Rh1AG046800

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000165
Physical Location & Seq
Forward (+)
7962858 .. 7969003
6146 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG046800.1

Sequence Viewer

Length: 2319 bp
ATGGAGGAAACTATTGGAGACGAAGAAGAACTCAAAGTGGGAATGCAAGTACACTCTGATGATGAGGCTTACAATTTATATAACACCTATGCTTTGAGGAAGGGTTTCAGTGTTCGTAAAGGACATATTCGAAGAGATGCATCAAATAAAATCCGCCAACGAGAATTTCTGTGTTCAAAGGAGGGGTTTACAAGAGACGAGGATGTATGTCAACCAAACAAACACAGGAAGTTAGAAACAAGAGTTGGTTGTAAGGCTATGATATCATTTACAGTGAAAGATGGAATATGGACAGTATCGCAGATCAATTCAGATCATAACCATGAGCTTGCAAAGCCCGAAGAAAGGCAATTTTTGAGATCAGGGCGAAAAGTAACAGGTGCTTGTGGAAATATTTTTGCTTCTATGTATGATGCAGGCATAGGACCAAAGAAATCATTTTTCTACATAGCAAATGAAGTGGGTGGTCCGGAAAATGTTGGGTGCACTAAGAAGGATGTCTATAACTACTTGCAAAGGAAAAAGAATGAAATGTTGGAAGCAGGTGATGCACAAAGTTTGCTGAATCACTTTAAGAGCAAACAAGGTGAGGATCCTAACTTTTTCTACTCAATGCAATTGGACCAATATAGCCGAATGACGAATTTCTTTTGGAGGGATAGCAGAGCAAAGCTTGATTATGATTGTTTTGGGGATGTTATATGCTTTGACACAACATTTCGTACGAACAAGTATAATTTGATTTGTGCACCTATAGTTGGAGTTAATCATCATTGGAGAAATGTTTTGTTTGGATGTGCTTTTTTATTAGATGAGACTACGGAGTCATTTGTTTGGTTGTTTGAGTCATTTTTGGAGTCCATGGGAAACAAAACACCAAAAACTATTTTCACAGATGAAGATAAAGCAATGGCAAATGCAATTGAAATAGTGTTTCCAAATGCATGTCATCGATTGTGCACTTGGCATATTGCCAAGAATGCCAGCAAGAGAATTGGTAGTTATCTTGGAAATCTTGAGTTCAAGAAACAGTTCAACCATTTTTTACATGGATGTAGTACTGAAGTTGAATTTCGAGTTTCATGGGATAGCATGATTACTAGATATAATCTTAGAGATCATACTTGGCTTACAAAGTTGTATTCACTTCGACAAAAGTGGTGTCCAGCATTTAATTTGGATATTTTTTCAGCAAAGATTAGATCAACTCAAAGGAGTGAAAGTACAAACAATGTGTTCCATGGAATCTCTACACACACAATGGAGCTCATTAAATTTGTTCATCACTATGAGAAAAAGATTGAGGAGAATCGTTTAGCAGAGTTGGAGGATGACTACCGTTGCAAAAATGGTGCACCACGTCCAAAAGTATGGAGTAAAATGTTAAGGAGTGCAGCCAAGGTTTATACTAATAAAATGTTTCAGCTTTTTGAAACAGAATTCTATGGTTGTATGGGAGTTAGACTAAAAGAAGTTTCCAGCTGGGATGGAGTTTATATATATCAAGCCATTGAAGATGGTCATCAAAGTGTGCACAAGATTGAATATAATTCTACATCCTTGAACATTAATTGTTCTTGTAAGTCATTTGAGTCGCTTGGAATCTTGTGTCGTCATGCTTTGAAGGTGTTTGATATGAATAATATCACTACTTTACCCACTCAGTATATCTTGAAGAGGTGGACTAAAGAAGCAAAGAAAGGGATTGTGGTTAGCAATAATACATGTAAAGGAACAAGTGAGAATTCAAAGTCTGCTAGAGTGTTGCGCCTTAGCGAATTGATGCATGAAGGAAATAGTCTGTATGACATAGCCTCACTGACCGATTCAGGTACTGAAATTGTCAAGGATCTGTTAAAAGAGGCAATGAAGCGCCTTGAAAAAGATAAGGACACTATCTACGTGTTGGAAAATTTGAAGAAACTTGGTGACCAATCTGACTCTGGAATTCCTTGTAATGAGATACTAGTTTTGAATCCACCAAGTGCAAAGACTAAAGGAATGAAAAATGCTAGAATCAAAGACGTGAGGGAGATAAACCAACGGAAGAAGAGAACAAAAGAACAAGAAAGTCAAGAAAACAATGATCCAAATGCTCCAAATCATGTGTCTACATCTAACCATCAGTTTGGTGTACTTAACACCTCATTTTATAATCAGGGAATTTTAAGTTGGCCTTTTGGACATCCCAATCCATGTTTTAGTTATGGTCAGATACCTTTCTCAAACCAGAATTCAACTTACTCAACTACAAGTCTGAATCTTGCACCAGCTACAACTCTAACTACAAATACTACACTCAGACAACAACCTCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE PEARLI-4 SWIM

Protein Analysis

772

Amino Acids

88.81

Weight (kDa)

8.74

Isoelectric Point (pI)

41.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 26 - 111 1.6e-21 FAR1 DNA-binding domain
ZSWIM1-3_RNaseH-like PF21056 198 - 315 2.5e-07 Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain
MULE PF10551 233 - 327 1.8e-30 MULE transposase domain
SWIM PF04434 522 - 545 1.3e-06 SWIM zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000165)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38180
fragaria_vesca FvH4_1g09751 FvH4_1g09751 FvH4_1g09751 FvH4_1g12531 FvH4_1g19193 FvH4_2g07051 FvH4_2g17131 FvH4_2g17131 FvH4_2g28082 FvH4_5g08845 FvH4_5g26361 FvH4_5g26361 FvH4_5g26361 FvH4_5g26361 FvH4_5g39269 FvH4_6g36651 FvH4_6g38410 FvH4_7g04941 FvH4_7g04941
malus_domestica MD00G1156400.v1.1 MD02G1139600.v1.1 MD05G1144600.v1.1 MD06G1002400.v1.1 MD10G1143900.v1.1 MD15G1227300.v1.1 MD15G1252700.v1.1
prunus_persica Prupe.2G147900_v2.0.a1 Prupe.3G257900_v2.0.a1 Prupe.5G003600_v2.0.a1 Prupe.5G053800_v2.0.a1 Prupe.6G011300_v2.0.a1 Prupe.7G161400_v2.0.a1 Prupe.7G161500_v2.0.a1 Prupe.7G188000_v2.0.a1 Prupe.8G182700_v2.0.a1 Prupe.8G182700_v2.0.a1 Prupe.8G182700_v2.0.a1
pyrus_communis pycom02g11030 pycom05g13970 pycom06g00250 pycom10g12390 pycom10g12400 pycom15g20220 pycom15g22260 pycom17g05620
rosa_chinensis RchiOBHm_Chr2g0096701 RchiOBHm_Chr2g0100471 RchiOBHm_Chr2g0100481 RchiOBHm_Chr6g0281561 RchiOBHm_Chr7g0187081 RchiOBHm_Chr7g0217201 RchiOBHm_Chr7g0228321
rosa_laevigata RLG00000001574 RLG00000002527 RLG00000008169 RLG00000011104 RLG00000012963 RLG00000013720 RLG00000014615 RLG00000016663 RLG00000018214 RLG00000018621 RLG00000018622 RLG00000022494
