FvH4_2g17131

Protein FAR1-RELATED SEQUENCE 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000165
Physical Location & Seq
Forward (+)
14856673 .. 14860286
3614 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g17131.t1

Sequence Viewer

Length: 2376 bp
ATGGATAATGAGATGATTGAATTCGATATCGGGTTGGGAGGCAGGGAAGGGGATGATGATTTTGTCGAAATTGAGCACCCTGTCGAAGATGAGGAGATGGTTGATAGCCCTCTGATTGGGAGTGCTAGTGGGAGTGTCAATGGCATCGGGTTTAGTGGAGGGAGTGGTGAGATTTACCTCCCTGAGGGGGACCTGTTGGACCTTGAGCCTTATGATGGCATGGAGTTTGAGTCTGAGGAGGCTGCCAAGGCCTTTTACAATTCATATGCCCGCCGTGTTGGGTTTAGCACTCGTGTCAGCTCCTCGCGGCGTTCCAGGCGCGATGGGGCGATCATACAGAGGCAATTTGTTTGTGCTAAGGAGGGGTTTAGGAATTTGAATGAGAAGCGGACCAAGGATAGGGAGATCAAGCGGCCGAGGACTATCACTAGAGTGGGATGCAAAGCGTCCATGTCTGTGAAGATGCAAGACTCGGGGAAATGGGTTGTGTCTGGTTTTGTTAAGGAGCATAATCATGAGTTGGTTCCTCCTGATCAGGTGCATTGTCTTCGGTCGCACAGGCAAATATCTGGTTCTGCTAAGACCTTGATTGATACACTGCAGGCAGCTGGAATGGGTCCCAGGAGGATCATGTCAGCACTGATTAAAGAGTATGGTGGAATCAGCAAAGTTGGATTTACAGAGGTTGACTGTAGGAATTACATGAGGAATAATCGCCAGAGGAGCTTGGATGGGGACATTCAGATGCTATTGGATTATTTGAGACAAATGCAAGCAGATAACCAGAACTTTTTCTATGCTGTTCAAGGTGATGAGGACCAGGCCATGGGCAATGTCATCTGGGCAGATCCAAAGGCAAAGATGAACTATAATTACTTTGGTGATACTGTTACGTTTGATACTACCTACAGGTCGAACAGGTACCGTTTGCCCTTTGCACCTATCACAGGGATAAACCATCATGGACAGCCTGTATTGTTTGGTTGTGCTTTTCTGATAAATGAGTCTGAAGCATCTTTTGTTTGGCTGTTTAAAACATGGCTTATGGCAATGTCAGGACGCCCTCCATTGTCAATTACCACTGACTATGATCCTATGATACAGTCAGCTATCATGCAGGTCTTCCCACAGACTCGTCACCGGTTCTGCAAATGGCACATTTTCAAAAAATGCCAGGAGAAACTATCCCATGTGTTTCTTCAACATCCAAATTTTGAAGCAGACTTCCACAAATGTGTCAATTTGACCGAGTCAATAGAAGAATTTGAGTCTTGCTGGTTGTCTCTTGTTGATAGATATGATCTCAGGGATCATGAATGGCTTCAAACGGTGTACTCTGCTCGCAGGCAGTGGGTCCCTGTCTATCTCCGTGACACCTTTTTTGCAGAAATGTCCATAACTCAGAGAAGTGATAGTATGAACTCATATTTTGATGGTTATGTGAATGCTTCAACGAATCTGAGTCAGTTCTTTAAGCTCTATGAGAAAGCTCTAGAGAGTCGCAATGAGAAAGAAGTGAAAGCAGATTTTGATACGATGAACACTTCCCCAGTTTTGAAGACCCCATCTCCAATGGAAAAGCAAGCCTCTGAGTTTTACACAAAAAAGATATTTATGAGGTTTCAAGAGGAGCTAGTTGGGACATTAACTTTCACAGCATCCAAGGGCGATGATGATGGGGAGTTCATCTCATATCAAGTAGCGAAATTCGGGGAGGACCATAAAGCATATTATGTTAAACTAAATGTTCTGGAGATGATAGCAAATTGCAGTTGCCAGATGTTTGAGTTTTCTGGTCTTCTTTGCAGACATGTATTAGCAGTCTTTCGAGTGACCAATGTGTTAACTCTGCCACCTCATTACGTATTGAAACGATGGACAAGAAATGCCAAGAGCAGTGTTATATTAGAAGAACGTTCTAGTGATGTATATACCAATTATCTAGAATCTCATACAGTTAGATACAATACTTTACGCCATCAGGCCTTTAAATTTGTAGATGGAGCGAAGTCTTCAGAAACTTACGACCTTGCCCTGGAAGCTTTGAAAGAAGCTGCAACAAAAGTGGCGCATGCAATAAAGAATGATGGGAGAAATGTCATGTTGAATGGGCATATCAGAGGAAACTTGGTTGGTGGTGGAAGTCGGGCCAATTATACCATTGGGGATCATGATGAGAGTTCTGGCCAGAATTTGTCCGAGGATGATATGGACAAAAAAATTCGGGAAATTACAAATGAGCTGGAGTGTGCTAATCGAAAGTGTGAAGTTTATCGAGCTAACCTGCTTTCACTTTTGAAAGACATTGAAGATCATAAGTTGCAGTTGTCAATTAAAGTGGAAAACATTAAGATTAGCATGAAAGACGGCTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

792

Amino Acids

90.67

Weight (kDa)

5.99

Isoelectric Point (pI)

46.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 85 - 176 4.5e-34 FAR1 DNA-binding domain
MULE PF10551 297 - 390 2.9e-30 MULE transposase domain
SWIM PF04434 585 - 610 3.2e-09 SWIM zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000165)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38180
fragaria_vesca FvH4_1g09751 FvH4_1g09751 FvH4_1g09751 FvH4_1g12531 FvH4_1g19193 FvH4_2g07051 FvH4_2g17131 FvH4_2g17131 FvH4_2g28082 FvH4_5g08845 FvH4_5g26361 FvH4_5g26361 FvH4_5g26361 FvH4_5g26361 FvH4_5g39269 FvH4_6g36651 FvH4_6g38410 FvH4_7g04941 FvH4_7g04941
malus_domestica MD00G1156400.v1.1 MD02G1139600.v1.1 MD05G1144600.v1.1 MD06G1002400.v1.1 MD10G1143900.v1.1 MD15G1227300.v1.1 MD15G1252700.v1.1
prunus_persica Prupe.2G147900_v2.0.a1 Prupe.3G257900_v2.0.a1 Prupe.5G003600_v2.0.a1 Prupe.5G053800_v2.0.a1 Prupe.6G011300_v2.0.a1 Prupe.7G161400_v2.0.a1 Prupe.7G161500_v2.0.a1 Prupe.7G188000_v2.0.a1 Prupe.8G182700_v2.0.a1 Prupe.8G182700_v2.0.a1 Prupe.8G182700_v2.0.a1
pyrus_communis pycom02g11030 pycom05g13970 pycom06g00250 pycom10g12390 pycom10g12400 pycom15g20220 pycom15g22260 pycom17g05620
rosa_chinensis RchiOBHm_Chr2g0096701 RchiOBHm_Chr2g0100471 RchiOBHm_Chr2g0100481 RchiOBHm_Chr6g0281561 RchiOBHm_Chr7g0187081 RchiOBHm_Chr7g0217201 RchiOBHm_Chr7g0228321
rosa_laevigata RLG00000001574 RLG00000002527 RLG00000008169 RLG00000011104 RLG00000012963 RLG00000013720 RLG00000014615 RLG00000016663 RLG00000018214 RLG00000018621 RLG00000018622 RLG00000022494
