MD15G1252700.v1.1

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0000165
Physical Location & Seq
Reverse (-)
21335101 .. 21338110
3010 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1252700.v1.1.491

Sequence Viewer

Length: 1893 bp
ATGGAGGTGAGTAATGAAGCTGAAGCTTACAATCTATGCAACATATATGCCTTTAAGAAAGGTTTTAGTATCCGTAAAGGGAATATTCGAAGAGATTCCCACAATAATGTCCGGCAGCGTGACTTTTTTTGTTCAAAAGAAGGGTTTCAACCAGATGAAGATTTGTGTGAAGTGAAGAAGGTGAGAAGACTAGACACTAGAACAGGCTGTAAGGCTATGATTCGATTCACTGTGGACAATGGCGTGTGGAAGATCAGTCACCTCAACCCAGATCATAATCATGAGTTTGCTAGGCCTGAAGAAAGACAGTTTCTACGATCAGGTAGACATATACCAGGTGTGCGCGCAGCACTCATTAGCTCTATGGTTGATGGGAGTCCAAAACCAACACAATCGTATTCCCTCTTGGGAAAAGAATCTGGCAGCACTGAGAATGTTGGGTCCACTAATAAGGGTTGTCATAATTGTTTGCAAAGGAAGAATGAAGAAATGTTAGAAGGACGGGATGGACAAAGTTTATTAAACTATTTTAGGCATAAACAGGCGGAGGATCCAAACTTTTTTTACAGTGTTCAAGTGGACCAATTTAACCGGGCGACCAATTTTTTCTGGAGAGATAGTAGATCAAAGTTGGATTATGATTGCTTTGGAGATGCTGTATGCTTTGACACCACATTTCGAACCAGGAAATACAATCTCATTTGTGCTCCCTTTGTGGGAGTTAATCACCACTGCAAGAATGTCTTATTTGGTTGTGCTTTTATGTCGGATGTGAGTGCTGACTCAATTACTTGGTTGCTGGAAACATTTATGGTGTCAATGGGAAATAAACAACCGAAAACTATATTCACAGATGAGGATATTGCAATGGGAAATGCAATGGTAAGTATTCTTCCTGAGACACGCCATCGACTATGCATATGGCACATCTCTAAGAACGCTGCACAGTATCTTGGATCTCATAGTACTAATCCTGAGTTCAAGGAGCACTTTAACAAATGCTTTCATGATTGTCTCACTGAAGCTGAATTTGAAGCTACGTGGAATGACATGATTATTAAGTTCAACCTTGAAGGTAATGTGTGGCTGAAAAAGCTATATTCACTTCGGGAAAAATGGTGCCCTGCTTTTAGCTTAGATACTTACACAGCGAATATTAGATCCCCCCATAGAGGCGAGAGCATAACTGGTACTTTTCATCAAGTTTCTACAAAAACAATGGATCTCATTGGTCTTGTCCACCATTACGAGAAAAAAACAAGAGTGCTGCGCACAGCAGAGTTGGAGGAGGATTTTCGTTGTAAAAATGGTACGCCTCATCTTAGAGTAAATAGTGGTATCTTTAAGCATGCATCTGCTGAGTACACTGTCAAAATGTATTCATACTTTGAAAATGAGCTTATGAGTATCTTTGCTGTGAGGATGATAGAAGTTGGTAATGATGGCAACCAATATATTTACGAAGCAATCGAAGAAGGTAATCAAAGAGCCTACATGATTGACTACAACTCCACTACTGCCATGGTTTCGTGTTCTTGTAAGTTATTTGAATCCATGGGGATTTTGTGCCGGCATTCCCTAAAAGTTTTGGACTTAAAAAACTTCACTTGCTTACCACCCCAATACATAATGAAGAGATGGACTAAAGGGGCAAAGAAAAGGGTTGCAGTGAGTGGCGATTCATTTGAGTCGTCATACAAAATGGGGAAATCTTCCCAGTCGTCACGGCTAAGTTCATTGATGCATGAAGCAAATAATGTTTTCAGTGTAGCTGCATTATGTGATTCGGGAACAAGAATCGTCAGACGAAAGTTAGAGGAAGCGATCAAGTTACTTGAAAGTGATGAGGTAACCACTTCCATGGTGGGAAATTTGAGCAAAGTAGATGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE PEARLI-4 SWIM

