pycom111g02640

Tetratricopeptide repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
SuperScaffold_111
OG0010792
Physical Location & Seq
Reverse (-)
1584515 .. 1586858
2344 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 2145 bp
ATGGATACGATGAATCGAAACGGCGAAGTAGATGAATCAAATGGAGATTATGCGCCTCAAAAGGAAAGCTACAGCCAGGGTTCTCCGAGAAGTACGTTGAGTCCTCAAAGTCCTCACAATGGCTCCATTGGTATGGCTATGAATGGCAGGATTGATACCTCTATTGAACAGTTATATCACAACATCTGCGAAATGCAGAGCTCGGACCAATCCCCTTCCCGGGCCAGCTTTGGATCGTTCGGTGAGGAATCGAGGATTGACTCCGAGCTAAACCACCTTGTCGGATATGCTCGAGAGGATTTGGAGATAAGGAAAGAGGTGGTTGTGGAAAACAAGGAGGATGGTGTTTGTGGTGACTCAACTCCCGAGAAAGCAAGTGTATCGGATGATAAAAGGTCTCCAACGAAAGTGAAGTCTCCATCTGCGAAAACAAGTCCGAAGAGCAAATCTACTAACGAGAAGCCCCCGCTGGATAAGAGGAATGGGAAGCATCCGAAAAAAGGCAATGTGATATTGTCTAAGAACAAGCATAGGAGTTTTGGTTTACGCGGTGGGGCGAGGTTTCAGAATGGAGTCGATGATCATCCTCCTGAGGCAGGGTTGAATAACCTTGACCTCGGGCCATATTTGCTCAAACAAACAAGGGATTTGATTTCTTCTGGCGAAAACCCCAAGAAAGCGCTCAAGTTAGCTCTCCGGGCAGTGGAATTGTTCGAGAAATGCACGAGTGAGAAGCCCAATTTAGAGCTGGTTATGTGTTTGCATGTTTTGGCAGCAATATATTGCAGCTTACGGAAGTACAATGAGGCGATTCCAGTTCTTGAGCGCGCCATTGACATTCCAGCGATAGAGGATGGCGATAACTATGCACTAGCCAAGTTTGCAGGGTGCATGCAATTAGGTGACATTTATGCAATGACCGGTCAGATTGAGAACTCAATATTATTTTATACAGCAGGTATGGAAATTCAAAGGCAAGTCTTGGGAGAAAAGGACCCGCGATTGGGTGAGACATGTCGGTATGTAGCAGAGGCGCATGTTCAAGCATTGCAATTCAACGAGGCTGAGAAGCTCTGTCAGATGGCGCTCGAAATCCACAGGGAGAATGGTTCTGCTTCCCTCGAGGAAGCGGCAGATAGAAGACTCATGGGACTAATCTGTGACTCGAAAGGAGATTTCGAAGCCGCTCTTGAGCATTATGTTTTGGCAAACATGTCAATGTCTGCCAATGATCAGGAAGCGGATGCAGCTTCGATAAATTGCAGCATTGGTGACGCGTACCTATCCTTGGCACGGTATGATGAGGCAGTGTTTTCTTACCAGAAGGCCCTCACTGTGTTTAAGACAACGAAAGGAGAGACTCATCCGGCAGTAGCTTCTGTTTATGTTCGTTTAGCTGACTTGTACAACAAGATAGGAAAGTTTAAGGAGTCCAAATCATACTGTGAAAATGCACATCGAATTTATGGGAAACCTAATCCCGGAATCCCTTCAGAAGAGATTGCCGGAGGTCTCATTCATGTTTCTGCAATCTATCAATCCATGAATGATCTGGAACAGGCCCTGAAGTTGCTCAAGAAGGCTTTGAAAATATTCGGTGATGCTCCAGGCCACCAGAGCACAAGTGCAGGAATTGAGGCTCAGATGGGGGTAATGTACTATATGATGGGAAATTTTACTGACTCTTACAACACATTCAAGAGTTCCATAACCAAGTTCCGTGCCACTGGAGAAAAGAAATCGGCGTTGTTTGGGATTGCTCTCAACCAAATGGGGCTAGCCTGCATTCAGCGTTACTTGATCAACGAGGCTGCAGACCTGTTTGAAGAAGCCAGGAACATCTTGGAGAAGGAGTATGGACCTTATCACCCTGACACATTAGGGGTTTATAGTAATTTGGCTGGCACATATGATGCAATGGGCAGGTTGGATGCCGCCATTGAGATTCTGGAGTATGTTGTTGGCATGAGAGAGGAGAAGCTGGGAACAGCAAATCCGGATGTGGCGGACGAGAAGCGGAGGTTGTCCGAGTTGTTGAAAGAAGCCGGCAGGGCTCGGAACAGGAAAACCAGATCACTGGAGACACTTCTCGACGCCAACAACCCCGCACAGATTATTAAACAAGACATCATCGAGGTATCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000902 