Rorug02G0522300

Protein FAR1-RELATED SEQUENCE

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Forward (+)
65369190 .. 65373633
4444 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0522300.1

Sequence Viewer

Length: 651 bp
ATGGCCAAGACCAAACCTGGCAAGAAGGACCTTGACTCCTACAACATCAAGGGCACCAACAAAGCCGTTCGGGTTGGGGATTGTGTGTTGATGAGACCATCGGACACTGATAAGCCTCCATACGTGGCAAGGGTGGAGAAGCTTGAAGCTGATCACCGGAACAATGTGAAGGTTCGGGTTCGATGGTATTACCGGCCGGAGGAGTCGATAGGAGGAAGGAGACAGTTCCATGGAGCTAAGGAACTGTTTTTGTCGGACCACTTTGATGTGCAGAGTGCACACACTATCGAAGGGAAGTGTACAGTCCACTCCTTCAAGAACTACACTAAGCTTGAGAATGTGGGGGCTGAAGACTATTTTTGTAGGTTTGAGTATAAGGCTGCCACTGGTGGTTTCACACCGGACCGTGTGGCTGTGTATTGTAAATGTGAGATGCCATACAATCCGGACGACCTTATGGTGCAGTGTGAGGGATGCAAGGACTGGTTTCATCCCTCTTGTATGGGTATGGCCATTGAAGATGCCAAAAAGTTGGAACACTTCCTCTGTTCTGACTGTTCATCTGATGATGATGCCAAAAGATCCATGAATGCATTTCCAATGTCACCCTCTGTTGAGGCTAAGGTTGAGCCAAAGCGCCGGAAGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

216

Amino Acids

24.75

Weight (kDa)

8.45

Isoelectric Point (pI)