Protein Analysis

631

Amino Acids

72.24

Weight (kDa)

8.34

Isoelectric Point (pI)

43.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 14 - 97 6.7e-19 FAR1 DNA-binding domain
ZSWIM1-3_RNaseH-like PF21056 183 - 302 2.7e-06 Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain
MULE PF10551 220 - 313 5.3e-25 MULE transposase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000165)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38180
fragaria_vesca FvH4_1g09751 FvH4_1g09751 FvH4_1g09751 FvH4_1g12531 FvH4_1g19193 FvH4_2g07051 FvH4_2g17131 FvH4_2g17131 FvH4_2g28082 FvH4_5g08845 FvH4_5g26361 FvH4_5g26361 FvH4_5g26361 FvH4_5g26361 FvH4_5g39269 FvH4_6g36651 FvH4_6g38410 FvH4_7g04941 FvH4_7g04941
malus_domestica MD00G1156400.v1.1 MD02G1139600.v1.1 MD05G1144600.v1.1 MD06G1002400.v1.1 MD10G1143900.v1.1 MD15G1227300.v1.1 MD15G1252700.v1.1
prunus_persica Prupe.2G147900_v2.0.a1 Prupe.3G257900_v2.0.a1 Prupe.5G003600_v2.0.a1 Prupe.5G053800_v2.0.a1 Prupe.6G011300_v2.0.a1 Prupe.7G161400_v2.0.a1 Prupe.7G161500_v2.0.a1 Prupe.7G188000_v2.0.a1 Prupe.8G182700_v2.0.a1 Prupe.8G182700_v2.0.a1 Prupe.8G182700_v2.0.a1
pyrus_communis pycom02g11030 pycom05g13970 pycom06g00250 pycom10g12390 pycom10g12400 pycom15g20220 pycom15g22260 pycom17g05620
rosa_chinensis RchiOBHm_Chr2g0096701 RchiOBHm_Chr2g0100471 RchiOBHm_Chr2g0100481 RchiOBHm_Chr6g0281561 RchiOBHm_Chr7g0187081 RchiOBHm_Chr7g0217201 RchiOBHm_Chr7g0228321
rosa_laevigata RLG00000001574 RLG00000002527 RLG00000008169 RLG00000011104 RLG00000012963 RLG00000013720 RLG00000014615 RLG00000016663 RLG00000018214 RLG00000018621 RLG00000018622 RLG00000022494
rosa_multiflora Rmu_co8187762.1_g000001 Rmu_co8276569.1_g000001 Rmu_sc0000528.1_g000025 Rmu_sc0001095.1_g000001 Rmu_sc0001095.1_g000002 Rmu_sc0001167.1_g000007 Rmu_sc0001758.1_g000042 Rmu_sc0002147.1_g000004 Rmu_sc0002489.1_g000048 Rmu_sc0002564.1_g000015 Rmu_sc0002902.1_g000037 Rmu_sc0003565.1_g000022 Rmu_sc0003576.1_g000008 Rmu_sc0003720.1_g000022 Rmu_sc0003720.1_g000023 Rmu_sc0003862.1_g000023 Rmu_sc0006475.1_g000009 Rmu_sc0006475.1_g000010 Rmu_sc0006735.1_g000001 Rmu_sc0007586.1_g000004 Rmu_sc0009650.1_g000010 Rmu_sc0010963.1_g000005 Rmu_sc0012557.1_g000002 Rmu_sc0020744.1_g000001 Rmu_sc0020745.1_g000002 Rmu_sc0022201.1_g000001 Rmu_sc0022408.1_g000011 Rmu_sc0023414.1_g000001 Rmu_sc0025101.1_g000001 Rmu_ssc0000211.1_g000015 Rmu_ssc0000240.1_g000012