GO:0000904 GO:0001655 GO:0001822 GO:0001889 GO:0001894 GO:0001895 GO:0001947 GO:0002009 GO:0003006 GO:0003007 GO:0003143 GO:0003205 GO:0003230 GO:0003279 GO:0003283 GO:0003341 GO:0003351 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005929 GO:0006928 GO:0006996 GO:0007017 GO:0007018 GO:0007275 GO:0007368 GO:0007369 GO:0007389 GO:0007507 GO:0008150 GO:0009653 GO:0009790 GO:0009799 GO:0009826 GO:0009855 GO:0009856 GO:0009860 GO:0009887 GO:0009888 GO:0009932 GO:0009966 GO:0009968 GO:0009987 GO:0010646 GO:0010648 GO:0016020 GO:0016043 GO:0016049 GO:0022414 GO:0022603 GO:0022607 GO:0023051 GO:0023057 GO:0030030 GO:0030031 GO:0030111 GO:0030154 GO:0030178 GO:0030323 GO:0030324 GO:0031016 GO:0031347 GO:0032501 GO:0032502 GO:0032989 GO:0035050 GO:0035239 GO:0035295 GO:0035469 GO:0040007 GO:0042592 GO:0042995 GO:0043226 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0044782 GO:0045494 GO:0045595 GO:0045596 GO:0045995 GO:0048468 GO:0048496 GO:0048513 GO:0048519 GO:0048523 GO:0048562 GO:0048565 GO:0048568 GO:0048583 GO:0048585 GO:0048588 GO:0048589 GO:0048598 GO:0048729 GO:0048731 GO:0048732 GO:0048856 GO:0048868 GO:0048869 GO:0048871 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051239 GO:0051704 GO:0051960 GO:0055123 GO:0060026 GO:0060027 GO:0060249 GO:0060271 GO:0060287 GO:0060429 GO:0060541 GO:0060560 GO:0060562 GO:0060828 GO:0060993 GO:0061008 GO:0061371 GO:0065007 GO:0065008 GO:0070925 GO:0071840 GO:0071907 GO:0071908 GO:0071909 GO:0071910 GO:0071944 GO:0072001 GO:0072189 GO:0072359 GO:0080134 GO:0090090 GO:0090175 GO:0090178 GO:0120025 GO:0120031 GO:0120036 GO:1905276 GO:1905330 GO:2000026 GO:2000027 GO:2000050 GO:2000095 GO:2000167
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_10 TPR_12 TPR_7 TPR_8

Protein Analysis

715

Amino Acids

78.76

Weight (kDa)

5.64

Isoelectric Point (pI)

43.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_12 PF13424 342 - 400 2.4e-06 Tetratricopeptide repeat
TPR_MalT PF17874 347 - 494 5.8e-09 MalT-like TPR region
TPR_NPHP3 PF24885 407 - 541 9.2e-10 Nephrocystin-3 TPR domain
TPR_12 PF13424 416 - 489 1.1e-09 Tetratricopeptide repeat
TPR_12 PF13424 458 - 532 5.2e-08 Tetratricopeptide repeat
TPR_12 PF13424 586 - 656 5.3e-11 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010792)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G27960 AT3G27960 AT3G27960
fragaria_vesca FvH4_6g50730
malus_domestica MD09G1033100.v1.1 MD17G1034400.v1.1