rosa_multiflora Rmu_co8187762.1_g000001 Rmu_co8276569.1_g000001 Rmu_sc0000528.1_g000025 Rmu_sc0001095.1_g000001 Rmu_sc0001095.1_g000002 Rmu_sc0001167.1_g000007 Rmu_sc0001758.1_g000042 Rmu_sc0002147.1_g000004 Rmu_sc0002489.1_g000048 Rmu_sc0002564.1_g000015 Rmu_sc0002902.1_g000037 Rmu_sc0003565.1_g000022 Rmu_sc0003576.1_g000008 Rmu_sc0003720.1_g000022 Rmu_sc0003720.1_g000023 Rmu_sc0003862.1_g000023 Rmu_sc0006475.1_g000009 Rmu_sc0006475.1_g000010 Rmu_sc0006735.1_g000001 Rmu_sc0007586.1_g000004 Rmu_sc0009650.1_g000010 Rmu_sc0010963.1_g000005 Rmu_sc0012557.1_g000002 Rmu_sc0020744.1_g000001 Rmu_sc0020745.1_g000002 Rmu_sc0022201.1_g000001 Rmu_sc0022408.1_g000011 Rmu_sc0023414.1_g000001 Rmu_sc0025101.1_g000001 Rmu_ssc0000211.1_g000015 Rmu_ssc0000240.1_g000012
rosa_roxburghii Rroxscaffold_1G00013940 Rroxscaffold_1G00018420 Rroxscaffold_2G00142210 Rroxscaffold_2G00142230 Rroxscaffold_2G00145400 Rroxscaffold_3G00240120 Rroxscaffold_3G00240150 Rroxscaffold_3G00242500 Rroxscaffold_5G00346610 Rroxscaffold_5G00356000 Rroxscaffold_7G00187000 Rroxscaffold_7G00212120
rosa_rugosa Rorug01G0260900 Rorug01G0446900 Rorug02G0059800 Rorug02G0059900 Rorug02G0088400 Rorug02G0088500 Rorug02G0522300 Rorug03G0234100 Rorug03G0234100 Rorug03G0242400 Rorug04G0109900 Rorug04G0326100 Rorug05G0275900 Rorug06G0141600 Rorug06G0141700 Rorug06G0141700 Rorug07G0167200 Rorug07G0247000 Rorug07G0247000 Rorug07G0247100.1
rosa_samantha Rh1AG046800 Rh1AG111600 Rh1AG242600 Rh1CG226400 Rh1DG086400 Rh2AG107200 Rh2AG138100 Rh2AG528600 Rh2BG109600 Rh2BG141200 Rh2BG273400 Rh2BG357800 Rh2BG640200 Rh2CG111400 Rh2CG143400 Rh2CG161100 Rh2CG251300 Rh2DG111000 Rh2DG142900 Rh2DG651100 Rh3BG318000 Rh4AG167800 Rh4AG253700 Rh5AG282900 Rh6AG254100 Rh6BG257100 Rh6CG256400 Rh6DG248200 Rh7AG306100 Rh7BG297500 Rh7CG325200 Rh7CG420200 Rh7DG306000
rosa_wichuraiana Rw2G008310 Rw2G010790 Rw2G010800 Rw2G013840 Rw2G022430 Rw3G020550 Rw3G024980 Rw3G025930 Rw5G026810 Rw5G035870 Rw6G022060 Rw6G030700 Rw7G007420 Rw7G026010 Rw7G033340 Rw7G037700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 1108, 2292