46.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BAH PF01426 23 - 134 4.8e-25 BAH domain
PHD PF00628 141 - 186 9.5e-09 PHD-finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000165)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38180
fragaria_vesca FvH4_1g09751 FvH4_1g09751 FvH4_1g09751 FvH4_1g12531 FvH4_1g19193 FvH4_2g07051 FvH4_2g17131 FvH4_2g17131 FvH4_2g28082 FvH4_5g08845 FvH4_5g26361 FvH4_5g26361 FvH4_5g26361 FvH4_5g26361 FvH4_5g39269 FvH4_6g36651 FvH4_6g38410 FvH4_7g04941 FvH4_7g04941
malus_domestica MD00G1156400.v1.1 MD02G1139600.v1.1 MD05G1144600.v1.1 MD06G1002400.v1.1 MD10G1143900.v1.1 MD15G1227300.v1.1 MD15G1252700.v1.1
prunus_persica Prupe.2G147900_v2.0.a1 Prupe.3G257900_v2.0.a1 Prupe.5G003600_v2.0.a1 Prupe.5G053800_v2.0.a1 Prupe.6G011300_v2.0.a1 Prupe.7G161400_v2.0.a1 Prupe.7G161500_v2.0.a1 Prupe.7G188000_v2.0.a1 Prupe.8G182700_v2.0.a1 Prupe.8G182700_v2.0.a1 Prupe.8G182700_v2.0.a1
pyrus_communis pycom02g11030 pycom05g13970 pycom06g00250 pycom10g12390 pycom10g12400 pycom15g20220 pycom15g22260 pycom17g05620
rosa_chinensis RchiOBHm_Chr2g0096701 RchiOBHm_Chr2g0100471 RchiOBHm_Chr2g0100481 RchiOBHm_Chr6g0281561 RchiOBHm_Chr7g0187081 RchiOBHm_Chr7g0217201 RchiOBHm_Chr7g0228321
rosa_laevigata RLG00000001574 RLG00000002527 RLG00000008169 RLG00000011104 RLG00000012963 RLG00000013720 RLG00000014615 RLG00000016663 RLG00000018214 RLG00000018621 RLG00000018622 RLG00000022494
rosa_multiflora Rmu_co8187762.1_g000001 Rmu_co8276569.1_g000001 Rmu_sc0000528.1_g000025 Rmu_sc0001095.1_g000001 Rmu_sc0001095.1_g000002 Rmu_sc0001167.1_g000007 Rmu_sc0001758.1_g000042 Rmu_sc0002147.1_g000004 Rmu_sc0002489.1_g000048 Rmu_sc0002564.1_g000015 Rmu_sc0002902.1_g000037 Rmu_sc0003565.1_g000022 Rmu_sc0003576.1_g000008 Rmu_sc0003720.1_g000022 Rmu_sc0003720.1_g000023 Rmu_sc0003862.1_g000023 Rmu_sc0006475.1_g000009 Rmu_sc0006475.1_g000010 Rmu_sc0006735.1_g000001 Rmu_sc0007586.1_g000004 Rmu_sc0009650.1_g000010 Rmu_sc0010963.1_g000005 Rmu_sc0012557.1_g000002 Rmu_sc0020744.1_g000001 Rmu_sc0020745.1_g000002 Rmu_sc0022201.1_g000001 Rmu_sc0022408.1_g000011 Rmu_sc0023414.1_g000001 Rmu_sc0025101.1_g000001 Rmu_ssc0000211.1_g000015 Rmu_ssc0000240.1_g000012
rosa_roxburghii Rroxscaffold_1G00013940 Rroxscaffold_1G00018420 Rroxscaffold_2G00142210 Rroxscaffold_2G00142230 Rroxscaffold_2G00145400 Rroxscaffold_3G00240120 Rroxscaffold_3G00240150 Rroxscaffold_3G00242500 Rroxscaffold_5G00346610 Rroxscaffold_5G00356000 Rroxscaffold_7G00187000 Rroxscaffold_7G00212120
rosa_rugosa Rorug01G0260900 Rorug01G0446900 Rorug02G0059800 Rorug02G0059900 Rorug02G0088400 Rorug02G0088500 Rorug02G0522300 Rorug03G0234100 Rorug03G0234100 Rorug03G0242400 Rorug04G0109900 Rorug04G0326100 Rorug05G0275900 Rorug06G0141600 Rorug06G0141700 Rorug06G0141700 Rorug07G0167200 Rorug07G0247000 Rorug07G0247000 Rorug07G0247100.1
