Rroxscaffold_5G00356000

cyclic nucleotide-gated ion channel

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000165
Physical Location & Seq
Reverse (-)
35133524 .. 35161008
27485 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00356000.1

Sequence Viewer

Length: 465 bp
ATGAAGCGCCTTGAAAAAGATAAGGAAACTCAGGACATGTTAGAAAATTTGAACAAAATTGGTAACCAGTCCAACCGTGACATTCCAGTTAATGAAGGTCATGTTTTAGATCCACCATGTGCCAAGACTAAAGGAATGACAAATGAAAGAATCAAAGACATAAGGGAGAAAAAACAACGGAAGAATAAGAAAACAAAAGCAAATAGGCAAGACTATCTTACTAATTTCATTGAGTCTAAACATTGTAGGGATCAAGCTCAAGCGAGCCCTGTGCACATTGTGATTAGTGTCGTGGATACGGAAGAGATTATTGTGATCGTAATATATGCTTCCGCTGGAATTTTGAGATCTTGTTATCTAATATGGATGCAAAACTTTCATGTATATATGATGATGGTCATGCATGTTGATAATGATCATCGTGATGATAAAGATAATATTGGAGACGCTAGAGAACTCAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans

Protein Analysis

154

Amino Acids

17.98

Weight (kDa)

7.74

Isoelectric Point (pI)

