Rmu_sc0001758.1_g000042

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001758.1
OG0000165
Physical Location & Seq
Reverse (-)
217847 .. 218893
1047 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001758.1_g000042.1.cds

Sequence Viewer

Length: 1047 bp
atgaagataaagcaatggcaaaagcaattgagcaagtttttccaggtacacagcatcggttatgcacttggcatatttctaagaatgctggaaagagaattggtagttaccttgcaaatcctgagttcaagaaacaattcaagcttacatagctgtagtactgaaactgaatttcaagcttcatgggatgatatgatcagtagatataatcttggtggtaatacatggcttgagaagttgtattcgctccgggagaaatggtgtccagtttttagtttggataccttttcagcaaaaattagatcaactcaaaggagtgaaagtactaacaatgtgttccatcaaatctctacacacacaatggagctcatcaaatttgtgcatcactgtgagaaaaaaattgaagagatgcgtttggcggagttggaagatgactatcgatgcaaaaatggtacacctcgtccccaagtgtggagtagaatgttaaggagagcagctaaagtgtataccattaaaatgtttcagctatttgaaacagagtttgttggctgtatgggagttagactaaaagaagcttttaagagggatgaagtacattcatatgaagcaattgaagatggtaaacaaagtgtacacaagattcaatataactctatatccttcgacatttcttgttcttgcaagtcttttgaatcacttggaatcttgtgtcgtcatgctttgaaggtgtctgatatcaataatgtcactgttttacccactcaatatatattgaagaggtggactagagaagcaaagaaagggattgtggtaagcaataacatttctggaggtacaagtgagaataaaaagtctgctagattgttgcgccttagtgagctaatgcatgaaggaaatagtgtttatgacatagcttcattgagttgctcagggactaagattgtgaaggagctgttagtaaaggcaatgaagcgtcttgagaaagacaaggaaactcaagacatgttggaaaatttgaacaaagttggtaatcagtccaatctttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE PEARLI-4 SWIM

Protein Analysis

348

Amino Acids

40.26

Weight (kDa)

9.2

Isoelectric Point (pI)