rosa_roxburghii Rroxscaffold_1G00013940 Rroxscaffold_1G00018420 Rroxscaffold_2G00142210 Rroxscaffold_2G00142230 Rroxscaffold_2G00145400 Rroxscaffold_3G00240120 Rroxscaffold_3G00240150 Rroxscaffold_3G00242500 Rroxscaffold_5G00346610 Rroxscaffold_5G00356000 Rroxscaffold_7G00187000 Rroxscaffold_7G00212120
rosa_rugosa Rorug01G0260900 Rorug01G0446900 Rorug02G0059800 Rorug02G0059900 Rorug02G0088400 Rorug02G0088500 Rorug02G0522300 Rorug03G0234100 Rorug03G0234100 Rorug03G0242400 Rorug04G0109900 Rorug04G0326100 Rorug05G0275900 Rorug06G0141600 Rorug06G0141700 Rorug06G0141700 Rorug07G0167200 Rorug07G0247000 Rorug07G0247000 Rorug07G0247100.1
rosa_samantha Rh1AG046800 Rh1AG111600 Rh1AG242600 Rh1CG226400 Rh1DG086400 Rh2AG107200 Rh2AG138100 Rh2AG528600 Rh2BG109600 Rh2BG141200 Rh2BG273400 Rh2BG357800 Rh2BG640200 Rh2CG111400 Rh2CG143400 Rh2CG161100 Rh2CG251300 Rh2DG111000 Rh2DG142900 Rh2DG651100 Rh3BG318000 Rh4AG167800 Rh4AG253700 Rh5AG282900 Rh6AG254100 Rh6BG257100 Rh6CG256400 Rh6DG248200 Rh7AG306100 Rh7BG297500 Rh7CG325200 Rh7CG420200 Rh7DG306000
rosa_wichuraiana Rw2G008310 Rw2G010790 Rw2G010800 Rw2G013840 Rw2G022430 Rw3G020550 Rw3G024980 Rw3G025930 Rw5G026810 Rw5G035870 Rw6G022060 Rw6G030700 Rw7G007420 Rw7G026010 Rw7G033340 Rw7G037700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1271
AccB1I GGYRCC 1 cut(s) 1119
AccI GTMKAC 1 cut(s) 325
AccII CGCG 1 cut(s) 345
AciI CCGC 1 cut(s) 545
AclWI GGATC 5 cut(s) 545, 558, 964, 1155, 1230
AcsI RAATTY 2 cut(s) 1028, 1870
AcuI CTGAAG 3 cut(s) 42, 318, 1041
AfaI GTAC 4 cut(s) 967, 1192, 1312, 1364
AfiI CCNNNNNNNGG 2 cut(s) 716, 1172
AjnI CCWGG 2 cut(s) 334, 683
AluBI AGCT 9 cut(s) 20, 26, 360, 1025, 1037, 1096, 1134, 1399, 1772
AluI AGCT 9 cut(s) 20, 26, 360, 1025, 1037, 1096, 1134, 1399, 1772
Alw21I GWGCWC 2 cut(s) 709, 990
Alw26I GTCTC 2 cut(s) 893, 1019
AlwI GGATC 5 cut(s) 545, 558, 964, 1155, 1230
AoxI GGCC 1 cut(s) 293