Acc65I GGTACC 1 cut(s) 921
AccB1I GGYRCC 1 cut(s) 921
AccB7I CCANNNNNTGG 1 cut(s) 826
AccII CGCG 2 cut(s) 307, 321
AciI CCGC 4 cut(s) 271, 307, 388, 412
AclI AACGTT 1 cut(s) 1915
AclWI GGATC 5 cut(s) 635, 842, 1085, 1317, 2175
AcoI YGGCCR 2 cut(s) 413, 2185
AcsI RAATTY 8 cut(s) 20, 373, 1210, 1262, 1706, 1991, 2191, 2220
AcuI CTGAAG 2 cut(s) 1029, 1998
AcyI GRCGYC 1 cut(s) 1060
AfaI GTAC 2 cut(s) 923, 1334
AfiI CCNNNNNNNGG 8 cut(s) 116, 184, 187, 215, 399, 826, 947, 2035
AflIII ACRYGT 1 cut(s) 1810
AgeI ACCGGT 1 cut(s) 1140
AjnI CCWGG 5 cut(s) 314, 620, 819, 1173, 2034
AleI CACNNNNGTG 2 cut(s) 431, 1233
Alw21I GWGCWC 1 cut(s) 78
Alw26I GTCTC 2 cut(s) 757, 1287
AlwI GGATC 5 cut(s) 635, 842, 1085, 1317, 2175
Ama87I CYCGRG 1 cut(s) 472
AoxI GGCC 6 cut(s) 249, 413, 822, 1983, 2148, 2185
ApeKI GCWGC 3 cut(s) 242, 605, 2054
ApoI RAATTY 8 cut(s) 20, 373, 1210, 1262, 1706, 1991, 2191, 2220
ArsI GACNNNNNNTTYG 2 cut(s) 1364, 1396
AsiGI ACCGGT 1 cut(s) 1140
Asp700I GAANNNNTTC 2 cut(s) 791, 1320
Asp718I GGTACC 1 cut(s) 921
AspLEI GCGC 2 cut(s) 321, 2071
AspS9I GGNCC 8 cut(s) 190, 199, 390, 617, 817, 1354, 1717, 2148
AsuHPI GGTGA 4 cut(s) 179, 821, 893, 1130
AvaI CYCGRG 1 cut(s) 472
AvaII GGWCC 7 cut(s) 190, 199, 390, 617, 817, 1354, 1717
AxyI CCTNAGG 1 cut(s) 183
BalI TGGCCA 1 cut(s) 2187
BanI GGYRCC 1 cut(s) 921
BauI CACGAG 1 cut(s) 291
BbsI GAAGAC 5 cut(s) 539, 1114, 1565, 1790, 2004
Bbv12I GWGCWC 1 cut(s) 78
BbvI GCAGC 3 cut(s) 229, 617, 2041
BceAI ACGGC 1 cut(s) 258
BcgI CGANNNNNNTGC 2 cut(s) 530, 564
BciT130I CCWGG 5 cut(s) 316, 622, 821, 1175, 2036
BclI TGATCA 1 cut(s) 532
BcoDI GTCTC 2 cut(s) 757, 1287
BfaI CTAG 6 cut(s) 126, 429, 1493, 1634, 1920, 1943
BfmI CTRYAG 3 cut(s) 599, 691, 907
BfuAI ACCTGC 2 cut(s) 1108, 2292
BisI GCNGC 5 cut(s) 243, 308, 413, 606, 2055
BlsI GCNGC 5 cut(s) 244, 309, 414, 607, 2056
Bme1390I CCNGG 5 cut(s) 316, 622, 821, 1175, 2036
Bme18I GGWCC 7 cut(s) 190, 199, 390, 617, 817, 1354, 1717
BmeT110I CYCGRG 1 cut(s) 472