prunus_persica Prupe.3G285200_v2.0.a1 Prupe.3G285200_v2.0.a1
pyrus_communis pycom111g02640 pycom17g03180
rosa_chinensis RchiOBHm_Chr2g0171671
rosa_laevigata RLG00000022027
rosa_multiflora Rmu_ssc0000252.1_g000009
rosa_roxburghii Rroxscaffold_2G00080540
rosa_rugosa Rorug02G0555200
rosa_samantha Rh2AG630200 Rh2BG640700 Rh2BG643200 Rh2CG609000
rosa_wichuraiana Rw2G052150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 1121
Acc36I ACCTGC 2 cut(s) 947, 1914
AccBSI CCGCTC 1 cut(s) 1187
AccII CGCG 4 cut(s) 549, 828, 1000, 1277
AccIII TCCGGA 1 cut(s) 1996
AclWI GGATC 1 cut(s) 241
AcsI RAATTY 3 cut(s) 966, 1461, 1672
AcuI CTGAAG 2 cut(s) 1476, 1586
AcyI GRCGYC 1 cut(s) 2094
AfaI GTAC 5 cut(s) 94, 800, 1280, 1406, 1658
AfeI AGCGCT 1 cut(s) 681
AflIII ACRYGT 3 cut(s) 1013, 1212, 1275
AgeI ACCGGT 1 cut(s) 920
AgsI TTSAA 9 cut(s) 167, 604, 971, 1043, 1057, 1588, 1699, 1826, 2038
AjnI CCWGG 3 cut(s) 75, 1606, 1832
AloI GAACNNNNNNTCC 2 cut(s) 1978, 2010
Alw21I GWGCWC 2 cut(s) 203, 1622
Alw26I GTCTC 6 cut(s) 402, 420, 1004, 1352, 1517, 2075
AlwI GGATC 1 cut(s) 241
AlwNI CAGNNNCTG 1 cut(s) 1564
Ama87I CYCGRG 5 cut(s) 219, 291, 365, 617, 1121
Aor13HI TCCGGA 1 cut(s) 1996
Aor51HI AGCGCT 1 cut(s) 681
AoxI GGCC 5 cut(s) 222, 620, 1326, 1560, 1609
ApeKI GCWGC 5 cut(s) 773, 786, 1247, 1263, 1811
ApoI RAATTY 3 cut(s) 966, 1461, 1672
ArsI GACNNNNNNTTYG 2 cut(s) 398, 430
AsiGI ACCGGT 1 cut(s) 920
Asp700I GAANNNNTTC 2 cut(s) 1489, 1592
AspLEI GCGC 6 cut(s) 55, 682, 828, 830, 1036, 1087
AspS9I GGNCC 7 cut(s) 205, 222, 620, 994, 1327, 1561, 1859
AsuC2I CCSGG 4 cut(s) 220, 221, 698, 1482
AsuHPI GGTGA 7 cut(s) 254, 365, 914, 1019, 1283, 1610, 1859
AsuII TTCGAA 1 cut(s) 1179
AsuNHI GCTAGC 1 cut(s) 1777
AvaI CYCGRG 5 cut(s) 219, 291, 365, 617, 1121
AvaII GGWCC 3 cut(s) 205, 994, 1859
AxyI CCTNAGG 1 cut(s) 591
BanII GRGCYC 2 cut(s) 203, 2056
BauI CACGAG 1 cut(s) 724
BbsI GAAGAC 1 cut(s) 1147
Bbv12I GWGCWC 2 cut(s) 203, 1622
BbvI GCAGC 5 cut(s) 785, 798, 1259, 1275, 1798
BccI CCATC 6 cut(s) 335, 427, 848, 1075, 1639, 1660
BceAI ACGGC 1 cut(s) 37
BcgI CGANNNNNNTGC 4 cut(s) 363, 397, 848, 882
BciT130I CCWGG 3 cut(s) 77, 1608, 1834
BclI TGATCA 3 cut(s) 580, 1231, 1800
BcnI CCSGG 4 cut(s) 220, 221, 698, 1482
BcoDI GTCTC 6 cut(s) 402, 420, 1004, 1352, 1517, 2075
BfaI CTAG 2 cut(s) 872, 1778
BfmI CTRYAG 2 cut(s) 70, 1812
BfoI RGCGCY 2 cut(s) 683, 1088
BfuAI ACCTGC 2 cut(s) 947, 1914
BglI GCCNNNNNGGC 1 cut(s) 2051
