Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0018518

Physical Location & Seq

Genomic Coordinates Forward (+)

3399027 .. 3399682

Gene Structure 656 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGTCGAAGCTTTGGTGGTGTTTGATGATGGCAAAGAGGGTGGAGATTGACTCGTCACAGTTAGTACGAGGTGGGATTGTAGAGCCGACATTGGTCATTGGGAAGTGCGACAATGGGAGAGGGTATGTGGCGAAACTAGAGAAGAACCAGAATCATGCGCTGGTGACTCTAGCTATGCGGCATTTTCTTAGGTCGAATAAGCAGGATTTTGATCCTGACAAAAGTTGTAGCAACTCTTTCAGTTCTCCTGGATTGTCCTTGGATGCTTCCGCAGATGTCTGGGCTGATCGTAGCAGTTTCGGACAGGCGGAATTTGCTGTGCGGAGTGATGTCAATTATTTTGGAAGAGGCTGGTTGAGCACATTCGGCATTGATGCCCAAAGTTTGCTTGTTTTTTTTCCAAAGACATGCAAGCCAGTGGTCCTGCATTTTATTATACGACACAGCTTGACGAAGAAGAGATGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE SWIM

Protein Analysis

156

Amino Acids

17.43

Weight (kDa)

9.37

Isoelectric Point (pI)

47.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018518)