rosa_multiflora Rmu_co8187762.1_g000001 Rmu_co8276569.1_g000001 Rmu_sc0000528.1_g000025 Rmu_sc0001095.1_g000001 Rmu_sc0001095.1_g000002 Rmu_sc0001167.1_g000007 Rmu_sc0001758.1_g000042 Rmu_sc0002147.1_g000004 Rmu_sc0002489.1_g000048 Rmu_sc0002564.1_g000015 Rmu_sc0002902.1_g000037 Rmu_sc0003565.1_g000022 Rmu_sc0003576.1_g000008 Rmu_sc0003720.1_g000022 Rmu_sc0003720.1_g000023 Rmu_sc0003862.1_g000023 Rmu_sc0006475.1_g000009 Rmu_sc0006475.1_g000010 Rmu_sc0006735.1_g000001 Rmu_sc0007586.1_g000004 Rmu_sc0009650.1_g000010 Rmu_sc0010963.1_g000005 Rmu_sc0012557.1_g000002 Rmu_sc0020744.1_g000001 Rmu_sc0020745.1_g000002 Rmu_sc0022201.1_g000001 Rmu_sc0022408.1_g000011 Rmu_sc0023414.1_g000001 Rmu_sc0025101.1_g000001 Rmu_ssc0000211.1_g000015 Rmu_ssc0000240.1_g000012
rosa_roxburghii Rroxscaffold_1G00013940 Rroxscaffold_1G00018420 Rroxscaffold_2G00142210 Rroxscaffold_2G00142230 Rroxscaffold_2G00145400 Rroxscaffold_3G00240120 Rroxscaffold_3G00240150 Rroxscaffold_3G00242500 Rroxscaffold_5G00346610 Rroxscaffold_5G00356000 Rroxscaffold_7G00187000 Rroxscaffold_7G00212120
rosa_rugosa Rorug01G0260900 Rorug01G0446900 Rorug02G0059800 Rorug02G0059900 Rorug02G0088400 Rorug02G0088500 Rorug02G0522300 Rorug03G0234100 Rorug03G0234100 Rorug03G0242400 Rorug04G0109900 Rorug04G0326100 Rorug05G0275900 Rorug06G0141600 Rorug06G0141700 Rorug06G0141700 Rorug07G0167200 Rorug07G0247000 Rorug07G0247000 Rorug07G0247100.1
rosa_samantha Rh1AG046800 Rh1AG111600 Rh1AG242600 Rh1CG226400 Rh1DG086400 Rh2AG107200 Rh2AG138100 Rh2AG528600 Rh2BG109600 Rh2BG141200 Rh2BG273400 Rh2BG357800 Rh2BG640200 Rh2CG111400 Rh2CG143400 Rh2CG161100 Rh2CG251300 Rh2DG111000 Rh2DG142900 Rh2DG651100 Rh3BG318000 Rh4AG167800 Rh4AG253700 Rh5AG282900 Rh6AG254100 Rh6BG257100 Rh6CG256400 Rh6DG248200 Rh7AG306100 Rh7BG297500 Rh7CG325200 Rh7CG420200 Rh7DG306000
rosa_wichuraiana Rw2G008310 Rw2G010790 Rw2G010800 Rw2G013840 Rw2G022430 Rw3G020550 Rw3G024980 Rw3G025930 Rw5G026810 Rw5G035870 Rw6G022060 Rw6G030700 Rw7G007420 Rw7G026010 Rw7G033340 Rw7G037700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2154
AarI CACCTGC 1 cut(s) 533
AasI GACNNNNNNGTC 1 cut(s) 823
Acc36I ACCTGC 1 cut(s) 533
AccI GTMKAC 1 cut(s) 2111
AccIII TCCGGA 1 cut(s) 469
AciI CCGC 1 cut(s) 154