BisI GCNGC 8 cut(s) 774, 787, 1131, 1185, 1248, 1264, 1812, 1935
BlsI GCNGC 8 cut(s) 775, 788, 1132, 1186, 1249, 1265, 1813, 1936
Bme1390I CCNGG 7 cut(s) 77, 220, 221, 698, 1482, 1608, 1834
Bme18I GGWCC 3 cut(s) 205, 994, 1859
BmeT110I CYCGRG 5 cut(s) 219, 291, 365, 617, 1121
BmgT120I GGNCC 7 cut(s) 205, 222, 620, 994, 1327, 1561, 1859
BmiI GGNNCC 2 cut(s) 124, 996
BmrFI CCNGG 7 cut(s) 77, 220, 221, 698, 1482, 1608, 1834
BmsI GCATC 5 cut(s) 499, 1234, 1591, 1903, 1921
BmtI GCTAGC 1 cut(s) 1781
BpiI GAAGAC 1 cut(s) 1147
BpmI CTGGAG 4 cut(s) 1590, 1749, 1970, 2099
Bpu14I TTCGAA 1 cut(s) 1179
BpuEI CTTGAG 4 cut(s) 668, 842, 1211, 1559
BpuMI CCSGG 4 cut(s) 220, 221, 698, 1482
BsaBI GATNNNNATC 1 cut(s) 582
BsaHI GRCGYC 1 cut(s) 2094
BsaI GGTCTC 2 cut(s) 402, 1517
BsaJI CCNNGG 4 cut(s) 76, 219, 616, 1287
BsaWI WCCGGW 2 cut(s) 920, 1996
BsaXI ACNNNNNCTCC 6 cut(s) 107, 137, 526, 556, 1838, 1868
Bse118I RCCGGY 2 cut(s) 920, 2045
Bse1I ACTGG 3 cut(s) 815, 1732, 2082
Bse21I CCTNAGG 1 cut(s) 591
Bse3DI GCAATG 4 cut(s) 511, 921, 1046, 1923
Bse8I GATNNNNATC 1 cut(s) 582
BseAI TCCGGA 1 cut(s) 1996
BseBI CCWGG 3 cut(s) 77, 1608, 1834
BseDI CCNNGG 4 cut(s) 76, 219, 616, 1287
BseGI GGATG 9 cut(s) 346, 391, 490, 583, 859, 1249, 1363, 1936, 2005
BseJI GATNNNNATC 1 cut(s) 582
BseMI GCAATG 4 cut(s) 511, 921, 1046, 1923
BseMII CTCAG 3 cut(s) 582, 1056, 1655
BseNI ACTGG 3 cut(s) 815, 1732, 2082
BsePI GCGCGC 1 cut(s) 826
BseRI GAGGAG 1 cut(s) 1988
BseXI GCAGC 5 cut(s) 785, 798, 1259, 1275, 1798
BseYI CCCAGC 1 cut(s) 1981
BsgI GTGCAG 1 cut(s) 1647
Bsh1236I CGCG 4 cut(s) 549, 828, 1000, 1277
BshFI GGCC 5 cut(s) 224, 622, 1328, 1562, 1611
BshTI ACCGGT 1 cut(s) 920
BsiHKAI GWGCWC 2 cut(s) 203, 1622
BsiHKCI CYCGRG 5 cut(s) 219, 291, 365, 617, 1121
BsiSI CCGG 8 cut(s) 220, 697, 921, 1367, 1482, 1506, 1997, 2046
BslFI GGGAC 1 cut(s) 1164
BsmAI GTCTC 6 cut(s) 402, 420, 1004, 1352, 1517, 2075
BsmFI GGGAC 1 cut(s) 1164
BsmI GAATGC 1 cut(s) 1785
BsnI GGCC 5 cut(s) 224, 622, 1328, 1562, 1611
Bso31I GGTCTC 2 cut(s) 402, 1517
BsoBI CYCGRG 5 cut(s) 219, 291, 365, 617, 1121
Bsp119I TTCGAA 1 cut(s) 1179
Bsp1286I GDGCHC 3 cut(s) 203, 1622, 2056
Bsp13I TCCGGA 1 cut(s) 1996
Bsp1407I TGTACA 1 cut(s) 1404
Bsp143I GATC 6 cut(s) 233, 580, 1231, 1549, 1800, 2072
BspANI GGCC 5 cut(s) 224, 622, 1328, 1562, 1611
BspCNI CTCAG 3 cut(s) 583, 1057, 1654
BspEI TCCGGA 1 cut(s) 1996
BspFNI CGCG 4 cut(s) 549, 828, 1000, 1277
BspLI GGNNCC 2 cut(s) 124, 996
BspMAI CTGCAG 1 cut(s) 1816