rosa_samantha Rh1AG046800 Rh1AG111600 Rh1AG242600 Rh1CG226400 Rh1DG086400 Rh2AG107200 Rh2AG138100 Rh2AG528600 Rh2BG109600 Rh2BG141200 Rh2BG273400 Rh2BG357800 Rh2BG640200 Rh2CG111400 Rh2CG143400 Rh2CG161100 Rh2CG251300 Rh2DG111000 Rh2DG142900 Rh2DG651100 Rh3BG318000 Rh4AG167800 Rh4AG253700 Rh5AG282900 Rh6AG254100 Rh6BG257100 Rh6CG256400 Rh6DG248200 Rh7AG306100 Rh7BG297500 Rh7CG325200 Rh7CG420200 Rh7DG306000
rosa_wichuraiana Rw2G008310 Rw2G010790 Rw2G010800 Rw2G013840 Rw2G022430 Rw3G020550 Rw3G024980 Rw3G025930 Rw5G026810 Rw5G035870 Rw6G022060 Rw6G030700 Rw7G007420 Rw7G026010 Rw7G033340 Rw7G037700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 53
AccIII TCCGGA 1 cut(s) 445
AclWI GGATC 1 cut(s) 576
AcoI YGGCCR 3 cut(s) 3, 194, 510
AcuI CTGAAG 1 cut(s) 369
AfaI GTAC 1 cut(s) 301
AfiI CCNNNNNNNGG 1 cut(s) 199
AgsI TTSAA 3 cut(s) 146, 316, 518
AjnI CCWGG 1 cut(s) 16
AluBI AGCT 4 cut(s) 142, 149, 236, 331
AluI AGCT 4 cut(s) 142, 149, 236, 331
Alw21I GWGCWC 1 cut(s) 280
Alw26I GTCTC 2 cut(s) 88, 214
Alw44I GTGCAC 1 cut(s) 276
AlwI GGATC 1 cut(s) 576
Aor13HI TCCGGA 1 cut(s) 445
AoxI GGCC 3 cut(s) 3, 194, 510
ApaLI GTGCAC 1 cut(s) 276
ApeKI GCWGC 1 cut(s) 380
AspLEI GCGC 1 cut(s) 639
AspS9I GGNCC 3 cut(s) 28, 256, 403
AsuHPI GGTGA 2 cut(s) 146, 597
AvaII GGWCC 3 cut(s) 28, 256, 403
BaeGI GKGCMC 2 cut(s) 56, 280
BalI TGGCCA 2 cut(s) 5, 512
BanI GGYRCC 1 cut(s) 53
BbsI GAAGAC 1 cut(s) 357
Bbv12I GWGCWC 1 cut(s) 280
BbvI GCAGC 1 cut(s) 367
BccI CCATC 2 cut(s) 106, 177
BceAI ACGGC 1 cut(s) 50
BciT130I CCWGG 1 cut(s) 18
BclI TGATCA 1 cut(s) 151
BcoDI GTCTC 2 cut(s) 88, 214
BfoI RGCGCY 1 cut(s) 640
BisI GCNGC 1 cut(s) 381
BlsI GCNGC 1 cut(s) 382
Bme1390I CCNGG 1 cut(s) 18
Bme18I GGWCC 3 cut(s) 28, 256, 403
BmgT120I GGNCC 3 cut(s) 28, 256, 403
BmiI GGNNCC 1 cut(s) 55
BmrFI CCNGG 1 cut(s) 18
BmsI GCATC 4 cut(s) 423, 464, 511, 562
BpiI GAAGAC 1 cut(s) 357
Bpu10I CCTNAGC 2 cut(s) 237, 621
BpuEI CTTGAG 1 cut(s) 353
BsaAI YACGTR 1 cut(s) 124
BsaI GGTCTC 1 cut(s) 88
BsaJI CCNNGG 1 cut(s) 229
BsaWI WCCGGW 3 cut(s) 156, 400, 445
BsaXI ACNNNNNCTCC 2 cut(s) 20, 50
Bsc4I CCNNNNNNNGG 1 cut(s) 199
Bse118I RCCGGY 1 cut(s) 192
Bse1I ACTGG 2 cut(s) 391, 488
BseAI TCCGGA 1 cut(s) 445
BseBI CCWGG 1 cut(s) 18
BseDI CCNNGG 1 cut(s) 229
BseGI GGATG 2 cut(s) 479, 490
BseLI CCNNNNNNNGG 1 cut(s) 199
BseNI ACTGG 2 cut(s) 391, 488
BseRI GAGGAG 1 cut(s) 215
BseSI GKGCMC 2 cut(s) 56, 280
BseX3I CGGCCG 1 cut(s) 194
BseXI GCAGC 1 cut(s) 367
BsgI GTGCAG 2 cut(s) 290, 482
Bsh1285I CGRYCG 1 cut(s) 197
BshFI GGCC 3 cut(s) 5, 196, 512
BshNI GGYRCC 1 cut(s) 53
BsiEI CGRYCG 1 cut(s) 197
BsiHKAI GWGCWC 1 cut(s) 280
BsiSI CCGG 6 cut(s) 157, 193, 197, 401, 446, 640
BslI CCNNNNNNNGG 1 cut(s) 199
BsmAI GTCTC 2 cut(s) 88, 214
