)	5, 12, 24, 105, 140, 143
BspLI	GGNNCC	1 cut(s)	222
BspPI	GGATC	1 cut(s)	77
BspT104I	TTCGAA	1 cut(s)	241
BspTNI	GGTCTC	1 cut(s)	14
BssECI	CCNNGG	2 cut(s)	146, 224
BssMI	GATC	2 cut(s)	54, 69
BssNI	GRCGYC	1 cut(s)	229
Bst2UI	CCWGG	1 cut(s)	218
BstACI	GRCGYC	1 cut(s)	229
BstBI	TTCGAA	1 cut(s)	241
BstDSI	CCRYGG	1 cut(s)	224
BstH2I	RGCGCY	1 cut(s)	160
BstHHI	GCGC	1 cut(s)	159
BstKTI	GATC	2 cut(s)	57, 72
BstMAI	GTCTC	1 cut(s)	14
BstMBI	GATC	2 cut(s)	54, 69
BstMCI	CGRYCG	2 cut(s)	57, 109
BstMWI	GCNNNNNNNGC	2 cut(s)	32, 165
BstNI	CCWGG	1 cut(s)	218
BstSCI	CCNGG	2 cut(s)	145, 216
BstV1I	GCAGC	1 cut(s)	152
BstX2I	RGATCY	1 cut(s)	69
BstYI	RGATCY	1 cut(s)	69
BtgI	CCRYGG	1 cut(s)	224
BtsIMutI	CAGTG	2 cut(s)	106, 132
CfoI	GCGC	1 cut(s)	159
CseI	GACGC	1 cut(s)	218
CviAII	CATG	1 cut(s)	213
CviJI	RGCY	4 cut(s)	35, 64, 90, 221
CviKI_1	RGCY	4 cut(s)	35, 64, 90, 221
DpnI	GATC	2 cut(s)	56, 71
DpnII	GATC	2 cut(s)	54, 69
EciI	GGCGGA	2 cut(s)	20, 129
Eco31I	GGTCTC	1 cut(s)	14
EcoRII	CCWGG	1 cut(s)	216
FaeI	CATG	1 cut(s)	216
FaiI	YATR	4 cut(s)	61, 194, 214, 235
FatI	CATG	1 cut(s)	212
Fnu4HI	GCNGC	2 cut(s)	143, 166
Fsp4HI	GCNGC	2 cut(s)	143, 166
GlaI	GCGC	1 cut(s)	158
GluI	GCNGC	2 cut(s)	143, 166
GsaI	CCCAGC	1 cut(s)	68
HaeII	RGCGCY	1 cut(s)	160
HapII	CCGG	3 cut(s)	30, 146, 172
HgaI	GACGC	1 cut(s)	218
HhaI	GCGC	1 cut(s)	159
Hin1I	GRCGYC	1 cut(s)	229
Hin1II	CATG	1 cut(s)	216
Hin6I	GCGC	1 cut(s)	157
HinP1I	GCGC	1 cut(s)	157
HinfI	GANTC	1 cut(s)	243
HpaII	CCGG	3 cut(s)	30, 146, 172
Hpy166II	GTNNAC	1 cut(s)	50
Hpy188I	TCNGA	1 cut(s)	201
Hpy188III	TCNNGA	1 cut(s)	247
Hpy8I	GTNNAC	1 cut(s)	50
HpyCH4IV	ACGT	1 cut(s)	46
HpyCH4V	TGCA	1 cut(s)	256
HpyF10VI	GCNNNNNNNGC	2 cut(s)	32, 165
HpySE526I	ACGT	1 cut(s)	46
Hsp92I	GRCGYC	1 cut(s)	229
Hsp92II	CATG	1 cut(s)	216
HspAI	GCGC	1 cut(s)	157
Kzo9I	GATC	2 cut(s)	54, 69
LmnI	GCTCC	2 cut(s)	32, 226
LpnPI	CCDG	7 cut(s)	43, 50, 159, 185, 203, 230, 232
Lsp1109I	GCAGC	1 cut(s)	152
MaeII	ACGT	1 cut(s)	46
MalI	GATC	2 cut(s)	56, 71
MboI	GATC	2 cut(s)	54, 69
MboII	GAAGA	1 cut(s)	64
MflI	RGATCY	1 cut(s)	69
MnlI	CCTC	4 cut(s)	86, 220, 243, 252
MspI	CCGG	3 cut(s)	30, 146, 172
MspR9I	CCNGG	2 cut(s)	147, 218
Mva1269I	GAATGC	1 cut(s)	210
MvaI	CCWGG	1 cut(s)	218
MwoI	GCNNNNNNNGC	2 cut(s)	32, 165
NciI	CCSGG	1 cut(s)	147
NdeII	GATC	2 cut(s)	54, 69
NlaIII	CATG	1 cut(s)	216
NlaIV	GGNNCC	1 cut(s)	222
NspV	TTCGAA	1 cut(s)	241
PctI	GAATGC	1 cut(s)	210
PfeI	GAWTC	1 cut(s)	243
PkrI	GCNGC	2 cut(s)	144, 167
Ple19I	CGATCG	1 cut(s)	57
Psp6I	CCWGG	1 cut(s)	216
PspFI	CCCAGC	1 cut(s)	64
PspGI	CCWGG	1 cut(s)	216
PspN4I	GGNNCC	1 cut(s)	222
PsuI	RGATCY	1 cut(s)	69
PvuI	CGATCG	1 cut(s)	57
SatI	GCNGC	2 cut(s)	143, 166
Sau3AI	GATC	2 cut(s)	54, 69
ScrFI	CCNGG	2 cut(s)	147, 218
SetI	ASST	5 cut(s)	37, 43, 49, 92, 254
SfuI	TTCGAA	1 cut(s)	241
SsiI	CCGC	6 cut(s)	5, 12, 24, 105, 140, 143
StyD4I	CCNGG	2 cut(s)	145, 216
TaiI	ACGT	1 cut(s)	49
TaqI	TCGA	1 cut(s)	241
TauI	GCSGC	1 cut(s)	145
TfiI	GAWTC	1 cut(s)	243
TscAI	CASTG	2 cut(s)	106, 132
TseI	GCWGC	1 cut(s)	165
TspGWI	ACGGA	1 cut(s)	213
TspRI	CASTG	2 cut(s)	106, 132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.