Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010744.1

Orthogroup ID

OG0006114

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1235

Gene Structure 1234 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010744.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 581 bp

atgtttacgagcccaaaacccgaaactaccaatttactcccgggtttcgcctccgagctccactacttcgtctttcagtcattcctgactttcccaaaacaaacacagacaactgagacaaacttccactcaccgctaaaccaaaaccttccgagcatcccattcattccggcagccatggccggcgccgagaccgacacctccaaggccaaaccacgacccatcgtacgcctcgggatcttcctcatctctcatagcttcttcttcagtgtcgtcttctccgccgccggcgttttggctcttctgctgcttccggttctcgccaagaacacttacatctccgagaattcgcttatgccaggctctgtggctcccatgctttccgatcaggaggttgcggaggccaatagattgatagacgatttgactgctttgaattccaagcctcttggttcagtaataggaagtcgaagactggtagcacagtatatgtcaaattcaggcgctgaagttagttttcacaagttccaccctcagataaatcagtttcacccgctgcacttcttttctagccctgattc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003923 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0005887 GO:0006464 GO:0006497 GO:0006505 GO:0006506 GO:0006629 GO:0006643 GO:0006644 GO:0006650 GO:0006661 GO:0006664 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009059 GO:0009247 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016255 GO:0016787 GO:0019538 GO:0019637 GO:0030176 GO:0031224 GO:0031226 GO:0031227 GO:0031984 GO:0032991 GO:0034645 GO:0036211 GO:0042157 GO:0042158 GO:0042175 GO:0042765 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0045017 GO:0046467 GO:0046474 GO:0046486 GO:0046488 GO:0071704 GO:0071944 GO:0090407 GO:0098796 GO:0098827 GO:0140096 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00563 ko01100 map00563 map01100

Pfam Domains

Protein Families

Gaa1

Protein Analysis

194

Amino Acids

21.28

Weight (kDa)

6.64

Isoelectric Point (pI)