AclWI GGATC 4 cut(s) 587, 600, 1857, 2081
AcuI CTGAAG 1 cut(s) 1083
AdeI CACNNNGTG 1 cut(s) 1985
AfaI GTAC 6 cut(s) 51, 724, 1060, 1225, 1834, 2136
AfiI CCNNNNNNNGG 2 cut(s) 345, 758
AflIII ACRYGT 2 cut(s) 1724, 1902
AhlI ACTAGT 1 cut(s) 1966
AjiI CACGTC 2 cut(s) 1361, 2026
AjuI GAANNNNNNNTTGG 8 cut(s) 150, 182, 228, 260, 518, 550, 2155, 2187
AluBI AGCT 6 cut(s) 328, 673, 1267, 1426, 1482, 2273
AluI AGCT 6 cut(s) 328, 673, 1267, 1426, 1482, 2273
Alw21I GWGCWC 6 cut(s) 488, 751, 962, 1269, 1357, 1536
Alw26I GTCTC 3 cut(s) 12, 189, 809
Alw44I GTGCAC 5 cut(s) 484, 747, 958, 1353, 1532
AlwI GGATC 4 cut(s) 587, 600, 1857, 2081
AlwNI CAGNNNCTG 1 cut(s) 1835
Aor13HI TCCGGA 1 cut(s) 469
AoxI GGCC 1 cut(s) 2174
ApaLI GTGCAC 5 cut(s) 484, 747, 958, 1353, 1532
ApeKI GCWGC 1 cut(s) 1394
ArsI GACNNNNNNTTYG 4 cut(s) 1147, 1179, 2093, 2125
AseI ATTAAT 1 cut(s) 1569
Asp700I GAANNNNTTC 2 cut(s) 104, 1031
AspLEI GCGC 2 cut(s) 1770, 1875
AspS9I GGNCC 3 cut(s) 425, 467, 622
AsuHPI GGTGA 3 cut(s) 557, 599, 1940
AsuII TTCGAA 1 cut(s) 130
AvaII GGWCC 3 cut(s) 425, 467, 622
BaeGI GKGCMC 5 cut(s) 488, 751, 962, 1357, 1536
BamHI GGATCC 1 cut(s) 592
BanII GRGCYC 1 cut(s) 1269
Bbv12I GWGCWC 6 cut(s) 488, 751, 962, 1269, 1357, 1536
BbvI GCAGC 1 cut(s) 1406
BccI CCATC 4 cut(s) 275, 1481, 1511, 2130
BcoDI GTCTC 3 cut(s) 12, 189, 809
BcuI ACTAGT 1 cut(s) 1966
BfaI CTAG 4 cut(s) 1101, 1758, 1967, 2013
BfmI CTRYAG 1 cut(s) 753
BfoI RGCGCY 1 cut(s) 1876
BfuAI ACCTGC 1 cut(s) 533
BisI GCNGC 1 cut(s) 1395
BlsI GCNGC 1 cut(s) 1396
BmcAI AGTACT 1 cut(s) 1060
Bme18I GGWCC 3 cut(s) 425, 467, 622
BmgBI CACGTC 2 cut(s) 1361, 2026
BmgT120I GGNCC 3 cut(s) 425, 467, 622
BmiI GGNNCC 1 cut(s) 594
BmsI GCATC 5 cut(s) 127, 149, 403, 538, 1773
Bpu10I CCTNAGC 1 cut(s) 1772
Bpu14I TTCGAA 1 cut(s) 130
BpuEI CTTGAG 1 cut(s) 1037
Bsa29I ATCGAT 1 cut(s) 952
BsaAI YACGTR 1 cut(s) 1903
BsaBI GATNNNNATC 1 cut(s) 1521
BsaJI CCNNGG 3 cut(s) 861, 1240, 1398
BsaWI WCCGGW 1 cut(s) 469
BsaXI ACNNNNNCTCC 2 cut(s) 1207, 1237
Bsc4I CCNNNNNNNGG 2 cut(s) 345, 758
Bse3DI GCAATG 2 cut(s) 915, 1872
Bse8I GATNNNNATC 1 cut(s) 1521
BseAI TCCGGA 1 cut(s) 469
BseCI ATCGAT 1 cut(s) 952
BseDI CCNNGG 3 cut(s) 861, 1240, 1398