42.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000165)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38180
fragaria_vesca FvH4_1g09751 FvH4_1g09751 FvH4_1g09751 FvH4_1g12531 FvH4_1g19193 FvH4_2g07051 FvH4_2g17131 FvH4_2g17131 FvH4_2g28082 FvH4_5g08845 FvH4_5g26361 FvH4_5g26361 FvH4_5g26361 FvH4_5g26361 FvH4_5g39269 FvH4_6g36651 FvH4_6g38410 FvH4_7g04941 FvH4_7g04941
malus_domestica MD00G1156400.v1.1 MD02G1139600.v1.1 MD05G1144600.v1.1 MD06G1002400.v1.1 MD10G1143900.v1.1 MD15G1227300.v1.1 MD15G1252700.v1.1
prunus_persica Prupe.2G147900_v2.0.a1 Prupe.3G257900_v2.0.a1 Prupe.5G003600_v2.0.a1 Prupe.5G053800_v2.0.a1 Prupe.6G011300_v2.0.a1 Prupe.7G161400_v2.0.a1 Prupe.7G161500_v2.0.a1 Prupe.7G188000_v2.0.a1 Prupe.8G182700_v2.0.a1 Prupe.8G182700_v2.0.a1 Prupe.8G182700_v2.0.a1
pyrus_communis pycom02g11030 pycom05g13970 pycom06g00250 pycom10g12390 pycom10g12400 pycom15g20220 pycom15g22260 pycom17g05620
rosa_chinensis RchiOBHm_Chr2g0096701 RchiOBHm_Chr2g0100471 RchiOBHm_Chr2g0100481 RchiOBHm_Chr6g0281561 RchiOBHm_Chr7g0187081 RchiOBHm_Chr7g0217201 RchiOBHm_Chr7g0228321
rosa_laevigata RLG00000001574 RLG00000002527 RLG00000008169 RLG00000011104 RLG00000012963 RLG00000013720 RLG00000014615 RLG00000016663 RLG00000018214 RLG00000018621 RLG00000018622 RLG00000022494
rosa_multiflora Rmu_co8187762.1_g000001 Rmu_co8276569.1_g000001 Rmu_sc0000528.1_g000025 Rmu_sc0001095.1_g000001 Rmu_sc0001095.1_g000002 Rmu_sc0001167.1_g000007 Rmu_sc0001758.1_g000042 Rmu_sc0002147.1_g000004 Rmu_sc0002489.1_g000048 Rmu_sc0002564.1_g000015 Rmu_sc0002902.1_g000037 Rmu_sc0003565.1_g000022 Rmu_sc0003576.1_g000008 Rmu_sc0003720.1_g000022 Rmu_sc0003720.1_g000023 Rmu_sc0003862.1_g000023 Rmu_sc0006475.1_g000009 Rmu_sc0006475.1_g000010 Rmu_sc0006735.1_g000001 Rmu_sc0007586.1_g000004 Rmu_sc0009650.1_g000010 Rmu_sc0010963.1_g000005 Rmu_sc0012557.1_g000002 Rmu_sc0020744.1_g000001 Rmu_sc0020745.1_g000002 Rmu_sc0022201.1_g000001 Rmu_sc0022408.1_g000011 Rmu_sc0023414.1_g000001 Rmu_sc0025101.1_g000001 Rmu_ssc0000211.1_g000015 Rmu_ssc0000240.1_g000012
rosa_roxburghii Rroxscaffold_1G00013940 Rroxscaffold_1G00018420 Rroxscaffold_2G00142210 Rroxscaffold_2G00142230 Rroxscaffold_2G00145400 Rroxscaffold_3G00240120 Rroxscaffold_3G00240150 Rroxscaffold_3G00242500 Rroxscaffold_5G00346610 Rroxscaffold_5G00356000 Rroxscaffold_7G00187000 Rroxscaffold_7G00212120
rosa_rugosa Rorug01G0260900 Rorug01G0446900 Rorug02G0059800 Rorug02G0059900 Rorug02G0088400 Rorug02G0088500 Rorug02G0522300 Rorug03G0234100 Rorug03G0234100 Rorug03G0242400 Rorug04G0109900 Rorug04G0326100 Rorug05G0275900 Rorug06G0141600 Rorug06G0141700 Rorug06G0141700 Rorug07G0167200 Rorug07G0247000 Rorug07G0247000 Rorug07G0247100.1
