pycom111g03810

May act as a component of the auxin efflux carrier

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
SuperScaffold_111
OG0016676
Physical Location & Seq
Reverse (-)
2313833 .. 2315515
1683 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1038 bp
ATGATTTCTCTAACAGATGTCTACCATGTTGTGGCAGCCACTGTTCCTCTATATGTTGCCATGATTTTGGCCTACCTCTCTGTGAAATGGTGGAAGCTCTTCACGCCAGATCAATGCTCTGGAATTAACAAATTTGTTGCCAAATTCTCAATCCCTCTTCTGTCCTTTCAAATCATTTCTTCCAACGACCCTTACAAAATGAACCATAAACTCATCCTCGCGGACTGCCTCCAAAAACTGACTGCATTCCTGGCACTGGCAGCAGTCACTAAATTCAGTTCCTATGGCGGGTTGAATTCCATCATAACCGGCCTCTCTCTTTCGACGCTTCCTAACACGTTGATCCTCGGGATTCCGCTGCTGAAGGCCATGTACGGGGATGAGGCGGCCAAGCTTGTGACACAGATAGTTGTGTTGCAGAGCTTAATCTGGTACAATATGCTGCTGTTTCTGTTCGAGTTCAGGGCCGCTAAGGCGGCGTCTGTCACACCTTCATCGGAACCCACTGCAGATGAGACGGAGGACGAAACGAGAGCCAACAATACCAAGAAGATCAAATCTATTCTGTTAACAGTTGGGAGGAAGCTTATAACCAATCCAAACACTCATGCAACATTGTTGGGTCTGATTTGGGCAAGCATACACTACAGGTGGGAAGTGAAGCTGCCAGAAATCATTGCGCAATCAATCGCGATACTGTCGAATGGAGGACTTGGGATGGCAATGTTCGGCTTAGGCCTTTTTATGGCATCGCGCGGTAGCATAATAGCGTGTGGGACACGAAAGGCGATGATAGCCATGGGATTGAAGTTCATAGCCGGCCCTGCGATAATGGCGGTGTCCTCCTTTGCAGTTGGACTAAGGGGCAGAGTTCTCAGAGTGGCAGTAGTGCAGGCAACTCTTCCTCAAGGAATCGTTCCTTTCGTGTTTGCGAAAGAATACAATGTACATCCAGACATTTTGAGCACCGGGGTTATTTTTGGGATGCTCATTGCATTGCCAATAGCATTGGCCTACTACTTCCTTCTGGGATTGTAA

Protein Analysis

346

Amino Acids

37.45

Weight (kDa)

9.53

Isoelectric Point (pI)