BmgT120I GGNCC 8 cut(s) 190, 199, 390, 617, 817, 1354, 1717, 2148
BmiI GGNNCC 7 cut(s) 191, 525, 618, 619, 923, 1355, 1356
BmrFI CCNGG 5 cut(s) 316, 622, 821, 1175, 2036
BmrI ACTGGG 1 cut(s) 1544
BmsI GCATC 6 cut(s) 153, 428, 453, 735, 1022, 1667
BmuI ACTGGG 1 cut(s) 1544
BpiI GAAGAC 5 cut(s) 539, 1114, 1565, 1790, 2004
BplI GAGNNNNNCTC 2 cut(s) 1673, 1705
BpmI CTGGAG 2 cut(s) 1772, 2264
Bpu10I CCTNAGC 1 cut(s) 357
BpuEI CTTGAG 1 cut(s) 224
BsaAI YACGTR 1 cut(s) 1864
BsaHI GRCGYC 1 cut(s) 1060
BsaJI CCNNGG 8 cut(s) 246, 393, 416, 620, 825, 1662, 2034, 2199
BsaWI WCCGGW 1 cut(s) 1140
BsaXI ACNNNNNCTCC 6 cut(s) 112, 142, 215, 245, 1552, 1582
Bsc4I CCNNNNNNNGG 8 cut(s) 116, 184, 187, 215, 399, 826, 947, 2035
Bse118I RCCGGY 1 cut(s) 1140
Bse1I ACTGG 1 cut(s) 1550
Bse21I CCTNAGG 1 cut(s) 183
Bse3DI GCAATG 3 cut(s) 838, 1056, 1510
BseBI CCWGG 5 cut(s) 316, 622, 821, 1175, 2036
BseDI CCNNGG 8 cut(s) 246, 393, 416, 620, 825, 1662, 2034, 2199
BseGI GGATG 6 cut(s) 58, 443, 736, 1204, 1658, 2209
BseLI CCNNNNNNNGG 8 cut(s) 116, 184, 187, 215, 399, 826, 947, 2035
BseMI GCAATG 3 cut(s) 838, 1056, 1510
BseMII CTCAG 6 cut(s) 174, 225, 1318, 1415, 1451, 1581
BseNI ACTGG 1 cut(s) 1550
BseRI GAGGAG 5 cut(s) 107, 251, 292, 736, 1643
BseX3I CGGCCG 1 cut(s) 413
BseXI GCAGC 3 cut(s) 229, 617, 2041
Bsh1236I CGCG 2 cut(s) 307, 321
Bsh1285I CGRYCG 2 cut(s) 416, 554
BshFI GGCC 6 cut(s) 251, 415, 824, 1985, 2150, 2187
BshNI GGYRCC 1 cut(s) 921
BshTI ACCGGT 1 cut(s) 1140
BsiEI CGRYCG 2 cut(s) 416, 554
BsiHKAI GWGCWC 1 cut(s) 78
BsiHKCI CYCGRG 1 cut(s) 472
BsiSI CCGG 1 cut(s) 1141
BslFI GGGAC 5 cut(s) 203, 603, 749, 1340, 1654
BslI CCNNNNNNNGG 8 cut(s) 116, 184, 187, 215, 399, 826, 947, 2035
BsmAI GTCTC 2 cut(s) 757, 1287
BsmFI GGGAC 5 cut(s) 203, 603, 749, 1340, 1654
BsmI GAATGC 1 cut(s) 1450
BsnI GGCC 6 cut(s) 251, 415, 824, 1985, 2150, 2187
BsoBI CYCGRG 1 cut(s) 472
Bsp1286I GDGCHC 1 cut(s) 78
Bsp19I CCATGG 1 cut(s) 825
BspACI CCGC 4 cut(s) 271, 307, 388, 412
BspANI GGCC 6 cut(s) 251, 415, 824, 1985, 2150, 2187
BspCNI CTCAG 6 cut(s) 175, 226, 1317, 1414, 1452, 1582
BspFNI CGCG 2 cut(s) 307, 321