BseGI GGATG 9 cut(s) 208, 502, 700, 800, 1058, 1336, 1492, 1556, 2185
BseJI GATNNNNATC 1 cut(s) 1521
BseLI CCNNNNNNNGG 2 cut(s) 345, 758
BseMI GCAATG 2 cut(s) 915, 1872
BseMII CTCAG 2 cut(s) 1676, 2314
BseRI GAGGAG 1 cut(s) 1319
BseSI GKGCMC 5 cut(s) 488, 751, 962, 1357, 1536
BseXI GCAGC 1 cut(s) 1406
BseYI CCCAGC 1 cut(s) 1482
BsgI GTGCAG 1 cut(s) 1413
BshFI GGCC 1 cut(s) 2176
BshVI ATCGAT 1 cut(s) 952
BsiHKAI GWGCWC 6 cut(s) 488, 751, 962, 1269, 1357, 1536
BsiSI CCGG 1 cut(s) 470
BsiWI CGTACG 1 cut(s) 722
BslI CCNNNNNNNGG 2 cut(s) 345, 758
BsmAI GTCTC 3 cut(s) 12, 189, 809
BsmBI CGTCTC 2 cut(s) 12, 189
BsmI GAATGC 2 cut(s) 48, 985
BsnI GGCC 1 cut(s) 2176
Bsp119I TTCGAA 1 cut(s) 130
Bsp1286I GDGCHC 6 cut(s) 488, 751, 962, 1269, 1357, 1536
Bsp13I TCCGGA 1 cut(s) 469
Bsp143I GATC 8 cut(s) 303, 313, 359, 592, 1117, 1202, 1849, 2086
Bsp19I CCATGG 2 cut(s) 861, 1240
BspACI CCGC 1 cut(s) 154
BspANI GGCC 1 cut(s) 2176
BspCNI CTCAG 2 cut(s) 1675, 2313
BspDI ATCGAT 1 cut(s) 952
BspEI TCCGGA 1 cut(s) 469
BspLI GGNNCC 1 cut(s) 594
BspMI ACCTGC 1 cut(s) 533
BspPI GGATC 4 cut(s) 587, 600, 1857, 2081
BspT104I TTCGAA 1 cut(s) 130
BsrDI GCAATG 2 cut(s) 915, 1872
BssECI CCNNGG 3 cut(s) 861, 1240, 1398
BssMI GATC 8 cut(s) 303, 313, 359, 592, 1117, 1202, 1849, 2086
BssT1I CCWWGG 3 cut(s) 861, 1240, 1398
Bst4CI ACNGT 4 cut(s) 274, 295, 1032, 1340
Bst6I CTCTTC 3 cut(s) 127, 1670, 2045
BstAPI GCANNNNNTGC 1 cut(s) 548
BstBAI YACGTR 1 cut(s) 1903
BstBI TTCGAA 1 cut(s) 130
BstC8I GCNNGC 3 cut(s) 330, 418, 985
BstDEI CTNAG 6 cut(s) 489, 1112, 1662, 1772, 2300, 2313
BstDSI CCRYGG 2 cut(s) 861, 1240
BstEII GGTNACC 1 cut(s) 1928
BstF5I GGATG 9 cut(s) 208, 502, 700, 800, 1058, 1336, 1492, 1556, 2185
BstH2I RGCGCY 1 cut(s) 1876
BstHHI GCGC 2 cut(s) 1770, 1875
BstKTI GATC 8 cut(s) 306, 316, 362, 595, 1120, 1205, 1852, 2089
BstMAI GTCTC 3 cut(s) 12, 189, 809
BstMBI GATC 8 cut(s) 303, 313, 359, 592, 1117, 1202, 1849, 2086
BstMWI GCNNNNNNNGC 3 cut(s) 334, 548, 980
BstNSI RCATGY 2 cut(s) 948, 1728
BstPI GGTNACC 1 cut(s) 1928
BstSFI CTRYAG 1 cut(s) 753
BstSLI GKGCMC 5 cut(s) 488, 751, 962, 1357, 1536
BstV1I GCAGC 1 cut(s) 1406
BstX2I RGATCY 2 cut(s) 592, 1849