29.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mem_trans PF03547 9 - 340 1.2e-86 Membrane transport protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016676)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G15100
fragaria_vesca FvH4_6g49240
malus_domestica MD09G1047300.v1.1
prunus_persica Prupe.3G271700_v2.0.a1
pyrus_communis pycom111g03810
rosa_chinensis RchiOBHm_Chr2g0169101
rosa_laevigata RLG00000021834
rosa_roxburghii Rroxscaffold_2G00082450
rosa_rugosa Rorug02G0536900
rosa_samantha Rh2AG608800 Rh2BG621700 Rh2CG590400 Rh2DG632300
rosa_wichuraiana Rw2G050480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 590
Acc16I TGCGCA 1 cut(s) 681
AccB7I CCANNNNNTGG 1 cut(s) 31
AccI GTMKAC 1 cut(s) 21
AccII CGCG 4 cut(s) 221, 692, 754, 756
AciI CCGC 8 cut(s) 221, 288, 356, 386, 468, 476, 756, 836
AclWI GGATC 1 cut(s) 337
AcoI YGGCCR 1 cut(s) 387
AcsI RAATTY 4 cut(s) 131, 143, 272, 295
AcuI CTGAAG 1 cut(s) 383
AcyI GRCGYC 1 cut(s) 479
AfaI GTAC 3 cut(s) 374, 434, 948
AfiI CCNNNNNNNGG 5 cut(s) 31, 256, 288, 375, 745
AflIII ACRYGT 1 cut(s) 336
AgsI TTSAA 3 cut(s) 170, 295, 808
AjnI CCWGG 1 cut(s) 249
AluBI AGCT 5 cut(s) 97, 394, 423, 586, 664
AluI AGCT 5 cut(s) 97, 394, 423, 586, 664
Alw21I GWGCWC 1 cut(s) 968
Alw26I GTCTC 1 cut(s) 509
AlwI GGATC 1 cut(s) 337
AlwNI CAGNNNCTG 1 cut(s) 41
Ama87I CYCGRG 1 cut(s) 347
AoxI GGCC 8 cut(s) 69, 310, 366, 387, 465, 736, 820, 1011
ApeKI GCWGC 5 cut(s) 35, 260, 358, 442, 664
ApoI RAATTY 4 cut(s) 131, 143, 272, 295
Asp700I GAANNNNTTC 1 cut(s) 98
AspLEI GCGC 2 cut(s) 682, 756
AspS9I GGNCC 2 cut(s) 465, 821
AsuC2I CCSGG 1 cut(s) 970
AvaI CYCGRG 1 cut(s) 347
BarI GAAGNNNNNNTAC 2 cut(s) 356, 388
Bbv12I GWGCWC 1 cut(s) 968
BbvI GCAGC 5 cut(s) 47, 272, 345, 429, 651
BccI CCATC 2 cut(s) 308, 712
BciT130I CCWGG 1 cut(s) 251
BcnI CCSGG 1 cut(s) 970
BcoDI GTCTC 1 cut(s) 509
BfmI CTRYAG 2 cut(s) 507, 646
BglI GCCNNNNNGGC 1 cut(s) 473
BisI GCNGC 8 cut(s) 36, 261, 359, 387, 443, 468, 477, 665
BlsI GCNGC 8 cut(s) 37, 262, 360, 388, 444, 469, 478, 666
Bme1390I CCNGG 2 cut(s) 251, 970
BmeT110I CYCGRG 1 cut(s) 347
BmgT120I GGNCC 2 cut(s) 465, 821
BmiI GGNNCC 1 cut(s) 501
BmrFI CCNGG 2 cut(s) 251, 970
BmsI GCATC 2 cut(s) 758, 975
Bpu10I CCTNAGC 2 cut(s) 471, 733
BpuEI CTTGAG 1 cut(s) 891
BpuMI CCSGG 1 cut(s) 970
BsaHI GRCGYC 1 cut(s) 479
BsaJI CCNNGG 3 cut(s) 346, 798, 969
Bsc4I CCNNNNNNNGG 5 cut(s) 31, 256, 288, 375, 745
Bse118I RCCGGY 2 cut(s) 308, 818
Bse1I ACTGG 1 cut(s) 261
Bse3DI GCAATG 4 cut(s) 675, 729, 990, 995
BseBI CCWGG 1 cut(s) 251