BspHI TCATGA 3 cut(s) 514, 1312, 2170
BspLI GGNNCC 7 cut(s) 191, 525, 618, 619, 923, 1355, 1356
BspMAI CTGCAG 1 cut(s) 603
BspMI ACCTGC 2 cut(s) 1108, 2292
BspPI GGATC 5 cut(s) 635, 842, 1085, 1317, 2175
BspT107I GGYRCC 1 cut(s) 921
BsrDI GCAATG 3 cut(s) 838, 1056, 1510
BsrFI RCCGGY 1 cut(s) 1140
BsrI ACTGG 1 cut(s) 1550
BssAI RCCGGY 1 cut(s) 1140
BssECI CCNNGG 8 cut(s) 246, 393, 416, 620, 825, 1662, 2034, 2199
BssNI GRCGYC 1 cut(s) 1060
BssSI CACGAG 1 cut(s) 291
BssT1I CCWWGG 4 cut(s) 246, 393, 825, 1662
Bst2BI CACGAG 1 cut(s) 291
Bst2UI CCWGG 5 cut(s) 316, 622, 821, 1175, 2036
Bst4CI ACNGT 6 cut(s) 692, 889, 926, 1104, 1330, 1957
BstACI GRCGYC 1 cut(s) 1060
BstBAI YACGTR 1 cut(s) 1864
BstC8I GCNNGC 7 cut(s) 271, 603, 774, 1342, 1346, 1584, 2073
BstDEI CTNAG 8 cut(s) 183, 234, 357, 579, 1304, 1401, 1460, 1590
BstDSI CCRYGG 1 cut(s) 825
BstENI CCTNNNNNAGG 2 cut(s) 182, 945
BstF5I GGATG 6 cut(s) 58, 443, 736, 1204, 1658, 2209
BstFNI CGCG 2 cut(s) 307, 321
BstHHI GCGC 2 cut(s) 321, 2071
BstMAI GTCTC 2 cut(s) 757, 1287
BstMCI CGRYCG 2 cut(s) 416, 554
BstMWI GCNNNNNNNGC 4 cut(s) 248, 316, 723, 2039
BstNI CCWGG 5 cut(s) 316, 622, 821, 1175, 2036
BstNSI RCATGY 2 cut(s) 1814, 2075
BstSCI CCNGG 5 cut(s) 314, 620, 819, 1173, 2034
BstSFI CTRYAG 3 cut(s) 599, 691, 907
BstSNI TACGTA 1 cut(s) 1864
BstUI CGCG 2 cut(s) 307, 321
BstV1I GCAGC 3 cut(s) 229, 617, 2041
BstV2I GAAGAC 5 cut(s) 539, 1114, 1565, 1790, 2004
BstX2I RGATCY 1 cut(s) 847
BstYI RGATCY 1 cut(s) 847
BstZI CGGCCG 1 cut(s) 413
Bsu36I CCTNAGG 1 cut(s) 183
BsuRI GGCC 6 cut(s) 251, 415, 824, 1985, 2150, 2187
BtgI CCRYGG 1 cut(s) 825
BtgZI GCGATG 2 cut(s) 336, 1683
BtsCI GGATG 6 cut(s) 58, 443, 736, 1204, 1658, 2209
BtsI GCAGTG 3 cut(s) 596, 1355, 1903
BtsIMutI CAGTG 5 cut(s) 596, 638, 1080, 1355, 1903
BveI ACCTGC 2 cut(s) 1108, 2292
Cac8I GCNNGC 7 cut(s) 271, 603, 774, 1342, 1346, 1584, 2073
CciI TCATGA 3 cut(s) 514, 1312, 2170
CfoI GCGC 2 cut(s) 321, 2071
Cfr10I RCCGGY 1 cut(s) 1140
Cfr13I GGNCC 8 cut(s) 190, 199, 390, 617, 817, 1354, 1717, 2148
CseI GACGC 2 cut(s) 435, 1068
Csp6I GTAC 2 cut(s) 922, 1333