45.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000165)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38180
fragaria_vesca FvH4_1g09751 FvH4_1g09751 FvH4_1g09751 FvH4_1g12531 FvH4_1g19193 FvH4_2g07051 FvH4_2g17131 FvH4_2g17131 FvH4_2g28082 FvH4_5g08845 FvH4_5g26361 FvH4_5g26361 FvH4_5g26361 FvH4_5g26361 FvH4_5g39269 FvH4_6g36651 FvH4_6g38410 FvH4_7g04941 FvH4_7g04941
malus_domestica MD00G1156400.v1.1 MD02G1139600.v1.1 MD05G1144600.v1.1 MD06G1002400.v1.1 MD10G1143900.v1.1 MD15G1227300.v1.1 MD15G1252700.v1.1
prunus_persica Prupe.2G147900_v2.0.a1 Prupe.3G257900_v2.0.a1 Prupe.5G003600_v2.0.a1 Prupe.5G053800_v2.0.a1 Prupe.6G011300_v2.0.a1 Prupe.7G161400_v2.0.a1 Prupe.7G161500_v2.0.a1 Prupe.7G188000_v2.0.a1 Prupe.8G182700_v2.0.a1 Prupe.8G182700_v2.0.a1 Prupe.8G182700_v2.0.a1
pyrus_communis pycom02g11030 pycom05g13970 pycom06g00250 pycom10g12390 pycom10g12400 pycom15g20220 pycom15g22260 pycom17g05620
rosa_chinensis RchiOBHm_Chr2g0096701 RchiOBHm_Chr2g0100471 RchiOBHm_Chr2g0100481 RchiOBHm_Chr6g0281561 RchiOBHm_Chr7g0187081 RchiOBHm_Chr7g0217201 RchiOBHm_Chr7g0228321
rosa_laevigata RLG00000001574 RLG00000002527 RLG00000008169 RLG00000011104 RLG00000012963 RLG00000013720 RLG00000014615 RLG00000016663 RLG00000018214 RLG00000018621 RLG00000018622 RLG00000022494
rosa_multiflora Rmu_co8187762.1_g000001 Rmu_co8276569.1_g000001 Rmu_sc0000528.1_g000025 Rmu_sc0001095.1_g000001 Rmu_sc0001095.1_g000002 Rmu_sc0001167.1_g000007 Rmu_sc0001758.1_g000042 Rmu_sc0002147.1_g000004 Rmu_sc0002489.1_g000048 Rmu_sc0002564.1_g000015 Rmu_sc0002902.1_g000037 Rmu_sc0003565.1_g000022 Rmu_sc0003576.1_g000008 Rmu_sc0003720.1_g000022 Rmu_sc0003720.1_g000023 Rmu_sc0003862.1_g000023 Rmu_sc0006475.1_g000009 Rmu_sc0006475.1_g000010 Rmu_sc0006735.1_g000001 Rmu_sc0007586.1_g000004 Rmu_sc0009650.1_g000010 Rmu_sc0010963.1_g000005 Rmu_sc0012557.1_g000002 Rmu_sc0020744.1_g000001 Rmu_sc0020745.1_g000002 Rmu_sc0022201.1_g000001 Rmu_sc0022408.1_g000011 Rmu_sc0023414.1_g000001 Rmu_sc0025101.1_g000001 Rmu_ssc0000211.1_g000015 Rmu_ssc0000240.1_g000012
rosa_roxburghii Rroxscaffold_1G00013940 Rroxscaffold_1G00018420 Rroxscaffold_2G00142210 Rroxscaffold_2G00142230 Rroxscaffold_2G00145400 Rroxscaffold_3G00240120 Rroxscaffold_3G00240150 Rroxscaffold_3G00242500 Rroxscaffold_5G00346610 Rroxscaffold_5G00356000 Rroxscaffold_7G00187000 Rroxscaffold_7G00212120
rosa_rugosa Rorug01G0260900 Rorug01G0446900 Rorug02G0059800 Rorug02G0059900 Rorug02G0088400 Rorug02G0088500 Rorug02G0522300 Rorug03G0234100 Rorug03G0234100 Rorug03G0242400 Rorug04G0109900 Rorug04G0326100 Rorug05G0275900 Rorug06G0141600 Rorug06G0141700 Rorug06G0141700 Rorug07G0167200 Rorug07G0247000 Rorug07G0247000 Rorug07G0247100.1