42.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006114)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19130 AT5G19130
fragaria_vesca	FvH4_6g51172 FvH4_6g51190 FvH4_6g51190 FvH4_6g51190
malus_domestica	MD09G1027000.v1.1 MD17G1027000.v1.1
prunus_persica	Prupe.3G291700_v2.0.a1 Prupe.3G291700_v2.0.a1 Prupe.3G291700_v2.0.a1 Prupe.3G291700_v2.0.a1 Prupe.3G291700_v2.0.a1
pyrus_communis	pycom111g02110 pycom17g02210
rosa_chinensis	RchiOBHm_Chr2g0172791
rosa_laevigata	RLG00000022137
rosa_multiflora	Rmu_sc0002979.1_g000012 Rmu_sc0010744.1_g000001 Rmu_sc0027475.1_g000001
rosa_roxburghii	Rroxscaffold_2G00079510
rosa_rugosa	Rorug02G0561700
rosa_samantha	Rh2AG639400 Rh2BG652800 Rh2CG618600 Rh2DG666500
rosa_wichuraiana	Rw2G052780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	185
AciI	CCGC	5 cut(s)	134, 282, 285, 398, 554
AclWI	GGATC	1 cut(s)	245
AcoI	YGGCCR	1 cut(s)	180
AcsI	RAATTY	3 cut(s)	346, 436, 496
AcuI	CTGAAG	2 cut(s)	250, 528
AcyI	GRCGYC	1 cut(s)	186
AfaI	GTAC	1 cut(s)	228
AgsI	TTSAA	1 cut(s)	436
AjnI	CCWGG	1 cut(s)	358
AluBI	AGCT	2 cut(s)	58, 258
AluI	AGCT	2 cut(s)	58, 258
Alw21I	GWGCWC	1 cut(s)	60
Alw26I	GTCTC	2 cut(s)	110, 185
AlwI	GGATC	1 cut(s)	245
AlwNI	CAGNNNCTG	2 cut(s)	365, 506
Ama87I	CYCGRG	2 cut(s)	40, 233
AoxI	GGCC	3 cut(s)	180, 207, 402
ApeKI	GCWGC	3 cut(s)	173, 307, 556
ApoI	RAATTY	3 cut(s)	346, 436, 496
AspLEI	GCGC	2 cut(s)	188, 506
AsuC2I	CCSGG	2 cut(s)	41, 42
AsuHPI	GGTGA	2 cut(s)	123, 542
AvaI	CYCGRG	2 cut(s)	40, 233
BanI	GGYRCC	1 cut(s)	185
BanII	GRGCYC	2 cut(s)	14, 60
BbsI	GAAGAC	2 cut(s)	268, 478
Bbv12I	GWGCWC	1 cut(s)	60
BbvI	GCAGC	3 cut(s)	185, 294, 543
BccI	CCATC	1 cut(s)	230
BcgI	CGANNNNNNTGC	2 cut(s)	410, 444
BciT130I	CCWGG	1 cut(s)	360
BcnI	CCSGG	2 cut(s)	41, 42
BcoDI	GTCTC	2 cut(s)	110, 185
BfaI	CTAG	1 cut(s)	570
BfoI	RGCGCY	2 cut(s)	189, 507
BisI	GCNGC	4 cut(s)	174, 285, 308, 557
BlsI	GCNGC	4 cut(s)	175, 286, 309, 558
Bme1390I	CCNGG	3 cut(s)	41, 42, 360
BmeT110I	CYCGRG	2 cut(s)	40, 233
BmiI	GGNNCC	2 cut(s)	187, 372
BmrFI	CCNGG	3 cut(s)	41, 42, 360
BmsI	GCATC	1 cut(s)	165
BpiI	GAAGAC	2 cut(s)	268, 478
BpuMI	CCSGG	2 cut(s)	41, 42
BsaHI	GRCGYC	1 cut(s)	186
BsaI	GGTCTC	1 cut(s)	185
BsaJI	CCNNGG	4 cut(s)	40, 177, 204, 232
BsaWI	WCCGGW	1 cut(s)	313
Bse118I	RCCGGY	2 cut(s)	182, 287
Bse1I	ACTGG	1 cut(s)	480
BseBI	CCWGG	1 cut(s)	360
BseDI	CCNNGG	4 cut(s)	40, 177, 204, 232
BseGI	GGATG	1 cut(s)	156
BseMII	CTCAG	2 cut(s)	105, 548
BseNI	ACTGG	1 cut(s)	480
BseXI	GCAGC	3 cut(s)	185, 294, 543
BsgI	GTGCAG	1 cut(s)	542
BshFI	GGCC	3 cut(s)	182, 209, 404
BshNI	GGYRCC	1 cut(s)	185
BsiHKAI	GWGCWC	1 cut(s)	60
BsiHKCI	CYCGRG	2 cut(s)	40, 233
BsiSI	CCGG	5 cut(s)	41, 170, 183, 288, 314
BsiWI	CGTACG	1 cut(s)	226
BsmAI	GTCTC	2 cut(s)	110, 185
BsnI	GGCC	3 cut(s)	182, 209, 404
Bso31I	GGTCTC	1 cut(s)	185
BsoBI	CYCGRG	2 cut(s)	40, 233