Species	Orthologous Gene IDs
prunus_persica	Prupe.8G037300_v2.0.a1
pyrus_communis	pycom111g05270
rosa_laevigata	RLG00000021612
rosa_multiflora	Rmu_co8131344.1_g000001 Rmu_sc0007974.1_g000005 Rmu_sc0030614.1_g000001
rosa_rugosa	Rorug02G0522300
rosa_samantha	Rh2AG588400 Rh2BG600400 Rh2DG610600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	178, 270, 308, 322
AclWI	GGATC	1 cut(s)	206
AcsI	RAATTY	1 cut(s)	311
AfaI	GTAC	1 cut(s)	66
AjnI	CCWGG	1 cut(s)	247
AluBI	AGCT	3 cut(s)	10, 173, 447
AluI	AGCT	3 cut(s)	10, 173, 447
Alw21I	GWGCWC	1 cut(s)	362
AlwI	GGATC	1 cut(s)	206
ApoI	RAATTY	1 cut(s)	311
AspLEI	GCGC	1 cut(s)	160
AspS9I	GGNCC	1 cut(s)	421
AsuHPI	GGTGA	1 cut(s)	175
AvaII	GGWCC	1 cut(s)	421
Bbv12I	GWGCWC	1 cut(s)	362
BccI	CCATC	1 cut(s)	22
BciT130I	CCWGG	1 cut(s)	249
BfaI	CTAG	2 cut(s)	137, 170
BisI	GCNGC	1 cut(s)	179
BlsI	GCNGC	1 cut(s)	180
Bme1390I	CCNGG	1 cut(s)	249
Bme18I	GGWCC	1 cut(s)	421
BmgT120I	GGNCC	1 cut(s)	421
BmrFI	CCNGG	1 cut(s)	249
BmsI	GCATC	3 cut(s)	253, 364, 452
BoxI	GACNNNNGTC	1 cut(s)	92
BplI	GAGNNNNNCTC	2 cut(s)	35, 67
BsaBI	GATNNNNATC	1 cut(s)	210
BsaJI	CCNNGG	1 cut(s)	258
Bse1I	ACTGG	1 cut(s)	416
Bse8I	GATNNNNATC	1 cut(s)	210
BseBI	CCWGG	1 cut(s)	249
BseDI	CCNNGG	1 cut(s)	258
BseGI	GGATG	1 cut(s)	268
BseJI	GATNNNNATC	1 cut(s)	210
BseNI	ACTGG	1 cut(s)	416
BsiHKAI	GWGCWC	1 cut(s)	362
Bsp1286I	GDGCHC	1 cut(s)	362
Bsp143I	GATC	2 cut(s)	211, 286
BspACI	CCGC	4 cut(s)	178, 270, 308, 322
BspPI	GGATC	1 cut(s)	206
BsrI	ACTGG	1 cut(s)	416
BssECI	CCNNGG	1 cut(s)	258
BssMI	GATC	2 cut(s)	211, 286
BssT1I	CCWWGG	1 cut(s)	258
Bst2UI	CCWGG	1 cut(s)	249
Bst4CI	ACNGT	1 cut(s)	60
Bst6I	CTCTTC	2 cut(s)	340, 452
BstC8I	GCNNGC	1 cut(s)	413
BstDEI	CTNAG	1 cut(s)	188
BstF5I	GGATG	1 cut(s)	268
BstHHI	GCGC	1 cut(s)	160
BstKTI	GATC	2 cut(s)	214, 289
BstMBI	GATC	2 cut(s)	211, 286
BstMWI	GCNNNNNNNGC	3 cut(s)	314, 357, 366
BstNI	CCWGG	1 cut(s)	249
BstNSI	RCATGY	1 cut(s)	411
BstPAI	GACNNNNGTC	1 cut(s)	92
BstSCI	CCNGG	1 cut(s)	247
BtsCI	GGATG	1 cut(s)	268
BtsIMutI	CAGTG	1 cut(s)	423
Cac8I	GCNNGC	1 cut(s)	413
CfoI	GCGC	1 cut(s)	160
Cfr13I	GGNCC	1 cut(s)	421
Csp6I	GTAC	1 cut(s)	65
CspCI	CAANNNNNGTGG	2 cut(s)	21, 56
CviAII	CATG	2 cut(s)	155, 408
CviJI	RGCY	7 cut(s)	10, 85, 173, 284, 351, 415, 447
CviKI_1	RGCY	7 cut(s)	10, 85, 173, 284, 351, 415, 447
CviQI	GTAC	1 cut(s)	65
DdeI	CTNAG	1 cut(s)	188
DpnI	GATC	2 cut(s)	213, 288
DpnII	GATC	2 cut(s)	211, 286
Eam1104I	CTCTTC	2 cut(s)	340, 452
EarI	CTCTTC	2 cut(s)	340, 452
EciI	GGCGGA	1 cut(s)	323
Eco130I	CCWWGG	1 cut(s)	258
Eco47I	GGWCC	1 cut(s)	421
EcoRII	CCWGG	1 cut(s)	247
EcoT14I	CCWWGG	1 cut(s)	258
ErhI	CCWWGG	1 cut(s)	258
FaeI	CATG	2 cut(s)	158, 411
FaiI	YATR	5 cut(s)	126, 156, 176, 409, 437
FatI	CATG	2 cut(s)	154, 407
Fnu4HI	GCNGC	1 cut(s)	179
FokI	GGATG	1 cut(s)	275
Fsp4HI	GCNGC	1 cut(s)	179
FspBI	CTAG	2 cut(s)	137, 170
GlaI	GCGC	1 cut(s)	159
GluI	GCNGC	1 cut(s)	179
HhaI	GCGC	1 cut(s)	160
Hin1II	CATG	2 cut(s)	158, 411
Hin6I	GCGC	1 cut(s)	158
HinP1I	GCGC	1 cut(s)	158
HindIII	AAGCTT	1 cut(s)	8
HinfI	GANTC	3 cut(s)	50, 151, 166
HphI	GGTGA	1 cut(s)	175
Hpy188I	TCNGA	1 cut(s)	302
Hpy188III	TCNNGA	1 cut(s)	215
HpyCH4III	ACNGT	1 cut(s)	60
HpyCH4V	TGCA	2 cut(s)	411, 427
HpyF10VI	GCNNNNNNNGC	3 cut(s)	314, 357, 366
HpyF3I	CTNAG	1 cut(s)	188
Hsp92II	CATG	2 cut(s)	158, 411
HspAI	GCGC	1 cut(s)	158
Kzo9I	GATC	2 cut(s)	211, 286
LweI	GCATC	3 cut(s)	253, 364, 452
MaeI	CTAG	2 cut(s)	137, 170
MaeIII	GTNAC	2 cut(s)	54, 163
MalI	GATC	2 cut(s)	213, 288
MboI	GATC	2 cut(s)	211, 286
MboII	GAAGA	3 cut(s)	154, 357, 466
MhlI	GDGCHC	1 cut(s)	362
MluCI	AATT	2 cut(s)	311, 334
MlyI	GAGTC	2 cut(s)	44, 160
MnlI	CCTC	4 cut(s)	30, 62, 113, 341
MspR9I	CCNGG	1 cut(s)	249
MvaI	CCWGG	1 cut(s)	249
MwoI	GCNNNNNNNGC	3 cut(s)	314, 357, 366
NdeII	GATC	2 cut(s)	211, 286
NlaIII	CATG	2 cut(s)	158, 411
NmuCI	GTSAC	2 cut(s)	54, 163
NspI	RCATGY	1 cut(s)	411
PfeI	GAWTC	1 cut(s)	151
PfoI	TCCNGGA	1 cut(s)	247
PkrI	GCNGC	1 cut(s)	180
PleI	GAGTC	2 cut(s)	44, 160
PpsI	GAGTC	2 cut(s)	44, 160
PshAI	GACNNNNGTC	1 cut(s)	92
Psp6I	CCWGG	1 cut(s)	247
PspGI	CCWGG	1 cut(s)	247
PspPI	GGNCC	1 cut(s)	421
RsaI	GTAC	1 cut(s)	66
RsaNI	GTAC	1 cut(s)	65
SatI	GCNGC	1 cut(s)	179
Sau3AI	GATC	2 cut(s)	211, 286
Sau96I	GGNCC	1 cut(s)	421
SchI	GAGTC	2 cut(s)	44, 160
ScrFI	CCNGG	1 cut(s)	249
SduI	GDGCHC	1 cut(s)	362
SetI	ASST	5 cut(s)	12, 73, 175, 194, 449
SfaNI	GCATC	3 cut(s)	253, 364, 452
SinI	GGWCC	1 cut(s)	421
Sse9I	AATT	2 cut(s)	311, 334
SsiI	CCGC	4 cut(s)	178, 270, 308, 322
SspMI	CTAG	2 cut(s)	137, 170
StyD4I	CCNGG	1 cut(s)	247
StyI	CCWWGG	1 cut(s)	258
TaaI	ACNGT	1 cut(s)	60
TaqI	TCGA	2 cut(s)	5, 194
TasI	AATT	2 cut(s)	311, 334
TauI	GCSGC	1 cut(s)	181
TfiI	GAWTC	1 cut(s)	151
TscAI	CASTG	1 cut(s)	423
TseFI	GTSAC	2 cut(s)	54, 163
Tsp45I	GTSAC	2 cut(s)	54, 163
TspRI	CASTG	1 cut(s)	423
VpaK11BI	GGWCC	1 cut(s)	421
XapI	RAATTY	1 cut(s)	311
XceI	RCATGY	1 cut(s)	411
XspI	CTAG	2 cut(s)	137, 170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.