FvH4_5g39269

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000165
Physical Location & Seq
Reverse (-)
29009442 .. 29010836
1395 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g39269.t1

Sequence Viewer

Length: 621 bp
ATGAGTCTGAGAGTTCACAAGCATGGCATATTTGGGGTTAGGCTTAGCAATCCCTCTTTGGCTCTTAGTGATAGTGATGAGTGGAACAGAGGGAAGATGAGAGCTGGTACAGCGGCGATAAGTGCTGCTGTGACTGATTGGGAATGGGTATTTGGAGTAAGTGCTGCCGTGATTATTCAGAAATTTTTCAGTCCTGCCGGAGAACCACTGATTGACATAGAGGACGATGAGGAAGATATCATGACATCTGATTTGGAGAAACATCCGATGATTGTGAATCGTCAAGCTAGTAATGATGAAAATTTGTTTGGAGTAACGGTGAATAGCGAGGAAGAAGCATACAACCTCTACTGTGAGTATGGTGTCAGAATAGGGTTTAGTGTTTGGATAGACAAGAGGAGGAAAACCAACAATGTTGTCAGGCAAGTGAATTATTGTTGTTCCAAAGAAGGTTTTAAACTAGACAGTGACCCTTCAGAAGTGAACAAGACTCACAGGCTTGAAACTAGAACCGGTTGCCCGGCGAAAATTCGATTCGGATTGCAAGAGAATAATTTATGGAAAGTGACTCTCTTTGTTCCTGAACACAACCACAGACTTGCAGACCCAGAAGAAAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE PEARLI-4 SWIM

Protein Analysis

207

Amino Acids

23.46

Weight (kDa)

5.43

Isoelectric Point (pI)