BseDI CCNNGG 3 cut(s) 346, 798, 969
BseGI GGATG 5 cut(s) 213, 385, 723, 949, 990
BseLI CCNNNNNNNGG 5 cut(s) 31, 256, 288, 375, 745
BseMI GCAATG 4 cut(s) 675, 729, 990, 995
BseMII CTCAG 1 cut(s) 889
BseNI ACTGG 1 cut(s) 261
BseXI GCAGC 5 cut(s) 47, 272, 345, 429, 651
BsgI GTGCAG 1 cut(s) 911
Bsh1236I CGCG 4 cut(s) 221, 692, 754, 756
BshFI GGCC 8 cut(s) 71, 312, 368, 389, 467, 738, 822, 1013
BsiHKAI GWGCWC 1 cut(s) 968
BsiHKCI CYCGRG 1 cut(s) 347
BsiSI CCGG 3 cut(s) 309, 819, 969
BslFI GGGAC 1 cut(s) 790
BslI CCNNNNNNNGG 5 cut(s) 31, 256, 288, 375, 745
BsmAI GTCTC 1 cut(s) 509
BsmBI CGTCTC 1 cut(s) 509
BsmFI GGGAC 1 cut(s) 790
BsmI GAATGC 1 cut(s) 245
BsnI GGCC 8 cut(s) 71, 312, 368, 389, 467, 738, 822, 1013
BsoBI CYCGRG 1 cut(s) 347
Bsp1286I GDGCHC 1 cut(s) 968
Bsp1407I TGTACA 1 cut(s) 946
Bsp143I GATC 3 cut(s) 109, 342, 552
Bsp19I CCATGG 1 cut(s) 798
Bsp68I TCGCGA 1 cut(s) 692
BspACI CCGC 8 cut(s) 221, 288, 356, 386, 468, 476, 756, 836
BspANI GGCC 8 cut(s) 71, 312, 368, 389, 467, 738, 822, 1013
BspCNI CTCAG 1 cut(s) 888
BspFNI CGCG 4 cut(s) 221, 692, 754, 756
BspLI GGNNCC 1 cut(s) 501
BspMAI CTGCAG 1 cut(s) 511
BspPI GGATC 1 cut(s) 337
BspQI GCTCTTC 1 cut(s) 104
BsrDI GCAATG 4 cut(s) 675, 729, 990, 995
BsrFI RCCGGY 2 cut(s) 308, 818
BsrGI TGTACA 1 cut(s) 946
BsrI ACTGG 1 cut(s) 261
BssAI RCCGGY 2 cut(s) 308, 818
BssECI CCNNGG 3 cut(s) 346, 798, 969
BssMI GATC 3 cut(s) 109, 342, 552
BssNI GRCGYC 1 cut(s) 479
BssT1I CCWWGG 1 cut(s) 798
Bst2UI CCWGG 1 cut(s) 251
Bst4CI ACNGT 3 cut(s) 43, 574, 699
Bst6I CTCTTC 3 cut(s) 104, 162, 906
BstACI GRCGYC 1 cut(s) 479
BstAUI TGTACA 1 cut(s) 946
BstC8I GCNNGC 3 cut(s) 637, 820, 894
BstDEI CTNAG 4 cut(s) 471, 733, 860, 875
BstDSI CCRYGG 1 cut(s) 798
BstF5I GGATG 5 cut(s) 213, 385, 723, 949, 990
BstFNI CGCG 4 cut(s) 221, 692, 754, 756
BstHHI GCGC 2 cut(s) 682, 756
BstKTI GATC 3 cut(s) 112, 345, 555
BstMAI GTCTC 1 cut(s) 509
BstMBI GATC 3 cut(s) 109, 342, 552
BstMWI GCNNNNNNNGC 8 cut(s) 103, 251, 260, 473, 476, 794, 824, 833
BstNI CCWGG 1 cut(s) 251
BstSCI CCNGG 2 cut(s) 249, 968
BstSFI CTRYAG 2 cut(s) 507, 646
BstUI CGCG 4 cut(s) 221, 692, 754, 756
BstV1I GCAGC 5 cut(s) 47, 272, 345, 429, 651
BstXI CCANNNNNNTGG 1 cut(s) 67
BsuRI GGCC 8 cut(s) 71, 312, 368, 389, 467, 738, 822, 1013
BtgI CCRYGG 1 cut(s) 798
BtgZI GCGATG 2 cut(s) 735, 803
BtsCI GGATG 5 cut(s) 213, 385, 723, 949, 990
BtsI GCAGTG 1 cut(s) 504
BtsIMutI CAGTG 3 cut(s) 39, 254, 504
BtuMI TCGCGA 1 cut(s) 692
Cac8I GCNNGC 3 cut(s) 637, 820, 894
CaiI CAGNNNCTG 1 cut(s) 41
CfoI GCGC 2 cut(s) 682, 756