rosa_samantha Rh1AG046800 Rh1AG111600 Rh1AG242600 Rh1CG226400 Rh1DG086400 Rh2AG107200 Rh2AG138100 Rh2AG528600 Rh2BG109600 Rh2BG141200 Rh2BG273400 Rh2BG357800 Rh2BG640200 Rh2CG111400 Rh2CG143400 Rh2CG161100 Rh2CG251300 Rh2DG111000 Rh2DG142900 Rh2DG651100 Rh3BG318000 Rh4AG167800 Rh4AG253700 Rh5AG282900 Rh6AG254100 Rh6BG257100 Rh6CG256400 Rh6DG248200 Rh7AG306100 Rh7BG297500 Rh7CG325200 Rh7CG420200 Rh7DG306000
rosa_wichuraiana Rw2G008310 Rw2G010790 Rw2G010800 Rw2G013840 Rw2G022430 Rw3G020550 Rw3G024980 Rw3G025930 Rw5G026810 Rw5G035870 Rw6G022060 Rw6G030700 Rw7G007420 Rw7G026010 Rw7G033340 Rw7G037700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 506
AciI CCGC 1 cut(s) 419
AcsI RAATTY 3 cut(s) 170, 374, 1012
AfaI GTAC 7 cut(s) 48, 160, 325, 454, 594, 633, 835
AfiI CCNNNNNNNGG 1 cut(s) 471
AflIII ACRYGT 1 cut(s) 1002
AjnI CCWGG 1 cut(s) 42
Alw21I GWGCWC 1 cut(s) 369
ApeKI GCWGC 1 cut(s) 494
ApoI RAATTY 3 cut(s) 170, 374, 1012
Asp700I GAANNNNTTC 1 cut(s) 136
AspLEI GCGC 1 cut(s) 870
AsuC2I CCSGG 1 cut(s) 251
BanII GRGCYC 1 cut(s) 369
Bbv12I GWGCWC 1 cut(s) 369
BbvI GCAGC 1 cut(s) 506
BccI CCATC 2 cut(s) 348, 611
BciT130I CCWGG 1 cut(s) 44
BciVI GTATCC 1 cut(s) 274
BclI TGATCA 1 cut(s) 195
BcnI CCSGG 1 cut(s) 251
BfaI CTAG 2 cut(s) 786, 858
BfmI CTRYAG 1 cut(s) 154
BfuI GTATCC 1 cut(s) 274
BisI GCNGC 1 cut(s) 495
BlsI GCNGC 1 cut(s) 496
BmcAI AGTACT 2 cut(s) 160, 325
Bme1390I CCNGG 2 cut(s) 44, 251
BmrFI CCNGG 2 cut(s) 44, 251
BmsI GCATC 4 cut(s) 63, 391, 399, 431
BpmI CTGGAG 1 cut(s) 849
Bpu10I CCTNAGC 1 cut(s) 928
BpuEI CTTGAG 3 cut(s) 251, 981, 998
BpuMI CCSGG 1 cut(s) 251
Bsa29I ATCGAT 1 cut(s) 439
BsaBI GATNNNNATC 1 cut(s) 435
BsaXI ACNNNNNCTCC 4 cut(s) 245, 275, 307, 337
Bsc4I CCNNNNNNNGG 1 cut(s) 471
Bse1I ACTGG 1 cut(s) 266
Bse3DI GCAATG 2 cut(s) 20, 972
Bse8I GATNNNNATC 1 cut(s) 435
BseBI CCWGG 1 cut(s) 44
BseCI ATCGAT 1 cut(s) 439
BseGI GGATG 2 cut(s) 193, 592
BseJI GATNNNNATC 1 cut(s) 435
BseLI CCNNNNNNNGG 1 cut(s) 471
BseMI GCAATG 2 cut(s) 20, 972
BseMII CTCAG 2 cut(s) 113, 942
BseNI ACTGG 1 cut(s) 266
BseXI GCAGC 1 cut(s) 506
BshVI ATCGAT 1 cut(s) 439
BsiHKAI GWGCWC 1 cut(s) 369
BsiSI CCGG 1 cut(s) 250
BslFI GGGAC 2 cut(s) 447, 946
BslI CCNNNNNNNGG 1 cut(s) 471
BsmFI GGGAC 2 cut(s) 447, 946
BsmI GAATGC 1 cut(s) 90
Bsp1286I GDGCHC 1 cut(s) 369
Bsp1407I TGTACA 1 cut(s) 631
Bsp143I GATC 2 cut(s) 195, 302
BspACI CCGC 1 cut(s) 419
BspCNI CTCAG 2 cut(s) 114, 941
BspDI ATCGAT 1 cut(s) 439
BsrDI GCAATG 2 cut(s) 20, 972
BsrGI TGTACA 1 cut(s) 631
BsrI ACTGG 1 cut(s) 266