40.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 116 - 201 2.7e-21 FAR1 DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000165)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38180
fragaria_vesca FvH4_1g09751 FvH4_1g09751 FvH4_1g09751 FvH4_1g12531 FvH4_1g19193 FvH4_2g07051 FvH4_2g17131 FvH4_2g17131 FvH4_2g28082 FvH4_5g08845 FvH4_5g26361 FvH4_5g26361 FvH4_5g26361 FvH4_5g26361 FvH4_5g39269 FvH4_6g36651 FvH4_6g38410 FvH4_7g04941 FvH4_7g04941
malus_domestica MD00G1156400.v1.1 MD02G1139600.v1.1 MD05G1144600.v1.1 MD06G1002400.v1.1 MD10G1143900.v1.1 MD15G1227300.v1.1 MD15G1252700.v1.1
prunus_persica Prupe.2G147900_v2.0.a1 Prupe.3G257900_v2.0.a1 Prupe.5G003600_v2.0.a1 Prupe.5G053800_v2.0.a1 Prupe.6G011300_v2.0.a1 Prupe.7G161400_v2.0.a1 Prupe.7G161500_v2.0.a1 Prupe.7G188000_v2.0.a1 Prupe.8G182700_v2.0.a1 Prupe.8G182700_v2.0.a1 Prupe.8G182700_v2.0.a1
pyrus_communis pycom02g11030 pycom05g13970 pycom06g00250 pycom10g12390 pycom10g12400 pycom15g20220 pycom15g22260 pycom17g05620
rosa_chinensis RchiOBHm_Chr2g0096701 RchiOBHm_Chr2g0100471 RchiOBHm_Chr2g0100481 RchiOBHm_Chr6g0281561 RchiOBHm_Chr7g0187081 RchiOBHm_Chr7g0217201 RchiOBHm_Chr7g0228321
rosa_laevigata RLG00000001574 RLG00000002527 RLG00000008169 RLG00000011104 RLG00000012963 RLG00000013720 RLG00000014615 RLG00000016663 RLG00000018214 RLG00000018621 RLG00000018622 RLG00000022494
rosa_multiflora Rmu_co8187762.1_g000001 Rmu_co8276569.1_g000001 Rmu_sc0000528.1_g000025 Rmu_sc0001095.1_g000001 Rmu_sc0001095.1_g000002 Rmu_sc0001167.1_g000007 Rmu_sc0001758.1_g000042 Rmu_sc0002147.1_g000004 Rmu_sc0002489.1_g000048 Rmu_sc0002564.1_g000015 Rmu_sc0002902.1_g000037 Rmu_sc0003565.1_g000022 Rmu_sc0003576.1_g000008 Rmu_sc0003720.1_g000022 Rmu_sc0003720.1_g000023 Rmu_sc0003862.1_g000023 Rmu_sc0006475.1_g000009 Rmu_sc0006475.1_g000010 Rmu_sc0006735.1_g000001 Rmu_sc0007586.1_g000004 Rmu_sc0009650.1_g000010 Rmu_sc0010963.1_g000005 Rmu_sc0012557.1_g000002 Rmu_sc0020744.1_g000001 Rmu_sc0020745.1_g000002 Rmu_sc0022201.1_g000001 Rmu_sc0022408.1_g000011 Rmu_sc0023414.1_g000001 Rmu_sc0025101.1_g000001 Rmu_ssc0000211.1_g000015 Rmu_ssc0000240.1_g000012
rosa_roxburghii Rroxscaffold_1G00013940 Rroxscaffold_1G00018420 Rroxscaffold_2G00142210 Rroxscaffold_2G00142230 Rroxscaffold_2G00145400 Rroxscaffold_3G00240120 Rroxscaffold_3G00240150 Rroxscaffold_3G00242500 Rroxscaffold_5G00346610 Rroxscaffold_5G00356000 Rroxscaffold_7G00187000 Rroxscaffold_7G00212120