BsmI GAATGC 1 cut(s) 595
BsnI GGCC 3 cut(s) 5, 196, 512
Bso31I GGTCTC 1 cut(s) 88
Bsp1286I GDGCHC 2 cut(s) 56, 280
Bsp13I TCCGGA 1 cut(s) 445
Bsp1407I TGTACA 1 cut(s) 299
Bsp143I GATC 2 cut(s) 151, 581
Bsp19I CCATGG 1 cut(s) 229
BspANI GGCC 3 cut(s) 5, 196, 512
BspEI TCCGGA 1 cut(s) 445
BspLI GGNNCC 1 cut(s) 55
BspPI GGATC 1 cut(s) 576
BspT107I GGYRCC 1 cut(s) 53
BspTNI GGTCTC 1 cut(s) 88
BsrFI RCCGGY 1 cut(s) 192
BsrGI TGTACA 1 cut(s) 299
BsrI ACTGG 2 cut(s) 391, 488
BssAI RCCGGY 1 cut(s) 192
BssECI CCNNGG 1 cut(s) 229
BssMI GATC 2 cut(s) 151, 581
BssT1I CCWWGG 1 cut(s) 229
Bst2UI CCWGG 1 cut(s) 18
Bst4CI ACNGT 5 cut(s) 225, 246, 304, 407, 557
Bst6I CTCTTC 1 cut(s) 638
BstAUI TGTACA 1 cut(s) 299
BstBAI YACGTR 1 cut(s) 124
BstDEI CTNAG 3 cut(s) 237, 327, 621
BstDSI CCRYGG 1 cut(s) 229
BstF5I GGATG 2 cut(s) 479, 490
BstH2I RGCGCY 1 cut(s) 640
BstHHI GCGC 1 cut(s) 639
BstKTI GATC 2 cut(s) 154, 584
BstMAI GTCTC 2 cut(s) 88, 214
BstMBI GATC 2 cut(s) 151, 581
BstMCI CGRYCG 1 cut(s) 197
BstNI CCWGG 1 cut(s) 18
BstSCI CCNGG 1 cut(s) 16
BstSLI GKGCMC 2 cut(s) 56, 280
BstV1I GCAGC 1 cut(s) 367
BstV2I GAAGAC 1 cut(s) 357
BstX2I RGATCY 1 cut(s) 581
BstXI CCANNNNNNTGG 1 cut(s) 532
BstYI RGATCY 1 cut(s) 581
BstZI CGGCCG 1 cut(s) 194
BsuRI GGCC 3 cut(s) 5, 196, 512
BtgI CCRYGG 1 cut(s) 229
BtsCI GGATG 2 cut(s) 479, 490
BtsI GCAGTG 1 cut(s) 470
BtsIMutI CAGTG 3 cut(s) 105, 384, 470
CfoI GCGC 1 cut(s) 639
Cfr10I RCCGGY 1 cut(s) 192
Cfr13I GGNCC 3 cut(s) 28, 256, 403
CpoI CGGWCCG 1 cut(s) 403
Csp6I GTAC 1 cut(s) 300
CspI CGGWCCG 1 cut(s) 403
CviAII CATG 2 cut(s) 230, 586
CviQI GTAC 1 cut(s) 300
DdeI CTNAG 3 cut(s) 237, 327, 621
DpnI GATC 2 cut(s) 153, 583
DpnII GATC 2 cut(s) 151, 581
EaeI YGGCCR 3 cut(s) 3, 194, 510
EagI CGGCCG 1 cut(s) 194
Eam1104I CTCTTC 1 cut(s) 638
EarI CTCTTC 1 cut(s) 638
EclXI CGGCCG 1 cut(s) 194
Eco130I CCWWGG 1 cut(s) 229
Eco31I GGTCTC 1 cut(s) 88
Eco47I GGWCC 3 cut(s) 28, 256, 403
Eco52I CGGCCG 1 cut(s) 194
Eco57I CTGAAG 1 cut(s) 369
EcoO109I RGGNCCY 1 cut(s) 28
EcoRII CCWGG 1 cut(s) 16
EcoT14I CCWWGG 1 cut(s) 229
EcoT22I ATGCAT 1 cut(s) 595
ErhI CCWWGG 1 cut(s) 229
FaeI CATG 2 cut(s) 233, 589
FaiI YATR 8 cut(s) 121, 231, 375, 439, 458, 503, 509, 587
FatI CATG 2 cut(s) 229, 585
FbaI TGATCA 1 cut(s) 151
Fnu4HI GCNGC 1 cut(s) 381
FokI GGATG 2 cut(s) 477, 486
Fsp4HI GCNGC 1 cut(s) 381
GlaI GCGC 1 cut(s) 638
GluI GCNGC 1 cut(s) 381
HaeII RGCGCY 1 cut(s) 640
HaeIII GGCC 3 cut(s) 5, 196, 512
HapII CCGG 6 cut(s) 157, 193, 197, 401, 446, 640
HhaI GCGC 1 cut(s) 639
Hin1II CATG 2 cut(s) 233, 589
Hin6I GCGC 1 cut(s) 637
HinP1I GCGC 1 cut(s) 637
HindIII AAGCTT 2 cut(s) 140, 329
HinfI GANTC 2 cut(s) 35, 203
HpaII CCGG 6 cut(s) 157, 193, 197, 401, 446, 640
HphI GGTGA 2 cut(s) 146, 597
Hpy166II GTNNAC 3 cut(s) 278, 300, 307