BstXI CCANNNNNNTGG 2 cut(s) 1371, 2129
BstYI RGATCY 2 cut(s) 592, 1849
Bsu15I ATCGAT 1 cut(s) 952
BsuRI GGCC 1 cut(s) 2176
BsuTUI ATCGAT 1 cut(s) 952
BtgI CCRYGG 2 cut(s) 861, 1240
BtrI CACGTC 2 cut(s) 1361, 2026
BtsCI GGATG 9 cut(s) 208, 502, 700, 800, 1058, 1336, 1492, 1556, 2185
BtsIMutI CAGTG 3 cut(s) 115, 279, 1817
BveI ACCTGC 1 cut(s) 533
Cac8I GCNNGC 3 cut(s) 330, 418, 985
CaiI CAGNNNCTG 1 cut(s) 1835
CfoI GCGC 2 cut(s) 1770, 1875
Cfr13I GGNCC 3 cut(s) 425, 467, 622
ClaI ATCGAT 1 cut(s) 952
Csp6I GTAC 6 cut(s) 50, 723, 1059, 1224, 1833, 2135
CspCI CAANNNNNGTGG 2 cut(s) 441, 476
CviQI GTAC 6 cut(s) 50, 723, 1059, 1224, 1833, 2135
DdeI CTNAG 6 cut(s) 489, 1112, 1662, 1772, 2300, 2313
DpnI GATC 8 cut(s) 305, 315, 361, 594, 1119, 1204, 1851, 2088
DpnII GATC 8 cut(s) 303, 313, 359, 592, 1117, 1202, 1849, 2086
DraIII CACNNNGTG 1 cut(s) 1985
DrdI GACNNNNNNGTC 1 cut(s) 823
DseDI GACNNNNNNGTC 1 cut(s) 823
Eam1104I CTCTTC 3 cut(s) 127, 1670, 2045
EarI CTCTTC 3 cut(s) 127, 1670, 2045
EciI GGCGGA 1 cut(s) 143
Ecl136II GAGCTC 1 cut(s) 1267
Eco130I CCWWGG 3 cut(s) 861, 1240, 1398
Eco24I GRGCYC 1 cut(s) 1269
Eco32I GATATC 1 cut(s) 264
Eco47I GGWCC 3 cut(s) 425, 467, 622
Eco53kI GAGCTC 1 cut(s) 1267
Eco57I CTGAAG 1 cut(s) 1083
Eco91I GGTNACC 1 cut(s) 1928
EcoICRI GAGCTC 1 cut(s) 1267
EcoO65I GGTNACC 1 cut(s) 1928
EcoRI GAATTC 4 cut(s) 1439, 1744, 1947, 2233
EcoRV GATATC 1 cut(s) 264
EcoT14I CCWWGG 3 cut(s) 861, 1240, 1398
EcoT22I ATGCAT 3 cut(s) 142, 946, 1788
EcoT38I GRGCYC 1 cut(s) 1269
ErhI CCWWGG 3 cut(s) 861, 1240, 1398
Esp3I CGTCTC 2 cut(s) 12, 189
FalI AAGNNNNNCTT 2 cut(s) 2161, 2193
FblI GTMKAC 1 cut(s) 2111
Fnu4HI GCNGC 1 cut(s) 1395
FokI GGATG 9 cut(s) 215, 509, 707, 807, 1065, 1343, 1499, 1543, 2172
FriOI GRGCYC 1 cut(s) 1269
Fsp4HI GCNGC 1 cut(s) 1395
FspBI CTAG 4 cut(s) 1101, 1758, 1967, 2013
GlaI GCGC 2 cut(s) 1769, 1874
GluI GCNGC 1 cut(s) 1395
GsaI CCCAGC 1 cut(s) 1486
HaeII RGCGCY 1 cut(s) 1876
HaeIII GGCC 1 cut(s) 2176
HapII CCGG 1 cut(s) 470
HhaI GCGC 2 cut(s) 1770, 1875
Hin6I GCGC 2 cut(s) 1768, 1873
HinP1I GCGC 2 cut(s) 1768, 1873
HincII GTYRAC 1 cut(s) 212
HindII GTYRAC 1 cut(s) 212
HindIII AAGCTT 1 cut(s) 671
HpaII CCGG 1 cut(s) 470