rosa_rugosa Rorug01G0260900 Rorug01G0446900 Rorug02G0059800 Rorug02G0059900 Rorug02G0088400 Rorug02G0088500 Rorug02G0522300 Rorug03G0234100 Rorug03G0234100 Rorug03G0242400 Rorug04G0109900 Rorug04G0326100 Rorug05G0275900 Rorug06G0141600 Rorug06G0141700 Rorug06G0141700 Rorug07G0167200 Rorug07G0247000 Rorug07G0247000 Rorug07G0247100.1
rosa_samantha Rh1AG046800 Rh1AG111600 Rh1AG242600 Rh1CG226400 Rh1DG086400 Rh2AG107200 Rh2AG138100 Rh2AG528600 Rh2BG109600 Rh2BG141200 Rh2BG273400 Rh2BG357800 Rh2BG640200 Rh2CG111400 Rh2CG143400 Rh2CG161100 Rh2CG251300 Rh2DG111000 Rh2DG142900 Rh2DG651100 Rh3BG318000 Rh4AG167800 Rh4AG253700 Rh5AG282900 Rh6AG254100 Rh6BG257100 Rh6CG256400 Rh6DG248200 Rh7AG306100 Rh7BG297500 Rh7CG325200 Rh7CG420200 Rh7DG306000
rosa_wichuraiana Rw2G008310 Rw2G010790 Rw2G010800 Rw2G013840 Rw2G022430 Rw3G020550 Rw3G024980 Rw3G025930 Rw5G026810 Rw5G035870 Rw6G022060 Rw6G030700 Rw7G007420 Rw7G026010 Rw7G033340 Rw7G037700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 113
AcsI RAATTY 3 cut(s) 182, 301, 528
AcuI CTGAAG 1 cut(s) 459
AfaI GTAC 1 cut(s) 109
AgeI ACCGGT 1 cut(s) 512
AgsI TTSAA 1 cut(s) 503
AjuI GAANNNNNNNTTGG 4 cut(s) 135, 167, 291, 323
AluBI AGCT 2 cut(s) 104, 287
AluI AGCT 2 cut(s) 104, 287
ApeKI GCWGC 2 cut(s) 125, 164
ApoI RAATTY 3 cut(s) 182, 301, 528
ArsI GACNNNNNNTTYG 2 cut(s) 235, 267
AsiGI ACCGGT 1 cut(s) 512
Asp700I GAANNNNTTC 1 cut(s) 185
AsuC2I CCSGG 1 cut(s) 521
AsuHPI GGTGA 1 cut(s) 331
BbvI GCAGC 2 cut(s) 112, 151
BceAI ACGGC 1 cut(s) 152
BcnI CCSGG 1 cut(s) 521
BfaI CTAG 3 cut(s) 288, 461, 507
BisI GCNGC 3 cut(s) 114, 126, 165
BlpI GCTNAGC 1 cut(s) 44
BlsI GCNGC 3 cut(s) 115, 127, 166
Bme1390I CCNGG 1 cut(s) 521
BmrFI CCNGG 1 cut(s) 521
Bpu1102I GCTNAGC 1 cut(s) 44
BpuMI CCSGG 1 cut(s) 521
BsaWI WCCGGW 1 cut(s) 512
BsaXI ACNNNNNCTCC 2 cut(s) 303, 333
Bse118I RCCGGY 1 cut(s) 512
BseGI GGATG 1 cut(s) 262
BseRI GAGGAG 1 cut(s) 412
BseXI GCAGC 2 cut(s) 112, 151
BshTI ACCGGT 1 cut(s) 512
BsiSI CCGG 3 cut(s) 198, 513, 521
Bsp1720I GCTNAGC 1 cut(s) 44
BspACI CCGC 1 cut(s) 113
BspHI TCATGA 1 cut(s) 240
BsrFI RCCGGY 1 cut(s) 512
BssAI RCCGGY 1 cut(s) 512
Bst4CI ACNGT 3 cut(s) 319, 353, 467
BstDEI CTNAG 3 cut(s) 8, 44, 65
BstF5I GGATG 1 cut(s) 262
BstMWI GCNNNNNNNGC 2 cut(s) 110, 122
BstSCI CCNGG 1 cut(s) 519
BstV1I GCAGC 2 cut(s) 112, 151
BtsCI GGATG 1 cut(s) 262
BtsIMutI CAGTG 2 cut(s) 206, 472
CciI TCATGA 1 cut(s) 240
Cfr10I RCCGGY 1 cut(s) 512
Csp6I GTAC 1 cut(s) 108
CspAI ACCGGT 1 cut(s) 512
CviAII CATG 2 cut(s) 23, 241
CviJI RGCY 5 cut(s) 43, 62, 104, 287, 499
CviKI_1 RGCY 5 cut(s) 43, 62, 104, 287, 499
CviQI GTAC 1 cut(s) 108
DdeI CTNAG 3 cut(s) 8, 44, 65
DraI TTTAAA 1 cut(s) 457
Eco32I GATATC 1 cut(s) 238
Eco57I CTGAAG 1 cut(s) 459