Cfr10I RCCGGY 2 cut(s) 308, 818
Cfr13I GGNCC 2 cut(s) 465, 821
CseI GACGC 2 cut(s) 334, 468
Csp6I GTAC 3 cut(s) 373, 433, 947
CviAII CATG 5 cut(s) 26, 61, 370, 608, 799
CviQI GTAC 3 cut(s) 373, 433, 947
DdeI CTNAG 4 cut(s) 471, 733, 860, 875
DpnI GATC 3 cut(s) 111, 344, 554
DpnII GATC 3 cut(s) 109, 342, 552
EaeI YGGCCR 1 cut(s) 387
Eam1104I CTCTTC 3 cut(s) 104, 162, 906
EarI CTCTTC 3 cut(s) 104, 162, 906
Eco130I CCWWGG 1 cut(s) 798
Eco147I AGGCCT 1 cut(s) 738
Eco57I CTGAAG 1 cut(s) 383
Eco88I CYCGRG 1 cut(s) 347
EcoRI GAATTC 1 cut(s) 295
EcoRII CCWGG 1 cut(s) 249
EcoT14I CCWWGG 1 cut(s) 798
ErhI CCWWGG 1 cut(s) 798
Esp3I CGTCTC 1 cut(s) 509
FaeI CATG 5 cut(s) 29, 64, 373, 611, 802
FaqI GGGAC 1 cut(s) 790
FatI CATG 5 cut(s) 25, 60, 369, 607, 798
FauI CCCGC 1 cut(s) 281
FblI GTMKAC 1 cut(s) 21
Fnu4HI GCNGC 8 cut(s) 36, 261, 359, 387, 443, 468, 477, 665
FokI GGATG 5 cut(s) 200, 392, 730, 936, 997
Fsp4HI GCNGC 8 cut(s) 36, 261, 359, 387, 443, 468, 477, 665
FspI TGCGCA 1 cut(s) 681
GlaI GCGC 2 cut(s) 681, 755
GluI GCNGC 8 cut(s) 36, 261, 359, 387, 443, 468, 477, 665
HaeIII GGCC 8 cut(s) 71, 312, 368, 389, 467, 738, 822, 1013
HapII CCGG 3 cut(s) 309, 819, 969
HgaI GACGC 2 cut(s) 334, 468
HhaI GCGC 2 cut(s) 682, 756
Hin1I GRCGYC 1 cut(s) 479
Hin1II CATG 5 cut(s) 29, 64, 373, 611, 802
Hin6I GCGC 2 cut(s) 680, 754
HinP1I GCGC 2 cut(s) 680, 754
HincII GTYRAC 1 cut(s) 570
HindII GTYRAC 1 cut(s) 570
HindIII AAGCTT 2 cut(s) 392, 584
HinfI GANTC 2 cut(s) 352, 912
HpaI GTTAAC 1 cut(s) 570
HpaII CCGG 3 cut(s) 309, 819, 969
Hpy166II GTNNAC 2 cut(s) 22, 570
Hpy188I TCNGA 3 cut(s) 499, 627, 878
Hpy188III TCNNGA 4 cut(s) 120, 349, 691, 953
Hpy8I GTNNAC 2 cut(s) 22, 570
Hpy99I CGWCG 1 cut(s) 328
HpyAV CCTTC 3 cut(s) 358, 501, 1034
HpyCH4III ACNGT 3 cut(s) 43, 574, 699
HpyCH4IV ACGT 1 cut(s) 338
HpyCH4V TGCA 7 cut(s) 245, 418, 509, 611, 851, 892, 995
HpyF10VI GCNNNNNNNGC 8 cut(s) 103, 251, 260, 473, 476, 794, 824, 833
HpyF3I CTNAG 4 cut(s) 471, 733, 860, 875
HpySE526I ACGT 1 cut(s) 338
Hsp92I GRCGYC 1 cut(s) 479
Hsp92II CATG 5 cut(s) 29, 64, 373, 611, 802
HspAI GCGC 2 cut(s) 680, 754
KroI GCCGGC 1 cut(s) 818
KroNI GCCGGC 1 cut(s) 820
KspAI GTTAAC 1 cut(s) 570
Kzo9I GATC 3 cut(s) 109, 342, 552
LguI GCTCTTC 1 cut(s) 104
Lsp1109I GCAGC 5 cut(s) 47, 272, 345, 429, 651
LweI GCATC 2 cut(s) 758, 975
MaeII ACGT 1 cut(s) 338
MaeIII GTNAC 3 cut(s) 265, 397, 484
MalI GATC 3 cut(s) 111, 344, 554
MboI GATC 3 cut(s) 109, 342, 552
MboII GAAGA 5 cut(s) 91, 149, 171, 562, 893
MhlI GDGCHC 1 cut(s) 968
MluCI AATT 5 cut(s) 123, 131, 143, 272, 295