Bsp1286I	GDGCHC	2 cut(s)	14, 60
Bsp143I	GATC	2 cut(s)	237, 385
Bsp19I	CCATGG	1 cut(s)	177
BspACI	CCGC	5 cut(s)	134, 282, 285, 398, 554
BspANI	GGCC	3 cut(s)	182, 209, 404
BspCNI	CTCAG	2 cut(s)	106, 547
BspLI	GGNNCC	2 cut(s)	187, 372
BspPI	GGATC	1 cut(s)	245
BspQI	GCTCTTC	1 cut(s)	306
BspT107I	GGYRCC	1 cut(s)	185
BspTNI	GGTCTC	1 cut(s)	185
BsrFI	RCCGGY	2 cut(s)	182, 287
BsrI	ACTGG	1 cut(s)	480
BssAI	RCCGGY	2 cut(s)	182, 287
BssECI	CCNNGG	4 cut(s)	40, 177, 204, 232
BssMI	GATC	2 cut(s)	237, 385
BssNI	GRCGYC	1 cut(s)	186
BssT1I	CCWWGG	2 cut(s)	177, 204
Bst2UI	CCWGG	1 cut(s)	360
Bst4CI	ACNGT	1 cut(s)	486
Bst6I	CTCTTC	1 cut(s)	306
BstACI	GRCGYC	1 cut(s)	186
BstC8I	GCNNGC	2 cut(s)	184, 289
BstDEI	CTNAG	2 cut(s)	114, 534
BstDSI	CCRYGG	1 cut(s)	177
BstF5I	GGATG	1 cut(s)	156
BstH2I	RGCGCY	2 cut(s)	189, 507
BstHHI	GCGC	2 cut(s)	188, 506
BstKTI	GATC	2 cut(s)	240, 388
BstMAI	GTCTC	2 cut(s)	110, 185
BstMBI	GATC	2 cut(s)	237, 385
BstMWI	GCNNNNNNNGC	1 cut(s)	179
BstNI	CCWGG	1 cut(s)	360
BstSCI	CCNGG	3 cut(s)	39, 40, 358
BstV1I	GCAGC	3 cut(s)	185, 294, 543
BstV2I	GAAGAC	2 cut(s)	268, 478
BstX2I	RGATCY	1 cut(s)	237
BstYI	RGATCY	1 cut(s)	237
BsuRI	GGCC	3 cut(s)	182, 209, 404
BtgI	CCRYGG	1 cut(s)	177
BtsCI	GGATG	1 cut(s)	156
BtsIMutI	CAGTG	1 cut(s)	274
Cac8I	GCNNGC	2 cut(s)	184, 289
CaiI	CAGNNNCTG	2 cut(s)	365, 506
CfoI	GCGC	2 cut(s)	188, 506
Cfr10I	RCCGGY	2 cut(s)	182, 287
Cfr9I	CCCGGG	1 cut(s)	40
Csp6I	GTAC	1 cut(s)	227
CviAII	CATG	2 cut(s)	178, 376
CviQI	GTAC	1 cut(s)	227
DdeI	CTNAG	2 cut(s)	114, 534
DinI	GGCGCC	1 cut(s)	187
DpnI	GATC	2 cut(s)	239, 387
DpnII	GATC	2 cut(s)	237, 385
EaeI	YGGCCR	1 cut(s)	180
Eam1104I	CTCTTC	1 cut(s)	306
EarI	CTCTTC	1 cut(s)	306
EciI	GGCGGA	1 cut(s)	271
Ecl136II	GAGCTC	1 cut(s)	58
Eco130I	CCWWGG	2 cut(s)	177, 204
Eco24I	GRGCYC	2 cut(s)	14, 60
Eco31I	GGTCTC	1 cut(s)	185
Eco53kI	GAGCTC	1 cut(s)	58
Eco57I	CTGAAG	2 cut(s)	250, 528
Eco88I	CYCGRG	2 cut(s)	40, 233
EcoICRI	GAGCTC	1 cut(s)	58
EcoRI	GAATTC	2 cut(s)	346, 436
EcoRII	CCWGG	1 cut(s)	358
EcoT14I	CCWWGG	2 cut(s)	177, 204
EcoT38I	GRGCYC	2 cut(s)	14, 60
EgeI	GGCGCC	1 cut(s)	187
EheI	GGCGCC	1 cut(s)	187
ErhI	CCWWGG	2 cut(s)	177, 204
FaeI	CATG	2 cut(s)	181, 379
FaiI	YATR	6 cut(s)	179, 255, 356, 377, 489, 491
FatI	CATG	2 cut(s)	177, 375
FauI	CCCGC	1 cut(s)	561
Fnu4HI	GCNGC	4 cut(s)	174, 285, 308, 557
FokI	GGATG	1 cut(s)	143
FriOI	GRGCYC	2 cut(s)	14, 60
Fsp4HI	GCNGC	4 cut(s)	174, 285, 308, 557
FspBI	CTAG	1 cut(s)	570
GlaI	GCGC	2 cut(s)	187, 505
GluI	GCNGC	4 cut(s)	174, 285, 308, 557
HaeII	RGCGCY	2 cut(s)	189, 507
HaeIII	GGCC	3 cut(s)	182, 209, 404
HapII	CCGG	5 cut(s)	41, 170, 183, 288, 314
HhaI	GCGC	2 cut(s)	188, 506
Hin1I	GRCGYC	1 cut(s)	186
Hin1II	CATG	2 cut(s)	181, 379
Hin6I	GCGC	2 cut(s)	186, 504
HinP1I	GCGC	2 cut(s)	186, 504
HinfI	GANTC	1 cut(s)	578
HpaII	CCGG	5 cut(s)	41, 170, 183, 288, 314