BssMI GATC 2 cut(s) 195, 302
BssNAI GTATAC 1 cut(s) 507
Bst1107I GTATAC 1 cut(s) 507
Bst2UI CCWGG 1 cut(s) 44
Bst4CI ACNGT 2 cut(s) 389, 751
Bst6I CTCTTC 2 cut(s) 399, 770
BstAUI TGTACA 1 cut(s) 631
BstDEI CTNAG 5 cut(s) 80, 122, 872, 928, 936
BstF5I GGATG 2 cut(s) 193, 592
BstHHI GCGC 1 cut(s) 870
BstKTI GATC 2 cut(s) 198, 305
BstMBI GATC 2 cut(s) 195, 302
BstMWI GCNNNNNNNGC 1 cut(s) 150
BstNI CCWGG 1 cut(s) 44
BstNSI RCATGY 1 cut(s) 1006
BstSCI CCNGG 2 cut(s) 42, 249
BstSFI CTRYAG 1 cut(s) 154
BstV1I GCAGC 1 cut(s) 506
BstZ17I GTATAC 1 cut(s) 507
Bsu15I ATCGAT 1 cut(s) 439
BsuI GTATCC 1 cut(s) 274
BsuTUI ATCGAT 1 cut(s) 439
BtsCI GGATG 2 cut(s) 193, 592
BtsIMutI CAGTG 2 cut(s) 385, 747
CfoI GCGC 1 cut(s) 870
ClaI ATCGAT 1 cut(s) 439
CseI GACGC 1 cut(s) 962
Csp6I GTAC 7 cut(s) 47, 159, 324, 453, 593, 632, 834
CviAII CATG 5 cut(s) 183, 225, 716, 887, 1003
CviQI GTAC 7 cut(s) 47, 159, 324, 453, 593, 632, 834
DdeI CTNAG 5 cut(s) 80, 122, 872, 928, 936
DpnI GATC 2 cut(s) 197, 304
DpnII GATC 2 cut(s) 195, 302
Eam1104I CTCTTC 2 cut(s) 399, 770
EarI CTCTTC 2 cut(s) 399, 770
EciI GGCGGA 1 cut(s) 434
Ecl136II GAGCTC 1 cut(s) 367
Eco24I GRGCYC 1 cut(s) 369
Eco32I GATATC 1 cut(s) 736
Eco53kI GAGCTC 1 cut(s) 367
EcoICRI GAGCTC 1 cut(s) 367
EcoRII CCWGG 1 cut(s) 42
EcoRV GATATC 1 cut(s) 736
EcoT22I ATGCAT 1 cut(s) 888
EcoT38I GRGCYC 1 cut(s) 369
FaeI CATG 5 cut(s) 186, 228, 719, 890, 1006
FaqI GGGAC 2 cut(s) 447, 946
FatI CATG 5 cut(s) 182, 224, 715, 886, 1002
FauNDI CATATG 1 cut(s) 601
FbaI TGATCA 1 cut(s) 195
FblI GTMKAC 1 cut(s) 506
Fnu4HI GCNGC 1 cut(s) 495
FokI GGATG 2 cut(s) 200, 599
FriOI GRGCYC 1 cut(s) 369
Fsp4HI GCNGC 1 cut(s) 495
FspBI CTAG 2 cut(s) 786, 858
GlaI GCGC 1 cut(s) 869
GluI GCNGC 1 cut(s) 495
GsuI CTGGAG 1 cut(s) 849
HapII CCGG 1 cut(s) 250
HgaI GACGC 1 cut(s) 962
HhaI GCGC 1 cut(s) 870
Hin1II CATG 5 cut(s) 186, 228, 719, 890, 1006
Hin6I GCGC 1 cut(s) 868
HinP1I GCGC 1 cut(s) 868
HindIII AAGCTT 3 cut(s) 142, 177, 573
HinfI GANTC 3 cut(s) 640, 692, 702
HpaII CCGG 1 cut(s) 250
Hpy166II GTNNAC 7 cut(s) 49, 455, 507, 623, 632, 634, 783
Hpy188I TCNGA 1 cut(s) 733
Hpy188III TCNNGA 5 cut(s) 121, 129, 828, 977, 998
Hpy8I GTNNAC 7 cut(s) 49, 455, 507, 623, 632, 634, 783
HpyAV CCTTC 4 cut(s) 670, 718, 884, 940
HpyCH4III ACNGT 2 cut(s) 389, 751
HpyCH4V TGCA 6 cut(s) 65, 115, 382, 444, 681, 886
HpyF10VI GCNNNNNNNGC 1 cut(s) 150
HpyF3I CTNAG 5 cut(s) 80, 122, 872, 928, 936
Hsp92II CATG 5 cut(s) 186, 228, 719, 890, 1006
HspAI GCGC 1 cut(s) 868
Ksp22I TGATCA 1 cut(s) 195
Kzo9I GATC 2 cut(s) 195, 302
LmnI GCTCC 3 cut(s) 252, 364, 949