HphI GGTGA 3 cut(s) 557, 599, 1940
Hpy188I TCNGA 6 cut(s) 58, 313, 1939, 2214, 2259, 2303
Hpy188III TCNNGA 6 cut(s) 470, 1016, 1024, 1672, 1944, 2075
HpyAV CCTTC 4 cut(s) 94, 487, 1618, 1784
HpyCH4III ACNGT 4 cut(s) 274, 295, 1032, 1340
HpyCH4IV ACGT 3 cut(s) 1360, 1902, 2025
HpyF10VI GCNNNNNNNGC 3 cut(s) 334, 548, 980
HpyF3I CTNAG 6 cut(s) 489, 1112, 1662, 1772, 2300, 2313
HpySE526I ACGT 3 cut(s) 1360, 1902, 2025
HspAI GCGC 2 cut(s) 1768, 1873
Kpn2I TCCGGA 1 cut(s) 469
Kzo9I GATC 8 cut(s) 303, 313, 359, 592, 1117, 1202, 1849, 2086
LmnI GCTCC 2 cut(s) 1264, 2101
Lsp1109I GCAGC 1 cut(s) 1406
LweI GCATC 5 cut(s) 127, 149, 403, 538, 1773
MaeI CTAG 4 cut(s) 1101, 1758, 1967, 2013
MaeII ACGT 3 cut(s) 1360, 1902, 2025
MaeIII GTNAC 2 cut(s) 373, 1928
MalI GATC 8 cut(s) 305, 315, 361, 594, 1119, 1204, 1851, 2088
MboI GATC 8 cut(s) 303, 313, 359, 592, 1117, 1202, 1849, 2086
MfeI CAATTG 2 cut(s) 617, 921
MflI RGATCY 2 cut(s) 592, 1849
MhlI GDGCHC 6 cut(s) 488, 751, 962, 1269, 1357, 1536
MlyI GAGTC 5 cut(s) 833, 854, 866, 1601, 1934
MmeI TCCRAC 4 cut(s) 516, 739, 1305, 1887
Mph1103I ATGCAT 3 cut(s) 142, 946, 1788
MroI TCCGGA 1 cut(s) 469
MroXI GAANNNNTTC 2 cut(s) 104, 1031
MseI TTAA 9 cut(s) 573, 765, 1173, 1272, 1385, 1569, 1856, 2139, 2168
MslI CAYNNNNRTG 4 cut(s) 57, 321, 1287, 1527
MspA1I CMGCKG 1 cut(s) 1482
MspI CCGG 1 cut(s) 470
MunI CAATTG 2 cut(s) 617, 921
Mva1269I GAATGC 2 cut(s) 48, 985
MwoI GCNNNNNNNGC 3 cut(s) 334, 548, 980
NcoI CCATGG 2 cut(s) 861, 1240
NdeII GATC 8 cut(s) 303, 313, 359, 592, 1117, 1202, 1849, 2086
NlaIV GGNNCC 1 cut(s) 594
NmuCI GTSAC 1 cut(s) 1928
NsiI ATGCAT 3 cut(s) 142, 946, 1788
NspI RCATGY 2 cut(s) 948, 1728
NspV TTCGAA 1 cut(s) 130
PaqCI CACCTGC 1 cut(s) 533
PciI ACATGT 1 cut(s) 1724
PctI GAATGC 2 cut(s) 48, 985
PdmI GAANNNNTTC 2 cut(s) 104, 1031
PfeI GAWTC 8 cut(s) 565, 1245, 1309, 1602, 1826, 1975, 2016, 2260
Pfl23II CGTACG 1 cut(s) 722
PkrI GCNGC 1 cut(s) 1396
PleI GAGTC 5 cut(s) 832, 853, 865, 1600, 1934
PpsI GAGTC 5 cut(s) 832, 853, 865, 1600, 1934
Ppu21I YACGTR 1 cut(s) 1903
PscI ACATGT 1 cut(s) 1724
PshBI ATTAAT 1 cut(s) 1569
PsiI TTATAA 1 cut(s) 2154
Psp124BI GAGCTC 1 cut(s) 1269
PspEI GGTNACC 1 cut(s) 1928