rosa_samantha Rh1AG046800 Rh1AG111600 Rh1AG242600 Rh1CG226400 Rh1DG086400 Rh2AG107200 Rh2AG138100 Rh2AG528600 Rh2BG109600 Rh2BG141200 Rh2BG273400 Rh2BG357800 Rh2BG640200 Rh2CG111400 Rh2CG143400 Rh2CG161100 Rh2CG251300 Rh2DG111000 Rh2DG142900 Rh2DG651100 Rh3BG318000 Rh4AG167800 Rh4AG253700 Rh5AG282900 Rh6AG254100 Rh6BG257100 Rh6CG256400 Rh6DG248200 Rh7AG306100 Rh7BG297500 Rh7CG325200 Rh7CG420200 Rh7DG306000
rosa_wichuraiana Rw2G008310 Rw2G010790 Rw2G010800 Rw2G013840 Rw2G022430 Rw3G020550 Rw3G024980 Rw3G025930 Rw5G026810 Rw5G035870 Rw6G022060 Rw6G030700 Rw7G007420 Rw7G026010 Rw7G033340 Rw7G037700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 333
AclWI GGATC 2 cut(s) 104, 258
AcsI RAATTY 2 cut(s) 46, 339
AdeI CACNNNGTG 2 cut(s) 119, 280
AflIII ACRYGT 1 cut(s) 36
AgsI TTSAA 2 cut(s) 14, 52
AluBI AGCT 1 cut(s) 257
AluI AGCT 1 cut(s) 257
Alw21I GWGCWC 1 cut(s) 276
Alw26I GTCTC 1 cut(s) 438
Alw44I GTGCAC 1 cut(s) 272
AlwI GGATC 2 cut(s) 104, 258
ApaLI GTGCAC 1 cut(s) 272
ApoI RAATTY 2 cut(s) 46, 339
AspLEI GCGC 1 cut(s) 9
BaeGI GKGCMC 1 cut(s) 276
BanII GRGCYC 1 cut(s) 269
Bbv12I GWGCWC 1 cut(s) 276
BccI CCATC 1 cut(s) 388
BcgI CGANNNNNNTGC 2 cut(s) 253, 287
BciVI GTATCC 1 cut(s) 289
BclI TGATCA 1 cut(s) 415
BcoDI GTCTC 1 cut(s) 438
BfaI CTAG 1 cut(s) 450
BfoI RGCGCY 1 cut(s) 10
BfuI GTATCC 1 cut(s) 289
BglII AGATCT 1 cut(s) 347
BmsI GCATC 1 cut(s) 357
BpuEI CTTGAG 1 cut(s) 243
BsaBI GATNNNNATC 1 cut(s) 414
Bse1I ACTGG 2 cut(s) 67, 86
Bse8I GATNNNNATC 1 cut(s) 414
BseGI GGATG 1 cut(s) 372
BseJI GATNNNNATC 1 cut(s) 414
BseMII CTCAG 1 cut(s) 44
BseNI ACTGG 2 cut(s) 67, 86
BseSI GKGCMC 1 cut(s) 276
BsiHKAI GWGCWC 1 cut(s) 276
BsmAI GTCTC 1 cut(s) 438
BsmBI CGTCTC 1 cut(s) 438
Bsp1286I GDGCHC 2 cut(s) 269, 276
Bsp143I GATC 5 cut(s) 109, 250, 315, 347, 415
BspACI CCGC 1 cut(s) 333
BspCNI CTCAG 1 cut(s) 43
BspPI GGATC 2 cut(s) 104, 258
BsrI ACTGG 2 cut(s) 67, 86
BssMI GATC 5 cut(s) 109, 250, 315, 347, 415
Bst4CI ACNGT 1 cut(s) 77
Bst6I CTCTTC 1 cut(s) 297
BstC8I GCNNGC 1 cut(s) 265
BstDEI CTNAG 1 cut(s) 30
BstEII GGTNACC 1 cut(s) 62
BstF5I GGATG 1 cut(s) 372
BstH2I RGCGCY 1 cut(s) 10
BstHHI GCGC 1 cut(s) 9
BstKTI GATC 5 cut(s) 112, 253, 318, 350, 418
BstMAI GTCTC 1 cut(s) 438
BstMBI GATC 5 cut(s) 109, 250, 315, 347, 415
BstNSI RCATGY 2 cut(s) 40, 407
BstPI GGTNACC 1 cut(s) 62
BstSLI GKGCMC 1 cut(s) 276
BstX2I RGATCY 2 cut(s) 109, 347
BstYI RGATCY 2 cut(s) 109, 347
BsuI GTATCC 1 cut(s) 289
BtsCI GGATG 1 cut(s) 372
Cac8I GCNNGC 1 cut(s) 265
CfoI GCGC 1 cut(s) 9
CseI GACGC 1 cut(s) 455
CviAII CATG 6 cut(s) 37, 101, 117, 380, 400, 404
CviJI RGCY 2 cut(s) 257, 267
CviKI_1 RGCY 2 cut(s) 257, 267
DdeI CTNAG 1 cut(s) 30
DpnI GATC 5 cut(s) 111, 252, 317, 349, 417
DpnII GATC 5 cut(s) 109, 250, 315, 347, 415