HphI	GGTGA	2 cut(s)	123, 542
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188I	TCNGA	5 cut(s)	55, 153, 343, 385, 537
Hpy188III	TCNNGA	3 cut(s)	85, 235, 389
Hpy8I	GTNNAC	1 cut(s)	6
HpyAV	CCTTC	1 cut(s)	158
HpyCH4III	ACNGT	1 cut(s)	486
HpyCH4V	TGCA	1 cut(s)	559
HpyF10VI	GCNNNNNNNGC	1 cut(s)	179
HpyF3I	CTNAG	2 cut(s)	114, 534
Hsp92I	GRCGYC	1 cut(s)	186
Hsp92II	CATG	2 cut(s)	181, 379
HspAI	GCGC	2 cut(s)	186, 504
KasI	GGCGCC	1 cut(s)	185
KroI	GCCGGC	2 cut(s)	182, 287
KroNI	GCCGGC	2 cut(s)	184, 289
Kzo9I	GATC	2 cut(s)	237, 385
LguI	GCTCTTC	1 cut(s)	306
LmnI	GCTCC	2 cut(s)	63, 376
Lsp1109I	GCAGC	3 cut(s)	185, 294, 543
LweI	GCATC	1 cut(s)	165
MaeI	CTAG	1 cut(s)	570
MalI	GATC	2 cut(s)	239, 387
MboI	GATC	2 cut(s)	237, 385
MboII	GAAGA	6 cut(s)	232, 253, 256, 268, 293, 483
MflI	RGATCY	1 cut(s)	237
MhlI	GDGCHC	2 cut(s)	14, 60
MluCI	AATT	4 cut(s)	31, 346, 436, 496
Mly113I	GGCGCC	1 cut(s)	186
MnlI	CCTC	8 cut(s)	61, 211, 242, 254, 385, 394, 456, 543
MreI	CGCCGGCG	1 cut(s)	287
MroNI	GCCGGC	2 cut(s)	182, 287
MspA1I	CMGCKG	1 cut(s)	556
MspI	CCGG	5 cut(s)	41, 170, 183, 288, 314
MspR9I	CCNGG	3 cut(s)	41, 42, 360
MvaI	CCWGG	1 cut(s)	360
MwoI	GCNNNNNNNGC	1 cut(s)	179
NaeI	GCCGGC	2 cut(s)	184, 289
NarI	GGCGCC	1 cut(s)	186
NciI	CCSGG	2 cut(s)	41, 42
NcoI	CCATGG	1 cut(s)	177
NdeII	GATC	2 cut(s)	237, 385
NgoMIV	GCCGGC	2 cut(s)	182, 287
NlaIII	CATG	2 cut(s)	181, 379
NlaIV	GGNNCC	2 cut(s)	187, 372
NmeAIII	GCCGAG	1 cut(s)	214
PciSI	GCTCTTC	1 cut(s)	306
PdiI	GCCGGC	2 cut(s)	184, 289
PfeI	GAWTC	1 cut(s)	578
Pfl23II	CGTACG	1 cut(s)	226
PkrI	GCNGC	4 cut(s)	175, 286, 309, 558
PluTI	GGCGCC	1 cut(s)	189
Psp124BI	GAGCTC	1 cut(s)	60
Psp6I	CCWGG	1 cut(s)	358
PspGI	CCWGG	1 cut(s)	358
PspLI	CGTACG	1 cut(s)	226
PspN4I	GGNNCC	2 cut(s)	187, 372
PstNI	CAGNNNCTG	2 cut(s)	365, 506
PsuI	RGATCY	1 cut(s)	237
RsaI	GTAC	1 cut(s)	228
RsaNI	GTAC	1 cut(s)	227
SacI	GAGCTC	1 cut(s)	60
SapI	GCTCTTC	1 cut(s)	306
SatI	GCNGC	4 cut(s)	174, 285, 308, 557
Sau3AI	GATC	2 cut(s)	237, 385
ScrFI	CCNGG	3 cut(s)	41, 42, 360
SduI	GDGCHC	2 cut(s)	14, 60
SetI	ASST	5 cut(s)	60, 150, 203, 260, 396
SfaNI	GCATC	1 cut(s)	165
SfoI	GGCGCC	1 cut(s)	187
SgrAI	CRCCGGYG	1 cut(s)	287
SmaI	CCCGGG	1 cut(s)	42
Sse9I	AATT	4 cut(s)	31, 346, 436, 496
SsiI	CCGC	5 cut(s)	134, 282, 285, 398, 554
SspDI	GGCGCC	1 cut(s)	185
SspMI	CTAG	1 cut(s)	570
SstI	GAGCTC	1 cut(s)	60
StyD4I	CCNGG	3 cut(s)	39, 40, 358
StyI	CCWWGG	2 cut(s)	177, 204
TaaI	ACNGT	1 cut(s)	486
TaqI	TCGA	1 cut(s)	469
TaqII	GACCGA	1 cut(s)	209
TasI	AATT	4 cut(s)	31, 346, 436, 496
TauI	GCSGC	1 cut(s)	287
TfiI	GAWTC	1 cut(s)	578
TscAI	CASTG	1 cut(s)	274
TseI	GCWGC	3 cut(s)	173, 307, 556
TspDTI	ATGAA	1 cut(s)	154
TspMI	CCCGGG	1 cut(s)	40
TspRI	CASTG	1 cut(s)	274
XapI	RAATTY	3 cut(s)	346, 436, 496
XmaI	CCCGGG	1 cut(s)	40
XspI	CTAG	1 cut(s)	570

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.