ApeKI GCWGC 6 cut(s) 115, 347, 423, 941, 1267, 1772
ApoI RAATTY 2 cut(s) 1028, 1870
Asp700I GAANNNNTTC 2 cut(s) 94, 144
AspLEI GCGC 3 cut(s) 345, 347, 1272
AspS9I GGNCC 2 cut(s) 441, 580
AsuC2I CCSGG 1 cut(s) 593
AsuHPI GGTGA 4 cut(s) 19, 193, 251, 719
AsuII TTCGAA 2 cut(s) 88, 679
AvaII GGWCC 2 cut(s) 441, 580
BaeGI GKGCMC 1 cut(s) 1124
BamHI GGATCC 1 cut(s) 550
BanI GGYRCC 1 cut(s) 1119
BarI GAAGNNNNNNTAC 2 cut(s) 876, 908
BbsI GAAGAC 1 cut(s) 193
Bbv12I GWGCWC 2 cut(s) 709, 990
BbvI GCAGC 6 cut(s) 127, 359, 435, 928, 1254, 1759
BccI CCATC 5 cut(s) 365, 500, 915, 1436, 1632
BceAI ACGGC 1 cut(s) 1742
BciT130I CCWGG 2 cut(s) 336, 685
BciVI GTATCC 1 cut(s) 80
BcnI CCSGG 1 cut(s) 593
BcoDI GTCTC 2 cut(s) 893, 1019
BfaI CTAG 3 cut(s) 191, 198, 291
BfuI GTATCC 1 cut(s) 80
BisI GCNGC 6 cut(s) 116, 348, 424, 942, 1268, 1773
BlsI GCNGC 6 cut(s) 117, 349, 425, 943, 1269, 1774
BmcAI AGTACT 1 cut(s) 967
Bme1390I CCNGG 3 cut(s) 336, 593, 685
Bme18I GGWCC 2 cut(s) 441, 580
BmgT120I GGNCC 2 cut(s) 441, 580
BmiI GGNNCC 3 cut(s) 442, 552, 1121
BmrFI CCNGG 3 cut(s) 336, 593, 685
BmrI ACTGGG 1 cut(s) 1711
BmsI GCATC 3 cut(s) 643, 1361, 1731
BmuI ACTGGG 1 cut(s) 1711
BpiI GAAGAC 1 cut(s) 193
BpmI CTGGAG 1 cut(s) 631
Bpu14I TTCGAA 2 cut(s) 88, 679
BpuMI CCSGG 1 cut(s) 593
BsaAI YACGTR 1 cut(s) 1041
BsaBI GATNNNNATC 1 cut(s) 276
BsaJI CCNNGG 3 cut(s) 1521, 1554, 1860
BsaXI ACNNNNNCTCC 6 cut(s) 604, 634, 642, 672, 1493, 1523
Bsc4I CCNNNNNNNGG 2 cut(s) 716, 1172
Bse118I RCCGGY 1 cut(s) 1569
Bse1I ACTGG 2 cut(s) 1192, 1717
Bse3DI GCAATG 2 cut(s) 873, 885
Bse8I GATNNNNATC 1 cut(s) 276
BseBI CCWGG 2 cut(s) 336, 685
BseDI CCNNGG 3 cut(s) 1521, 1554, 1860
BseGI GGATG 3 cut(s) 511, 775, 1428
BseJI GATNNNNATC 1 cut(s) 276
BseLI CCNNNNNNNGG 2 cut(s) 716, 1172
BseMI GCAATG 2 cut(s) 873, 885
BseMII CTCAG 4 cut(s) 420, 888, 966, 1350
BseNI ACTGG 2 cut(s) 1192, 1717
BsePI GCGCGC 1 cut(s) 343
BseRI GAGGAG 1 cut(s) 1301
BseSI GKGCMC 1 cut(s) 1124
BseXI GCAGC 6 cut(s) 127, 359, 435, 928, 1254, 1759
BsgI GTGCAG 1 cut(s) 927
Bsh1236I CGCG 1 cut(s) 345
BshFI GGCC 1 cut(s) 295
BshNI GGYRCC 1 cut(s) 1119
BsiHKAI GWGCWC 2 cut(s) 709, 990
BsiSI CCGG 3 cut(s) 112, 592, 1570
BslI CCNNNNNNNGG 2 cut(s) 716, 1172