BspMI ACCTGC 2 cut(s) 947, 1914
BspOI GCTAGC 1 cut(s) 1781
BspPI GGATC 1 cut(s) 241
BspQI GCTCTTC 1 cut(s) 434
BspT104I TTCGAA 1 cut(s) 1179
BspTNI GGTCTC 2 cut(s) 402, 1517
BsrBI CCGCTC 1 cut(s) 1187
BsrDI GCAATG 4 cut(s) 511, 921, 1046, 1923
BsrFI RCCGGY 2 cut(s) 920, 2045
BsrGI TGTACA 1 cut(s) 1404
BsrI ACTGG 3 cut(s) 815, 1732, 2082
BssAI RCCGGY 2 cut(s) 920, 2045
BssECI CCNNGG 4 cut(s) 76, 219, 616, 1287
BssHII GCGCGC 1 cut(s) 826
BssMI GATC 6 cut(s) 233, 580, 1231, 1549, 1800, 2072
BssNI GRCGYC 1 cut(s) 2094
BssSI CACGAG 1 cut(s) 724
BssT1I CCWWGG 1 cut(s) 1287
Bst2BI CACGAG 1 cut(s) 724
Bst2UI CCWGG 3 cut(s) 77, 1608, 1834
Bst4CI ACNGT 4 cut(s) 171, 1296, 1336, 1445
Bst6I CTCTTC 2 cut(s) 434, 1491
BstACI GRCGYC 1 cut(s) 2094
BstAUI TGTACA 1 cut(s) 1404
BstBI TTCGAA 1 cut(s) 1179
BstC8I GCNNGC 7 cut(s) 226, 828, 893, 1779, 1783, 1903, 2047
BstDEI CTNAG 4 cut(s) 519, 591, 1065, 1641
BstENI CCTNNNNNAGG 1 cut(s) 594
BstF5I GGATG 9 cut(s) 346, 391, 490, 583, 859, 1249, 1363, 1936, 2005
BstFNI CGCG 4 cut(s) 549, 828, 1000, 1277
BstH2I RGCGCY 2 cut(s) 683, 1088
BstHHI GCGC 6 cut(s) 55, 682, 828, 830, 1036, 1087
BstKTI GATC 6 cut(s) 236, 583, 1234, 1552, 1803, 2075
BstMAI GTCTC 6 cut(s) 402, 420, 1004, 1352, 1517, 2075
BstMBI GATC 6 cut(s) 233, 580, 1231, 1549, 1800, 2072
BstMWI GCNNNNNNNGC 6 cut(s) 628, 698, 881, 1247, 1617, 2051
BstNI CCWGG 3 cut(s) 77, 1608, 1834
BstNSI RCATGY 5 cut(s) 767, 895, 1017, 1040, 1216
BstSCI CCNGG 7 cut(s) 75, 218, 219, 696, 1480, 1606, 1832
BstSFI CTRYAG 2 cut(s) 70, 1812
BstUI CGCG 4 cut(s) 549, 828, 1000, 1277
BstV1I GCAGC 5 cut(s) 785, 798, 1259, 1275, 1798
BstV2I GAAGAC 1 cut(s) 1147
BstXI CCANNNNNNTGG 2 cut(s) 133, 2077
Bsu36I CCTNAGG 1 cut(s) 591
BsuRI GGCC 5 cut(s) 224, 622, 1328, 1562, 1611
BtsCI GGATG 9 cut(s) 346, 391, 490, 583, 859, 1249, 1363, 1936, 2005
BtsI GCAGTG 2 cut(s) 708, 1314
BtsIMutI CAGTG 5 cut(s) 708, 1314, 1332, 1725, 2075
BveI ACCTGC 2 cut(s) 947, 1914
Cac8I GCNNGC 7 cut(s) 226, 828, 893, 1779, 1783, 1903, 2047
CaiI CAGNNNCTG 1 cut(s) 1564
CfoI GCGC 6 cut(s) 55, 682, 828, 830, 1036, 1087
Cfr10I RCCGGY 2 cut(s) 920, 2045
Cfr13I GGNCC 7 cut(s) 205, 222, 620, 994, 1327, 1561, 1859
Cfr9I CCCGGG 1 cut(s) 219
CseI GACGC 2 cut(s) 1283, 2102
Csp6I GTAC 5 cut(s) 93, 799, 1279, 1405, 1657
CspAI ACCGGT 1 cut(s) 920
CviAII CATG 9 cut(s) 764, 892, 1014, 1037, 1147, 1213, 1520, 1543, 1966
CviQI GTAC 5 cut(s) 93, 799, 1279, 1405, 1657