Hpy188I TCNGA 4 cut(s) 103, 256, 553, 565
Hpy188III TCNNGA 2 cut(s) 316, 446
Hpy8I GTNNAC 3 cut(s) 278, 300, 307
HpyAV CCTTC 5 cut(s) 19, 163, 210, 284, 322
HpyCH4III ACNGT 5 cut(s) 225, 246, 304, 407, 557
HpyCH4IV ACGT 1 cut(s) 123
HpyCH4V TGCA 5 cut(s) 271, 278, 463, 477, 593
HpyF3I CTNAG 3 cut(s) 237, 327, 621
HpySE526I ACGT 1 cut(s) 123
Hsp92II CATG 2 cut(s) 233, 589
HspAI GCGC 1 cut(s) 637
Kpn2I TCCGGA 1 cut(s) 445
Ksp22I TGATCA 1 cut(s) 151
Kzo9I GATC 2 cut(s) 151, 581
LmnI GCTCC 1 cut(s) 233
LpnPI CCDG 9 cut(s) 3, 30, 170, 206, 210, 372, 414, 459, 469
Lsp1109I GCAGC 1 cut(s) 367
LweI GCATC 4 cut(s) 423, 464, 511, 562
MaeII ACGT 1 cut(s) 123
MaeIII GTNAC 1 cut(s) 603
MalI GATC 2 cut(s) 153, 583
MboI GATC 2 cut(s) 151, 581
MboII GAAGA 2 cut(s) 362, 530
MflI RGATCY 1 cut(s) 581
MhlI GDGCHC 2 cut(s) 56, 280
MlsI TGGCCA 2 cut(s) 5, 512
MluNI TGGCCA 2 cut(s) 5, 512
MlyI GAGTC 2 cut(s) 29, 212
MmeI TCCRAC 2 cut(s) 234, 513
MnlI CCTC 8 cut(s) 126, 193, 206, 463, 505, 554, 610, 619
Mox20I TGGCCA 2 cut(s) 5, 512
Mph1103I ATGCAT 1 cut(s) 595
MroI TCCGGA 1 cut(s) 445
MscI TGGCCA 2 cut(s) 5, 512
MslI CAYNNNNRTG 1 cut(s) 264
Msp20I TGGCCA 2 cut(s) 5, 512
MspI CCGG 6 cut(s) 157, 193, 197, 401, 446, 640
MspR9I CCNGG 1 cut(s) 18
Mva1269I GAATGC 1 cut(s) 595
MvaI CCWGG 1 cut(s) 18
NcoI CCATGG 1 cut(s) 229
NdeII GATC 2 cut(s) 151, 581
NlaIII CATG 2 cut(s) 233, 589
NlaIV GGNNCC 1 cut(s) 55
NmuCI GTSAC 1 cut(s) 603
NsiI ATGCAT 1 cut(s) 595
PctI GAATGC 1 cut(s) 595
PkrI GCNGC 1 cut(s) 382
PleI GAGTC 2 cut(s) 29, 211
PpsI GAGTC 2 cut(s) 29, 211
Ppu21I YACGTR 1 cut(s) 124
PpuMI RGGWCCY 1 cut(s) 28
Psp5II RGGWCCY 1 cut(s) 28
Psp6I CCWGG 1 cut(s) 16
PspGI CCWGG 1 cut(s) 16
PspN4I GGNNCC 1 cut(s) 55
PspPI GGNCC 3 cut(s) 28, 256, 403
PspPPI RGGWCCY 1 cut(s) 28
PsuI RGATCY 1 cut(s) 581
RsaI GTAC 1 cut(s) 301
RsaNI GTAC 1 cut(s) 300
RseI CAYNNNNRTG 1 cut(s) 264
Rsr2I CGGWCCG 1 cut(s) 403
RsrII CGGWCCG 1 cut(s) 403
SatI GCNGC 1 cut(s) 381
Sau3AI GATC 2 cut(s) 151, 581
Sau96I GGNCC 3 cut(s) 28, 256, 403
SchI GAGTC 2 cut(s) 29, 212
ScrFI CCNGG 1 cut(s) 18
SduI GDGCHC 2 cut(s) 56, 280
SfaNI GCATC 4 cut(s) 423, 464, 511, 562
SinI GGWCC 3 cut(s) 28, 256, 403
SmiMI CAYNNNNRTG 1 cut(s) 264
SmlI CTYRAG 1 cut(s) 332
SmoI CTYRAG 1 cut(s) 332
StyD4I CCNGG 1 cut(s) 16
StyI CCWWGG 1 cut(s) 229
TaaI ACNGT 5 cut(s) 225, 246, 304, 407, 557
TaiI ACGT 1 cut(s) 126
TaqI TCGA 3 cut(s) 181, 206, 288
TatI WGTACW 1 cut(s) 299
TscAI CASTG 3 cut(s) 112, 391, 470
TseFI GTSAC 1 cut(s) 603
TseI GCWGC 1 cut(s) 380
Tsp45I GTSAC 1 cut(s) 603
TspDTI ATGAA 3 cut(s) 479, 549, 602
TspRI CASTG 3 cut(s) 112, 391, 470
VneI GTGCAC 1 cut(s) 276
VpaK11BI GGWCC 3 cut(s) 28, 256, 403
Zsp2I ATGCAT 1 cut(s) 595
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.