BsmAI GTCTC 2 cut(s) 893, 1019
BsmI GAATGC 1 cut(s) 1573
BsnI GGCC 1 cut(s) 295
Bsp119I TTCGAA 2 cut(s) 88, 679
Bsp1286I GDGCHC 3 cut(s) 709, 990, 1124
Bsp143I GATC 9 cut(s) 252, 271, 317, 550, 623, 956, 1160, 1222, 1824
Bsp19I CCATGG 3 cut(s) 1521, 1554, 1860
BspACI CCGC 1 cut(s) 545
BspANI GGCC 1 cut(s) 295
BspCNI CTCAG 4 cut(s) 421, 889, 967, 1351
BspFNI CGCG 1 cut(s) 345
BspHI TCATGA 2 cut(s) 280, 1006
BspLI GGNNCC 3 cut(s) 442, 552, 1121
BspPI GGATC 5 cut(s) 545, 558, 964, 1155, 1230
BspT104I TTCGAA 2 cut(s) 88, 679
BspT107I GGYRCC 1 cut(s) 1119
BsrDI GCAATG 2 cut(s) 873, 885
BsrFI RCCGGY 1 cut(s) 1569
BsrI ACTGG 2 cut(s) 1192, 1717
BssAI RCCGGY 1 cut(s) 1569
BssECI CCNNGG 3 cut(s) 1521, 1554, 1860
BssHII GCGCGC 1 cut(s) 343
BssMI GATC 9 cut(s) 252, 271, 317, 550, 623, 956, 1160, 1222, 1824
BssT1I CCWWGG 3 cut(s) 1521, 1554, 1860
Bst2UI CCWGG 2 cut(s) 336, 685
Bst4CI ACNGT 5 cut(s) 232, 309, 569, 948, 1369
Bst6I CTCTTC 2 cut(s) 85, 1628
BstBAI YACGTR 1 cut(s) 1041
BstBI TTCGAA 2 cut(s) 88, 679
BstC8I GCNNGC 3 cut(s) 345, 1350, 1571
BstDEI CTNAG 8 cut(s) 429, 897, 933, 975, 1135, 1322, 1359, 1730
BstDSI CCRYGG 3 cut(s) 1521, 1554, 1860
BstEII GGTNACC 1 cut(s) 1849
BstF5I GGATG 3 cut(s) 511, 775, 1428
BstFNI CGCG 1 cut(s) 345
BstHHI GCGC 3 cut(s) 345, 347, 1272
BstKTI GATC 9 cut(s) 255, 274, 320, 553, 626, 959, 1163, 1225, 1827
BstMAI GTCTC 2 cut(s) 893, 1019
BstMBI GATC 9 cut(s) 252, 271, 317, 550, 623, 956, 1160, 1222, 1824
BstMWI GCNNNNNNNGC 1 cut(s) 1093
BstNI CCWGG 2 cut(s) 336, 685
BstNSI RCATGY 1 cut(s) 1352
BstPI GGTNACC 1 cut(s) 1849
BstSCI CCNGG 3 cut(s) 334, 591, 683
BstSLI GKGCMC 1 cut(s) 1124
BstUI CGCG 1 cut(s) 345
BstV1I GCAGC 6 cut(s) 127, 359, 435, 928, 1254, 1759
BstV2I GAAGAC 1 cut(s) 193
BstX2I RGATCY 4 cut(s) 550, 956, 1160, 1222
BstXI CCANNNNNNTGG 1 cut(s) 1861
BstYI RGATCY 4 cut(s) 550, 956, 1160, 1222
BsuI GTATCC 1 cut(s) 80
BsuRI GGCC 1 cut(s) 295
BtgI CCRYGG 3 cut(s) 1521, 1554, 1860
BtsCI GGATG 3 cut(s) 511, 775, 1428
BtsI GCAGTG 2 cut(s) 730, 1674
BtsIMutI CAGTG 8 cut(s) 228, 426, 574, 730, 1017, 1365, 1674, 1771
Cac8I GCNNGC 3 cut(s) 345, 1350, 1571
CciI TCATGA 2 cut(s) 280, 1006