PspFI CCCAGC 1 cut(s) 1482
PspLI CGTACG 1 cut(s) 722
PspN4I GGNNCC 1 cut(s) 594
PspPI GGNCC 3 cut(s) 425, 467, 622
PstNI CAGNNNCTG 1 cut(s) 1835
PsuI RGATCY 2 cut(s) 592, 1849
PvuII CAGCTG 1 cut(s) 1482
RsaI GTAC 6 cut(s) 51, 724, 1060, 1225, 1834, 2136
RsaNI GTAC 6 cut(s) 50, 723, 1059, 1224, 1833, 2135
RseI CAYNNNNRTG 4 cut(s) 57, 321, 1287, 1527
SacI GAGCTC 1 cut(s) 1269
SaqAI TTAA 9 cut(s) 573, 765, 1173, 1272, 1385, 1569, 1856, 2139, 2168
SatI GCNGC 1 cut(s) 1395
Sau3AI GATC 8 cut(s) 303, 313, 359, 592, 1117, 1202, 1849, 2086
Sau96I GGNCC 3 cut(s) 425, 467, 622
ScaI AGTACT 1 cut(s) 1060
SchI GAGTC 5 cut(s) 833, 854, 866, 1601, 1934
SduI GDGCHC 6 cut(s) 488, 751, 962, 1269, 1357, 1536
SfaNI GCATC 5 cut(s) 127, 149, 403, 538, 1773
SfcI CTRYAG 1 cut(s) 753
SfuI TTCGAA 1 cut(s) 130
SinI GGWCC 3 cut(s) 425, 467, 622
SmiMI CAYNNNNRTG 4 cut(s) 57, 321, 1287, 1527
SmlI CTYRAG 1 cut(s) 1016
SmoI CTYRAG 1 cut(s) 1016
SpeI ACTAGT 1 cut(s) 1966
SsiI CCGC 1 cut(s) 154
SspI AATATT 1 cut(s) 394
SspMI CTAG 4 cut(s) 1101, 1758, 1967, 2013
SstI GAGCTC 1 cut(s) 1269
StyI CCWWGG 3 cut(s) 861, 1240, 1398
TaaI ACNGT 4 cut(s) 274, 295, 1032, 1340
TaiI ACGT 3 cut(s) 1363, 1905, 2028
TaqI TCGA 4 cut(s) 130, 952, 1075, 1150
TaqII GACCGA 1 cut(s) 1838
TatI WGTACW 4 cut(s) 49, 1058, 1223, 2134
TfiI GAWTC 8 cut(s) 565, 1245, 1309, 1602, 1826, 1975, 2016, 2260
Tru1I TTAA 9 cut(s) 573, 765, 1173, 1272, 1385, 1569, 1856, 2139, 2168
Tru9I TTAA 9 cut(s) 573, 765, 1173, 1272, 1385, 1569, 1856, 2139, 2168
TscAI CASTG 3 cut(s) 115, 279, 1824
TseFI GTSAC 1 cut(s) 1928
TseI GCWGC 1 cut(s) 1394
Tsp45I GTSAC 1 cut(s) 1928
TspDTI ATGAA 9 cut(s) 471, 543, 912, 1071, 1271, 1652, 1803, 1883, 2018
TspGWI ACGGA 2 cut(s) 836, 2059
TspRI CASTG 3 cut(s) 115, 279, 1824
VneI GTGCAC 5 cut(s) 484, 747, 958, 1353, 1532
VpaK11BI GGWCC 3 cut(s) 425, 467, 622
VspI ATTAAT 1 cut(s) 1569
XceI RCATGY 2 cut(s) 948, 1728
XcmI CCANNNNNNNNNTGG 2 cut(s) 1046, 1940
XmiI GTMKAC 1 cut(s) 2111
XmnI GAANNNNTTC 2 cut(s) 104, 1031
XspI CTAG 4 cut(s) 1101, 1758, 1967, 2013
ZrmI AGTACT 1 cut(s) 1060
Zsp2I ATGCAT 3 cut(s) 142, 946, 1788
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.