DdeI CTNAG 4 cut(s) 519, 591, 1065, 1641
DpnI GATC 6 cut(s) 235, 582, 1233, 1551, 1802, 2074
DpnII GATC 6 cut(s) 233, 580, 1231, 1549, 1800, 2072
Eam1104I CTCTTC 2 cut(s) 434, 1491
EarI CTCTTC 2 cut(s) 434, 1491
EciI GGCGGA 1 cut(s) 2021
Ecl136II GAGCTC 1 cut(s) 201
Eco130I CCWWGG 1 cut(s) 1287
Eco24I GRGCYC 2 cut(s) 203, 2056
Eco31I GGTCTC 2 cut(s) 402, 1517
Eco47I GGWCC 3 cut(s) 205, 994, 1859
Eco47III AGCGCT 1 cut(s) 681
Eco53kI GAGCTC 1 cut(s) 201
Eco57I CTGAAG 2 cut(s) 1476, 1586
Eco81I CCTNAGG 1 cut(s) 591
Eco88I CYCGRG 5 cut(s) 219, 291, 365, 617, 1121
EcoICRI GAGCTC 1 cut(s) 201
EcoNI CCTNNNNNAGG 1 cut(s) 594
EcoO109I RGGNCCY 3 cut(s) 994, 1327, 1561
EcoRII CCWGG 3 cut(s) 75, 1606, 1832
EcoT14I CCWWGG 1 cut(s) 1287
EcoT38I GRGCYC 2 cut(s) 203, 2056
ErhI CCWWGG 1 cut(s) 1287
FaeI CATG 9 cut(s) 767, 895, 1017, 1040, 1150, 1216, 1523, 1546, 1969
FalI AAGNNNNNCTT 2 cut(s) 1173, 1205
FaqI GGGAC 1 cut(s) 1164
FatI CATG 9 cut(s) 763, 891, 1013, 1036, 1146, 1212, 1519, 1542, 1965
FauI CCCGC 3 cut(s) 474, 1005, 2113
FauNDI CATATG 1 cut(s) 1909
FbaI TGATCA 3 cut(s) 580, 1231, 1800
Fnu4HI GCNGC 8 cut(s) 774, 787, 1131, 1185, 1248, 1264, 1812, 1935
FokI GGATG 9 cut(s) 353, 398, 477, 570, 866, 1256, 1350, 1943, 2012
FriOI GRGCYC 2 cut(s) 203, 2056
Fsp4HI GCNGC 8 cut(s) 774, 787, 1131, 1185, 1248, 1264, 1812, 1935
FspBI CTAG 2 cut(s) 872, 1778
GlaI GCGC 6 cut(s) 54, 681, 827, 829, 1035, 1086
GluI GCNGC 8 cut(s) 774, 787, 1131, 1185, 1248, 1264, 1812, 1935
GsaI CCCAGC 1 cut(s) 1985
GsuI CTGGAG 4 cut(s) 1590, 1749, 1970, 2099
HaeII RGCGCY 2 cut(s) 683, 1088
HaeIII GGCC 5 cut(s) 224, 622, 1328, 1562, 1611
HapII CCGG 8 cut(s) 220, 697, 921, 1367, 1482, 1506, 1997, 2046
HgaI GACGC 2 cut(s) 1283, 2102
HhaI GCGC 6 cut(s) 55, 682, 828, 830, 1036, 1087
Hin1I GRCGYC 1 cut(s) 2094
Hin1II CATG 9 cut(s) 767, 895, 1017, 1040, 1150, 1216, 1523, 1546, 1969
Hin6I GCGC 6 cut(s) 53, 680, 826, 828, 1034, 1085
HinP1I GCGC 6 cut(s) 53, 680, 826, 828, 1034, 1085
HpaII CCGG 8 cut(s) 220, 697, 921, 1367, 1482, 1506, 1997, 2046
HphI GGTGA 7 cut(s) 254, 365, 914, 1019, 1283, 1610, 1859
Hpy166II GTNNAC 1 cut(s) 545
Hpy8I GTNNAC 1 cut(s) 545
Hpy99I CGWCG 1 cut(s) 2096
HpyAV CCTTC 5 cut(s) 225, 1318, 1500, 1573, 1843
HpyCH4III ACNGT 4 cut(s) 171, 1296, 1336, 1445
HpyCH4IV ACGT 1 cut(s) 95
HpyF10VI GCNNNNNNNGC 6 cut(s) 628, 698, 881, 1247, 1617, 2051
HpyF3I CTNAG 4 cut(s) 519, 591, 1065, 1641
HpySE526I ACGT 1 cut(s) 95
Hsp92I GRCGYC 1 cut(s) 2094