CfoI GCGC 3 cut(s) 345, 347, 1272
Cfr10I RCCGGY 1 cut(s) 1569
Cfr13I GGNCC 2 cut(s) 441, 580
CsiI ACCWGGT 1 cut(s) 334
Csp6I GTAC 4 cut(s) 966, 1191, 1311, 1363
CviAII CATG 9 cut(s) 281, 1007, 1051, 1349, 1495, 1522, 1555, 1745, 1861
CviQI GTAC 4 cut(s) 966, 1191, 1311, 1363
DdeI CTNAG 8 cut(s) 429, 897, 933, 975, 1135, 1322, 1359, 1730
DpnI GATC 9 cut(s) 254, 273, 319, 552, 625, 958, 1162, 1224, 1826
DpnII GATC 9 cut(s) 252, 271, 317, 550, 623, 956, 1160, 1222, 1824
Eam1104I CTCTTC 2 cut(s) 85, 1628
EarI CTCTTC 2 cut(s) 85, 1628
EciI GGCGGA 1 cut(s) 560
Eco130I CCWWGG 3 cut(s) 1521, 1554, 1860
Eco147I AGGCCT 1 cut(s) 295
Eco47I GGWCC 2 cut(s) 441, 580
Eco57I CTGAAG 3 cut(s) 42, 318, 1041
Eco91I GGTNACC 1 cut(s) 1849
EcoO65I GGTNACC 1 cut(s) 1849
EcoRII CCWGG 2 cut(s) 334, 683
EcoT14I CCWWGG 3 cut(s) 1521, 1554, 1860
EcoT22I ATGCAT 3 cut(s) 920, 1354, 1746
ErhI CCWWGG 3 cut(s) 1521, 1554, 1860
FaeI CATG 9 cut(s) 284, 1010, 1054, 1352, 1498, 1525, 1558, 1748, 1864
FalI AAGNNNNNCTT 4 cut(s) 728, 760, 974, 1006
FatI CATG 9 cut(s) 280, 1006, 1050, 1348, 1494, 1521, 1554, 1744, 1860
FauNDI CATATG 1 cut(s) 920
FblI GTMKAC 1 cut(s) 325
Fnu4HI GCNGC 6 cut(s) 116, 348, 424, 942, 1268, 1773
FokI GGATG 3 cut(s) 518, 782, 1435
Fsp4HI GCNGC 6 cut(s) 116, 348, 424, 942, 1268, 1773
FspBI CTAG 3 cut(s) 191, 198, 291
FspI TGCGCA 1 cut(s) 1271
GlaI GCGC 3 cut(s) 344, 346, 1271
GluI GCNGC 6 cut(s) 116, 348, 424, 942, 1268, 1773
GsuI CTGGAG 1 cut(s) 631
HaeIII GGCC 1 cut(s) 295
HapII CCGG 3 cut(s) 112, 592, 1570
HhaI GCGC 3 cut(s) 345, 347, 1272
Hin1II CATG 9 cut(s) 284, 1010, 1054, 1352, 1498, 1525, 1558, 1748, 1864
Hin6I GCGC 3 cut(s) 343, 345, 1270
HinP1I GCGC 3 cut(s) 343, 345, 1270
HindIII AAGCTT 1 cut(s) 24
HpaII CCGG 3 cut(s) 112, 592, 1570
HphI GGTGA 4 cut(s) 19, 193, 251, 719
Hpy166II GTNNAC 6 cut(s) 235, 326, 444, 580, 1240, 1365
Hpy188I TCNGA 2 cut(s) 769, 1805
Hpy188III TCNNGA 7 cut(s) 281, 610, 896, 974, 1007, 1109, 1788
Hpy8I GTNNAC 6 cut(s) 235, 326, 444, 580, 1240, 1365
HpyAV CCTTC 5 cut(s) 134, 172, 491, 1067, 1469
HpyCH4III ACNGT 5 cut(s) 232, 309, 569, 948, 1369
HpyCH4IV ACGT 1 cut(s) 1040
HpyF10VI GCNNNNNNNGC 1 cut(s) 1093