LpnPI CCDG 8 cut(s) 29, 56, 74, 134, 263, 279, 813, 915
Lsp1109I GCAGC 1 cut(s) 506
LweI GCATC 4 cut(s) 63, 391, 399, 431
MaeI CTAG 2 cut(s) 786, 858
MaeIII GTNAC 2 cut(s) 106, 745
MalI GATC 2 cut(s) 197, 304
MboI GATC 2 cut(s) 195, 302
MboII GAAGA 5 cut(s) 16, 416, 440, 626, 787
MfeI CAATTG 2 cut(s) 26, 609
MhlI GDGCHC 1 cut(s) 369
MluCI AATT 9 cut(s) 26, 98, 136, 170, 297, 374, 399, 609, 1012
MmeI TCCRAC 2 cut(s) 405, 987
MnlI CCTC 4 cut(s) 468, 576, 771, 824
Mph1103I ATGCAT 1 cut(s) 888
MroXI GAANNNNTTC 1 cut(s) 136
MseI TTAA 3 cut(s) 485, 513, 579
MslI CAYNNNNRTG 3 cut(s) 387, 515, 600
MspI CCGG 1 cut(s) 250
MspR9I CCNGG 2 cut(s) 44, 251
MunI CAATTG 2 cut(s) 26, 609
Mva1269I GAATGC 1 cut(s) 90
MvaI CCWGG 1 cut(s) 44
MwoI GCNNNNNNNGC 1 cut(s) 150
NciI CCSGG 1 cut(s) 251
NdeI CATATG 1 cut(s) 601
NdeII GATC 2 cut(s) 195, 302
NlaIII CATG 5 cut(s) 186, 228, 719, 890, 1006
NmuCI GTSAC 1 cut(s) 745
NsiI ATGCAT 1 cut(s) 888
NspI RCATGY 1 cut(s) 1006
PciI ACATGT 1 cut(s) 1002
PctI GAATGC 1 cut(s) 90
PdmI GAANNNNTTC 1 cut(s) 136
PfeI GAWTC 3 cut(s) 640, 692, 702
PfoI TCCNGGA 1 cut(s) 249
PkrI GCNGC 1 cut(s) 496
PscI ACATGT 1 cut(s) 1002
Psp124BI GAGCTC 1 cut(s) 369
Psp6I CCWGG 1 cut(s) 42
PspGI CCWGG 1 cut(s) 42
RsaI GTAC 7 cut(s) 48, 160, 325, 454, 594, 633, 835
RsaNI GTAC 7 cut(s) 47, 159, 324, 453, 593, 632, 834
RseI CAYNNNNRTG 3 cut(s) 387, 515, 600
SacI GAGCTC 1 cut(s) 369
SaqAI TTAA 3 cut(s) 485, 513, 579
SatI GCNGC 1 cut(s) 495
Sau3AI GATC 2 cut(s) 195, 302
ScaI AGTACT 2 cut(s) 160, 325
ScrFI CCNGG 2 cut(s) 44, 251
SduI GDGCHC 1 cut(s) 369
SfaNI GCATC 4 cut(s) 63, 391, 399, 431
SfcI CTRYAG 1 cut(s) 154
SmiMI CAYNNNNRTG 3 cut(s) 387, 515, 600
SmlI CTYRAG 3 cut(s) 230, 977, 996
SmoI CTYRAG 3 cut(s) 230, 977, 996
Sse9I AATT 9 cut(s) 26, 98, 136, 170, 297, 374, 399, 609, 1012
SsiI CCGC 1 cut(s) 419
SspMI CTAG 2 cut(s) 786, 858
SstI GAGCTC 1 cut(s) 369
StyD4I CCNGG 2 cut(s) 42, 249
TaaI ACNGT 2 cut(s) 389, 751
TaqI TCGA 2 cut(s) 439, 663
TasI AATT 9 cut(s) 26, 98, 136, 170, 297, 374, 399, 609, 1012
TatI WGTACW 4 cut(s) 158, 323, 592, 631
TfiI GAWTC 3 cut(s) 640, 692, 702
Tru1I TTAA 3 cut(s) 485, 513, 579
Tru9I TTAA 3 cut(s) 485, 513, 579
TscAI CASTG 2 cut(s) 392, 754
TseFI GTSAC 1 cut(s) 745
TseI GCWGC 1 cut(s) 494
Tsp45I GTSAC 1 cut(s) 745
TspDTI ATGAA 8 cut(s) 17, 171, 588, 603, 618, 903, 906, 983
TspRI CASTG 2 cut(s) 392, 754
XapI RAATTY 3 cut(s) 170, 374, 1012
XceI RCATGY 1 cut(s) 1006
XmiI GTMKAC 1 cut(s) 506
XmnI GAANNNNTTC 1 cut(s) 136
XspI CTAG 2 cut(s) 786, 858
ZrmI AGTACT 2 cut(s) 160, 325
Zsp2I ATGCAT 1 cut(s) 888
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.