Hsp92II CATG 9 cut(s) 767, 895, 1017, 1040, 1150, 1216, 1523, 1546, 1969
HspAI GCGC 6 cut(s) 53, 680, 826, 828, 1034, 1085
Kpn2I TCCGGA 1 cut(s) 1996
KroI GCCGGC 1 cut(s) 2045
KroNI GCCGGC 1 cut(s) 2047
Ksp22I TGATCA 3 cut(s) 580, 1231, 1800
Kzo9I GATC 6 cut(s) 233, 580, 1231, 1549, 1800, 2072
LguI GCTCTTC 1 cut(s) 434
LmnI GCTCC 2 cut(s) 128, 1609
Lsp1109I GCAGC 5 cut(s) 785, 798, 1259, 1275, 1798
LweI GCATC 5 cut(s) 499, 1234, 1591, 1903, 1921
MaeI CTAG 2 cut(s) 872, 1778
MaeII ACGT 1 cut(s) 95
MaeIII GTNAC 5 cut(s) 353, 902, 1160, 1271, 1793
MalI GATC 6 cut(s) 235, 582, 1233, 1551, 1802, 2074
MbiI CCGCTC 1 cut(s) 1187
MboI GATC 6 cut(s) 233, 580, 1231, 1549, 1800, 2072
MboII GAAGA 5 cut(s) 451, 648, 1152, 1508, 1838
MhlI GDGCHC 3 cut(s) 203, 1622, 2056
MluI ACGCGT 1 cut(s) 1275
MlyI GAGTC 9 cut(s) 109, 254, 350, 582, 1137, 1157, 1354, 1439, 1676
MmeI TCCRAC 3 cut(s) 262, 425, 1908
MroI TCCGGA 1 cut(s) 1996
MroNI GCCGGC 1 cut(s) 2045
MroXI GAANNNNTTC 2 cut(s) 1489, 1592
MseI TTAA 3 cut(s) 1341, 1425, 2118
MslI CAYNNNNRTG 2 cut(s) 131, 1217
MspA1I CMGCKG 1 cut(s) 469
MspI CCGG 8 cut(s) 220, 697, 921, 1367, 1482, 1506, 1997, 2046
MspR9I CCNGG 7 cut(s) 77, 220, 221, 698, 1482, 1608, 1834
Mva1269I GAATGC 1 cut(s) 1785
MvaI CCWGG 3 cut(s) 77, 1608, 1834
MvnI CGCG 4 cut(s) 549, 828, 1000, 1277
MwoI GCNNNNNNNGC 6 cut(s) 628, 698, 881, 1247, 1617, 2051
NaeI GCCGGC 1 cut(s) 2047
NciI CCSGG 4 cut(s) 220, 221, 698, 1482
NdeI CATATG 1 cut(s) 1909
NdeII GATC 6 cut(s) 233, 580, 1231, 1549, 1800, 2072
NgoMIV GCCGGC 1 cut(s) 2045
NheI GCTAGC 1 cut(s) 1777
NlaIII CATG 9 cut(s) 767, 895, 1017, 1040, 1150, 1216, 1523, 1546, 1969
NlaIV GGNNCC 2 cut(s) 124, 996
NmuCI GTSAC 4 cut(s) 353, 902, 1160, 1271
NspI RCATGY 5 cut(s) 767, 895, 1017, 1040, 1216
NspV TTCGAA 1 cut(s) 1179
PaeI GCATGC 1 cut(s) 895
PaeR7I CTCGAG 2 cut(s) 291, 1121
PauI GCGCGC 1 cut(s) 826
PciI ACATGT 2 cut(s) 1013, 1212
PciSI GCTCTTC 1 cut(s) 434
PctI GAATGC 1 cut(s) 1785
PdiI GCCGGC 1 cut(s) 2047
PdmI GAANNNNTTC 2 cut(s) 1489, 1592
PfeI GAWTC 6 cut(s) 13, 35, 248, 811, 1485, 1945
PfoI TCCNGGA 1 cut(s) 1480
PinAI ACCGGT 1 cut(s) 920
PkrI GCNGC 8 cut(s) 775, 788, 1132, 1186, 1249, 1265, 1813, 1936
PleI GAGTC 9 cut(s) 108, 254, 350, 581, 1137, 1157, 1354, 1438, 1676
PpsI GAGTC 9 cut(s) 108, 254, 350, 581, 1137, 1157, 1354, 1438, 1676
PpuMI RGGWCCY 1 cut(s) 994
PscI ACATGT 2 cut(s) 1013, 1212
Psp124BI GAGCTC 1 cut(s) 203
Psp5II RGGWCCY 1 cut(s) 994