HpyF3I CTNAG 8 cut(s) 429, 897, 933, 975, 1135, 1322, 1359, 1730
HpySE526I ACGT 1 cut(s) 1040
Hsp92II CATG 9 cut(s) 284, 1010, 1054, 1352, 1498, 1525, 1558, 1748, 1864
HspAI GCGC 3 cut(s) 343, 345, 1270
KroI GCCGGC 1 cut(s) 1569
KroNI GCCGGC 1 cut(s) 1571
Kzo9I GATC 9 cut(s) 252, 271, 317, 550, 623, 956, 1160, 1222, 1824
LmnI GCTCC 2 cut(s) 712, 985
Lsp1109I GCAGC 6 cut(s) 127, 359, 435, 928, 1254, 1759
LweI GCATC 3 cut(s) 643, 1361, 1731
MabI ACCWGGT 1 cut(s) 334
MaeI CTAG 3 cut(s) 191, 198, 291
MaeII ACGT 1 cut(s) 1040
MaeIII GTNAC 5 cut(s) 119, 257, 1722, 1830, 1849
MalI GATC 9 cut(s) 254, 273, 319, 552, 625, 958, 1162, 1224, 1826
MboI GATC 9 cut(s) 252, 271, 317, 550, 623, 956, 1160, 1222, 1824
MflI RGATCY 4 cut(s) 550, 956, 1160, 1222
MhlI GDGCHC 3 cut(s) 709, 990, 1124
MluCI AATT 6 cut(s) 463, 584, 601, 786, 1028, 1870
MlyI GAGTC 3 cut(s) 385, 776, 1697
MmeI TCCRAC 3 cut(s) 612, 747, 1263
Mph1103I ATGCAT 3 cut(s) 920, 1354, 1746
MroNI GCCGGC 1 cut(s) 1569
MroXI GAANNNNTTC 2 cut(s) 94, 144
MseI TTAA 8 cut(s) 54, 521, 588, 723, 993, 1059, 1344, 1595
MslI CAYNNNNRTG 3 cut(s) 105, 279, 1859
MspI CCGG 3 cut(s) 112, 592, 1570
MspR9I CCNGG 3 cut(s) 336, 593, 685
Mva1269I GAATGC 1 cut(s) 1573
MvaI CCWGG 2 cut(s) 336, 685
MvnI CGCG 1 cut(s) 345
MwoI GCNNNNNNNGC 1 cut(s) 1093
NaeI GCCGGC 1 cut(s) 1571
NciI CCSGG 1 cut(s) 593
NcoI CCATGG 3 cut(s) 1521, 1554, 1860
NdeI CATATG 1 cut(s) 920
NdeII GATC 9 cut(s) 252, 271, 317, 550, 623, 956, 1160, 1222, 1824
NgoMIV GCCGGC 1 cut(s) 1569
NlaIII CATG 9 cut(s) 284, 1010, 1054, 1352, 1498, 1525, 1558, 1748, 1864
NlaIV GGNNCC 3 cut(s) 442, 552, 1121
NmuCI GTSAC 3 cut(s) 119, 257, 1722
NsbI TGCGCA 1 cut(s) 1271
NsiI ATGCAT 3 cut(s) 920, 1354, 1746
NspI RCATGY 1 cut(s) 1352
NspV TTCGAA 2 cut(s) 88, 679
PaeI GCATGC 1 cut(s) 1352
PagI TCATGA 2 cut(s) 280, 1006
PauI GCGCGC 1 cut(s) 343
PceI AGGCCT 1 cut(s) 295
PcsI WCGNNNNNNNCGW 1 cut(s) 1467
PctI GAATGC 1 cut(s) 1573
PdiI GCCGGC 1 cut(s) 1571
PdmI GAANNNNTTC 2 cut(s) 94, 144
PfeI GAWTC 8 cut(s) 95, 220, 225, 416, 1550, 1679, 1784, 1797
PkrI GCNGC 6 cut(s) 117, 349, 425, 943, 1269, 1774
PleI GAGTC 3 cut(s) 384, 776, 1696
PpsI GAGTC 3 cut(s) 384, 776, 1696