MmeI TCCRAC 2 cut(s) 207, 835
MroNI GCCGGC 1 cut(s) 818
MroXI GAANNNNTTC 1 cut(s) 98
MseI TTAA 3 cut(s) 126, 425, 569
MspA1I CMGCKG 1 cut(s) 358
MspI CCGG 3 cut(s) 309, 819, 969
MspR9I CCNGG 2 cut(s) 251, 970
Mva1269I GAATGC 1 cut(s) 245
MvaI CCWGG 1 cut(s) 251
MvnI CGCG 4 cut(s) 221, 692, 754, 756
MwoI GCNNNNNNNGC 8 cut(s) 103, 251, 260, 473, 476, 794, 824, 833
NaeI GCCGGC 1 cut(s) 820
NciI CCSGG 1 cut(s) 970
NcoI CCATGG 1 cut(s) 798
NdeII GATC 3 cut(s) 109, 342, 552
NgoMIV GCCGGC 1 cut(s) 818
NlaIII CATG 5 cut(s) 29, 64, 373, 611, 802
NlaIV GGNNCC 1 cut(s) 501
NmuCI GTSAC 3 cut(s) 265, 397, 484
NruI TCGCGA 1 cut(s) 692
NsbI TGCGCA 1 cut(s) 681
PceI AGGCCT 1 cut(s) 738
PciSI GCTCTTC 1 cut(s) 104
PcsI WCGNNNNNNNCGW 1 cut(s) 921
PctI GAATGC 1 cut(s) 245
PdiI GCCGGC 1 cut(s) 820
PdmI GAANNNNTTC 1 cut(s) 98
PfeI GAWTC 2 cut(s) 352, 912
PflMI CCANNNNNTGG 1 cut(s) 31
PkrI GCNGC 8 cut(s) 37, 262, 360, 388, 444, 469, 478, 666
PsiI TTATAA 1 cut(s) 590
Psp6I CCWGG 1 cut(s) 249
PspGI CCWGG 1 cut(s) 249
PspN4I GGNNCC 1 cut(s) 501
PspPI GGNCC 2 cut(s) 465, 821
PstI CTGCAG 1 cut(s) 511
PstNI CAGNNNCTG 1 cut(s) 41
RruI TCGCGA 1 cut(s) 692
RsaI GTAC 3 cut(s) 374, 434, 948
RsaNI GTAC 3 cut(s) 373, 433, 947
SapI GCTCTTC 1 cut(s) 104
SaqAI TTAA 3 cut(s) 126, 425, 569
SatI GCNGC 8 cut(s) 36, 261, 359, 387, 443, 468, 477, 665
Sau3AI GATC 3 cut(s) 109, 342, 552
Sau96I GGNCC 2 cut(s) 465, 821
ScrFI CCNGG 2 cut(s) 251, 970
SduI GDGCHC 1 cut(s) 968
SetI ASST 9 cut(s) 78, 99, 341, 396, 425, 493, 588, 653, 666
SfaNI GCATC 2 cut(s) 758, 975
SfcI CTRYAG 2 cut(s) 507, 646
SmlI CTYRAG 1 cut(s) 906
SmoI CTYRAG 1 cut(s) 906
Sse9I AATT 5 cut(s) 123, 131, 143, 272, 295
SseBI AGGCCT 1 cut(s) 738
SsiI CCGC 8 cut(s) 221, 288, 356, 386, 468, 476, 756, 836
StuI AGGCCT 1 cut(s) 738
StyD4I CCNGG 2 cut(s) 249, 968
StyI CCWWGG 1 cut(s) 798
TaaI ACNGT 3 cut(s) 43, 574, 699
TaiI ACGT 1 cut(s) 341
TaqI TCGA 3 cut(s) 323, 456, 701
TasI AATT 5 cut(s) 123, 131, 143, 272, 295
TatI WGTACW 1 cut(s) 946
TauI GCSGC 3 cut(s) 389, 470, 479
TfiI GAWTC 2 cut(s) 352, 912
Tru1I TTAA 3 cut(s) 126, 425, 569
Tru9I TTAA 3 cut(s) 126, 425, 569
TscAI CASTG 3 cut(s) 46, 261, 511
TseFI GTSAC 3 cut(s) 265, 397, 484
TseI GCWGC 5 cut(s) 35, 260, 358, 442, 664
Tsp45I GTSAC 3 cut(s) 265, 397, 484
TspDTI ATGAA 3 cut(s) 215, 483, 802
TspGWI ACGGA 1 cut(s) 533
TspRI CASTG 3 cut(s) 46, 261, 511
Van91I CCANNNNNTGG 1 cut(s) 31
XapI RAATTY 4 cut(s) 131, 143, 272, 295
XmiI GTMKAC 1 cut(s) 21
XmnI GAANNNNTTC 1 cut(s) 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.