EcoRV GATATC 1 cut(s) 238
FaeI CATG 2 cut(s) 26, 244
FaiI YATR 7 cut(s) 24, 29, 218, 242, 340, 360, 559
FatI CATG 2 cut(s) 22, 240
Fnu4HI GCNGC 3 cut(s) 114, 126, 165
FokI GGATG 1 cut(s) 249
Fsp4HI GCNGC 3 cut(s) 114, 126, 165
FspBI CTAG 3 cut(s) 288, 461, 507
GluI GCNGC 3 cut(s) 114, 126, 165
HapII CCGG 3 cut(s) 198, 513, 521
Hin1II CATG 2 cut(s) 26, 244
HinfI GANTC 5 cut(s) 4, 277, 490, 534, 568
HpaII CCGG 3 cut(s) 198, 513, 521
HphI GGTGA 1 cut(s) 331
Hpy166II GTNNAC 2 cut(s) 16, 484
Hpy188I TCNGA 7 cut(s) 9, 180, 250, 267, 368, 478, 539
Hpy188III TCNNGA 2 cut(s) 241, 581
Hpy8I GTNNAC 2 cut(s) 16, 484
HpyAV CCTTC 2 cut(s) 443, 483
HpyCH4III ACNGT 3 cut(s) 319, 353, 467
HpyCH4V TGCA 2 cut(s) 544, 602
HpyF10VI GCNNNNNNNGC 2 cut(s) 110, 122
HpyF3I CTNAG 3 cut(s) 8, 44, 65
Hsp92II CATG 2 cut(s) 26, 244
LpnPI CCDG 8 cut(s) 90, 207, 211, 406, 481, 526, 534, 594
Lsp1109I GCAGC 2 cut(s) 112, 151
MaeI CTAG 3 cut(s) 288, 461, 507
MaeIII GTNAC 4 cut(s) 130, 313, 467, 565
MboII GAAGA 3 cut(s) 106, 245, 344
MluCI AATT 5 cut(s) 182, 301, 430, 528, 553
MlyI GAGTC 3 cut(s) 13, 484, 562
MnlI CCTC 8 cut(s) 64, 83, 214, 223, 322, 356, 390, 393
MroXI GAANNNNTTC 1 cut(s) 185
MseI TTAA 1 cut(s) 456
MslI CAYNNNNRTG 1 cut(s) 21
MspA1I CMGCKG 1 cut(s) 113
MspI CCGG 3 cut(s) 198, 513, 521
MspR9I CCNGG 1 cut(s) 521
MwoI GCNNNNNNNGC 2 cut(s) 110, 122
NciI CCSGG 1 cut(s) 521
NlaIII CATG 2 cut(s) 26, 244
NmuCI GTSAC 3 cut(s) 130, 467, 565
PagI TCATGA 1 cut(s) 240
PdmI GAANNNNTTC 1 cut(s) 185
PfeI GAWTC 2 cut(s) 277, 534
PinAI ACCGGT 1 cut(s) 512
PkrI GCNGC 3 cut(s) 115, 127, 166
PleI GAGTC 3 cut(s) 12, 484, 562
PpsI GAGTC 3 cut(s) 12, 484, 562
RsaI GTAC 1 cut(s) 109
RsaNI GTAC 1 cut(s) 108
RseI CAYNNNNRTG 1 cut(s) 21
SaqAI TTAA 1 cut(s) 456
SatI GCNGC 3 cut(s) 114, 126, 165
SchI GAGTC 3 cut(s) 13, 484, 562
ScrFI CCNGG 1 cut(s) 521
SetI ASST 4 cut(s) 106, 289, 348, 454
SmiMI CAYNNNNRTG 1 cut(s) 21
Sse9I AATT 5 cut(s) 182, 301, 430, 528, 553
SsiI CCGC 1 cut(s) 113
SspMI CTAG 3 cut(s) 288, 461, 507
StyD4I CCNGG 1 cut(s) 519
TaaI ACNGT 3 cut(s) 319, 353, 467
TaqI TCGA 1 cut(s) 532
TasI AATT 5 cut(s) 182, 301, 430, 528, 553
TauI GCSGC 1 cut(s) 116
TfiI GAWTC 2 cut(s) 277, 534
Tru1I TTAA 1 cut(s) 456
Tru9I TTAA 1 cut(s) 456
TscAI CASTG 2 cut(s) 213, 472
TseFI GTSAC 3 cut(s) 130, 467, 565
TseI GCWGC 2 cut(s) 125, 164
Tsp45I GTSAC 3 cut(s) 130, 467, 565
TspDTI ATGAA 1 cut(s) 312
TspRI CASTG 2 cut(s) 213, 472
XapI RAATTY 3 cut(s) 182, 301, 528
XmnI GAANNNNTTC 1 cut(s) 185
XspI CTAG 3 cut(s) 288, 461, 507
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.