Ppu21I YACGTR 1 cut(s) 1041
Psp6I CCWGG 2 cut(s) 334, 683
PspEI GGTNACC 1 cut(s) 1849
PspGI CCWGG 2 cut(s) 334, 683
PspN4I GGNNCC 3 cut(s) 442, 552, 1121
PspPI GGNCC 2 cut(s) 441, 580
PsuI RGATCY 4 cut(s) 550, 956, 1160, 1222
PteI GCGCGC 1 cut(s) 343
RsaI GTAC 4 cut(s) 967, 1192, 1312, 1364
RsaNI GTAC 4 cut(s) 966, 1191, 1311, 1363
RseI CAYNNNNRTG 3 cut(s) 105, 279, 1859
SaqAI TTAA 8 cut(s) 54, 521, 588, 723, 993, 1059, 1344, 1595
SatI GCNGC 6 cut(s) 116, 348, 424, 942, 1268, 1773
Sau3AI GATC 9 cut(s) 252, 271, 317, 550, 623, 956, 1160, 1222, 1824
Sau96I GGNCC 2 cut(s) 441, 580
ScaI AGTACT 1 cut(s) 967
SchI GAGTC 3 cut(s) 385, 776, 1697
ScrFI CCNGG 3 cut(s) 336, 593, 685
SduI GDGCHC 3 cut(s) 709, 990, 1124
SexAI ACCWGGT 1 cut(s) 334
SfaNI GCATC 3 cut(s) 643, 1361, 1731
SfuI TTCGAA 2 cut(s) 88, 679
SinI GGWCC 2 cut(s) 441, 580
SmiMI CAYNNNNRTG 3 cut(s) 105, 279, 1859
SphI GCATGC 1 cut(s) 1352
Sse9I AATT 6 cut(s) 463, 584, 601, 786, 1028, 1870
SseBI AGGCCT 1 cut(s) 295
SsiI CCGC 1 cut(s) 545
SspI AATATT 2 cut(s) 85, 1156
SspMI CTAG 3 cut(s) 191, 198, 291
StuI AGGCCT 1 cut(s) 295
StyD4I CCNGG 3 cut(s) 334, 591, 683
StyI CCWWGG 3 cut(s) 1521, 1554, 1860
TaaI ACNGT 5 cut(s) 232, 309, 569, 948, 1369
TaiI ACGT 1 cut(s) 1043
TaqI TCGA 5 cut(s) 88, 223, 679, 910, 1470
TasI AATT 6 cut(s) 463, 584, 601, 786, 1028, 1870
TatI WGTACW 2 cut(s) 965, 1362
TfiI GAWTC 8 cut(s) 95, 220, 225, 416, 1550, 1679, 1784, 1797
Tru1I TTAA 8 cut(s) 54, 521, 588, 723, 993, 1059, 1344, 1595
Tru9I TTAA 8 cut(s) 54, 521, 588, 723, 993, 1059, 1344, 1595
TscAI CASTG 8 cut(s) 235, 433, 574, 737, 1024, 1372, 1674, 1771
TseFI GTSAC 3 cut(s) 119, 257, 1722
TseI GCWGC 6 cut(s) 115, 347, 423, 941, 1267, 1772
Tsp45I GTSAC 3 cut(s) 119, 257, 1722
TspGWI ACGGA 1 cut(s) 62
TspRI CASTG 8 cut(s) 235, 433, 574, 737, 1024, 1372, 1674, 1771
VpaK11BI GGWCC 2 cut(s) 441, 580
XapI RAATTY 2 cut(s) 1028, 1870
XceI RCATGY 1 cut(s) 1352
XcmI CCANNNNNNNNNTGG 2 cut(s) 1519, 1861
XmiI GTMKAC 1 cut(s) 325
XmnI GAANNNNTTC 2 cut(s) 94, 144
XspI CTAG 3 cut(s) 191, 198, 291
ZrmI AGTACT 1 cut(s) 967
Zsp2I ATGCAT 3 cut(s) 920, 1354, 1746
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.