DraIII CACNNNGTG 2 cut(s) 119, 280
Eam1104I CTCTTC 1 cut(s) 297
EarI CTCTTC 1 cut(s) 297
Eco24I GRGCYC 1 cut(s) 269
Eco91I GGTNACC 1 cut(s) 62
EcoO65I GGTNACC 1 cut(s) 62
EcoT22I ATGCAT 1 cut(s) 405
EcoT38I GRGCYC 1 cut(s) 269
Esp3I CGTCTC 1 cut(s) 438
FaeI CATG 6 cut(s) 40, 104, 120, 383, 403, 407
FalI AAGNNNNNCTT 2 cut(s) 201, 233
FatI CATG 6 cut(s) 36, 100, 116, 379, 399, 403
FbaI TGATCA 1 cut(s) 415
FokI GGATG 1 cut(s) 379
FriOI GRGCYC 1 cut(s) 269
FspBI CTAG 1 cut(s) 450
GlaI GCGC 1 cut(s) 8
HaeII RGCGCY 1 cut(s) 10
HgaI GACGC 1 cut(s) 455
HhaI GCGC 1 cut(s) 9
Hin1II CATG 6 cut(s) 40, 104, 120, 383, 403, 407
Hin6I GCGC 1 cut(s) 7
HinP1I GCGC 1 cut(s) 7
HinfI GANTC 2 cut(s) 150, 233
Hpy166II GTNNAC 1 cut(s) 274
Hpy188III TCNNGA 2 cut(s) 32, 422
Hpy8I GTNNAC 1 cut(s) 274
HpyAV CCTTC 1 cut(s) 89
HpyCH4III ACNGT 1 cut(s) 77
HpyCH4V TGCA 3 cut(s) 274, 370, 403
HpyF3I CTNAG 1 cut(s) 30
Hsp92II CATG 6 cut(s) 40, 104, 120, 383, 403, 407
HspAI GCGC 1 cut(s) 7
Ksp22I TGATCA 1 cut(s) 415
Kzo9I GATC 5 cut(s) 109, 250, 315, 347, 415
LpnPI CCDG 5 cut(s) 17, 80, 99, 282, 321
LweI GCATC 1 cut(s) 357
MaeI CTAG 1 cut(s) 450
MaeIII GTNAC 2 cut(s) 62, 77
MalI GATC 5 cut(s) 111, 252, 317, 349, 417
MboI GATC 5 cut(s) 109, 250, 315, 347, 415
MboII GAAGA 2 cut(s) 193, 314
MflI RGATCY 2 cut(s) 109, 347
MhlI GDGCHC 2 cut(s) 269, 276
MluCI AATT 5 cut(s) 46, 57, 223, 339, 460
MlyI GAGTC 1 cut(s) 242
MmeI TCCRAC 1 cut(s) 96
Mph1103I ATGCAT 1 cut(s) 405
MseI TTAA 1 cut(s) 90
MslI CAYNNNNRTG 1 cut(s) 423
MspA1I CMGCKG 1 cut(s) 335
NdeII GATC 5 cut(s) 109, 250, 315, 347, 415
NlaIII CATG 6 cut(s) 40, 104, 120, 383, 403, 407
NmuCI GTSAC 1 cut(s) 77
NsiI ATGCAT 1 cut(s) 405
NspI RCATGY 2 cut(s) 40, 407
PciI ACATGT 1 cut(s) 36
PfeI GAWTC 1 cut(s) 150
PleI GAGTC 1 cut(s) 241
PpsI GAGTC 1 cut(s) 241
PscI ACATGT 1 cut(s) 36
PspEI GGTNACC 1 cut(s) 62
PsuI RGATCY 2 cut(s) 109, 347
RseI CAYNNNNRTG 1 cut(s) 423
SaqAI TTAA 1 cut(s) 90
Sau3AI GATC 5 cut(s) 109, 250, 315, 347, 415
SchI GAGTC 1 cut(s) 242
SduI GDGCHC 2 cut(s) 269, 276
SetI ASST 2 cut(s) 100, 259
SfaNI GCATC 1 cut(s) 357
SmiMI CAYNNNNRTG 1 cut(s) 423
SmlI CTYRAG 1 cut(s) 258
SmoI CTYRAG 1 cut(s) 258
Sse9I AATT 5 cut(s) 46, 57, 223, 339, 460
SsiI CCGC 1 cut(s) 333
SspI AATATT 1 cut(s) 439
SspMI CTAG 1 cut(s) 450
TaaI ACNGT 1 cut(s) 77
TasI AATT 5 cut(s) 46, 57, 223, 339, 460
TfiI GAWTC 1 cut(s) 150
Tru1I TTAA 1 cut(s) 90
Tru9I TTAA 1 cut(s) 90
TseFI GTSAC 1 cut(s) 77
Tsp45I GTSAC 1 cut(s) 77
TspDTI ATGAA 5 cut(s) 17, 108, 159, 217, 368
TspGWI ACGGA 2 cut(s) 193, 314
VneI GTGCAC 1 cut(s) 272
XapI RAATTY 2 cut(s) 46, 339
XceI RCATGY 2 cut(s) 40, 407
XspI CTAG 1 cut(s) 450
Zsp2I ATGCAT 1 cut(s) 405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.