Psp6I CCWGG 3 cut(s) 75, 1606, 1832
PspFI CCCAGC 1 cut(s) 1981
PspGI CCWGG 3 cut(s) 75, 1606, 1832
PspN4I GGNNCC 2 cut(s) 124, 996
PspPI GGNCC 7 cut(s) 205, 222, 620, 994, 1327, 1561, 1859
PspPPI RGGWCCY 1 cut(s) 994
PspXI VCTCGAGB 1 cut(s) 1121
PstI CTGCAG 1 cut(s) 1816
PstNI CAGNNNCTG 1 cut(s) 1564
PteI GCGCGC 1 cut(s) 826
RsaI GTAC 5 cut(s) 94, 800, 1280, 1406, 1658
RsaNI GTAC 5 cut(s) 93, 799, 1279, 1405, 1657
RseI CAYNNNNRTG 2 cut(s) 131, 1217
SacI GAGCTC 1 cut(s) 203
SapI GCTCTTC 1 cut(s) 434
SaqAI TTAA 3 cut(s) 1341, 1425, 2118
SatI GCNGC 8 cut(s) 774, 787, 1131, 1185, 1248, 1264, 1812, 1935
Sau3AI GATC 6 cut(s) 233, 580, 1231, 1549, 1800, 2072
Sau96I GGNCC 7 cut(s) 205, 222, 620, 994, 1327, 1561, 1859
SchI GAGTC 9 cut(s) 109, 254, 350, 582, 1137, 1157, 1354, 1439, 1676
ScrFI CCNGG 7 cut(s) 77, 220, 221, 698, 1482, 1608, 1834
SduI GDGCHC 3 cut(s) 203, 1622, 2056
SfaNI GCATC 5 cut(s) 499, 1234, 1591, 1903, 1921
SfcI CTRYAG 2 cut(s) 70, 1812
Sfr274I CTCGAG 2 cut(s) 291, 1121
SfuI TTCGAA 1 cut(s) 1179
SinI GGWCC 3 cut(s) 205, 994, 1859
SlaI CTCGAG 2 cut(s) 291, 1121
SmaI CCCGGG 1 cut(s) 221
SmiMI CAYNNNNRTG 2 cut(s) 131, 1217
SmlI CTYRAG 6 cut(s) 291, 683, 821, 1121, 1190, 1574
SmoI CTYRAG 6 cut(s) 291, 683, 821, 1121, 1190, 1574
SphI GCATGC 1 cut(s) 895
SspI AATATT 2 cut(s) 942, 1593
SspMI CTAG 2 cut(s) 872, 1778
SstI GAGCTC 1 cut(s) 203
StyD4I CCNGG 7 cut(s) 75, 218, 219, 696, 1480, 1606, 1832
StyI CCWWGG 1 cut(s) 1287
TaaI ACNGT 4 cut(s) 171, 1296, 1336, 1445
TaiI ACGT 1 cut(s) 98
TatI WGTACW 3 cut(s) 798, 1404, 1656
TauI GCSGC 3 cut(s) 1133, 1187, 1937
TfiI GAWTC 6 cut(s) 13, 35, 248, 811, 1485, 1945
Tru1I TTAA 3 cut(s) 1341, 1425, 2118
Tru9I TTAA 3 cut(s) 1341, 1425, 2118
TscAI CASTG 5 cut(s) 708, 1314, 1339, 1732, 2082
TseFI GTSAC 4 cut(s) 353, 902, 1160, 1271
TseI GCWGC 5 cut(s) 773, 786, 1247, 1263, 1811
Tsp45I GTSAC 4 cut(s) 353, 902, 1160, 1271
TspDTI ATGAA 5 cut(s) 26, 48, 155, 1508, 1559
TspGWI ACGGA 2 cut(s) 808, 1709
TspMI CCCGGG 1 cut(s) 219
TspRI CASTG 5 cut(s) 708, 1314, 1339, 1732, 2082
VpaK11BI GGWCC 3 cut(s) 205, 994, 1859
XagI CCTNNNNNAGG 1 cut(s) 594
XapI RAATTY 3 cut(s) 966, 1461, 1672
XceI RCATGY 5 cut(s) 767, 895, 1017, 1040, 1216
XcmI CCANNNNNNNNNTGG 5 cut(s) 745, 1103, 1549, 1840, 1945
XhoI CTCGAG 2 cut(s) 291, 1121
XmaI CCCGGG 1 cut(s) 219
XmnI GAANNNNTTC 2 cut(s) 1489, 1592
XspI CTAG 2 cut(s) 872, 1778
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.