CspAI ACCGGT 1 cut(s) 1140
CspCI CAANNNNNGTGG 4 cut(s) 2046, 2081, 2319, 2354
CviQI GTAC 2 cut(s) 922, 1333
DdeI CTNAG 8 cut(s) 183, 234, 357, 579, 1304, 1401, 1460, 1590
DraI TTTAAA 2 cut(s) 1033, 1990
EaeI YGGCCR 2 cut(s) 413, 2185
EagI CGGCCG 1 cut(s) 413
EclXI CGGCCG 1 cut(s) 413
Eco105I TACGTA 1 cut(s) 1864
Eco130I CCWWGG 4 cut(s) 246, 393, 825, 1662
Eco147I AGGCCT 2 cut(s) 251, 1985
Eco32I GATATC 1 cut(s) 28
Eco47I GGWCC 7 cut(s) 190, 199, 390, 617, 817, 1354, 1717
Eco52I CGGCCG 1 cut(s) 413
Eco57I CTGAAG 2 cut(s) 1029, 1998
Eco81I CCTNAGG 1 cut(s) 183
Eco88I CYCGRG 1 cut(s) 472
EcoNI CCTNNNNNAGG 2 cut(s) 182, 945
EcoO109I RGGNCCY 3 cut(s) 190, 617, 1354
EcoRI GAATTC 1 cut(s) 20
EcoRII CCWGG 5 cut(s) 314, 620, 819, 1173, 2034
EcoRV GATATC 1 cut(s) 28
EcoT14I CCWWGG 4 cut(s) 246, 393, 825, 1662
ErhI CCWWGG 4 cut(s) 246, 393, 825, 1662
FaqI GGGAC 5 cut(s) 203, 603, 749, 1340, 1654
FauI CCCGC 1 cut(s) 278
FauNDI CATATG 1 cut(s) 265
FbaI TGATCA 1 cut(s) 532
Fnu4HI GCNGC 5 cut(s) 243, 308, 413, 606, 2055
FokI GGATG 6 cut(s) 65, 450, 743, 1191, 1645, 2216
Fsp4HI GCNGC 5 cut(s) 243, 308, 413, 606, 2055
FspBI CTAG 6 cut(s) 126, 429, 1493, 1634, 1920, 1943
GlaI GCGC 2 cut(s) 320, 2070
GluI GCNGC 5 cut(s) 243, 308, 413, 606, 2055
GsuI CTGGAG 2 cut(s) 1772, 2264
HaeIII GGCC 6 cut(s) 251, 415, 824, 1985, 2150, 2187
HapII CCGG 1 cut(s) 1141
HgaI GACGC 2 cut(s) 435, 1068
HhaI GCGC 2 cut(s) 321, 2071
Hin1I GRCGYC 1 cut(s) 1060
Hin6I GCGC 2 cut(s) 319, 2069
HinP1I GCGC 2 cut(s) 319, 2069
HincII GTYRAC 2 cut(s) 688, 1845
HindII GTYRAC 2 cut(s) 688, 1845
HindIII AAGCTT 1 cut(s) 2040
HpaI GTTAAC 1 cut(s) 1845
HpaII CCGG 1 cut(s) 1141
HphI GGTGA 4 cut(s) 179, 821, 893, 1130
Hpy166II GTNNAC 3 cut(s) 688, 1333, 1845
Hpy8I GTNNAC 3 cut(s) 688, 1333, 1845
HpyAV CCTTC 1 cut(s) 41
HpyCH4III ACNGT 6 cut(s) 692, 889, 926, 1104, 1330, 1957
HpyCH4IV ACGT 3 cut(s) 893, 1863, 1915
HpyF10VI GCNNNNNNNGC 4 cut(s) 248, 316, 723, 2039
HpyF3I CTNAG 8 cut(s) 183, 234, 357, 579, 1304, 1401, 1460, 1590
HpySE526I ACGT 3 cut(s) 893, 1863, 1915
Hsp92I GRCGYC 1 cut(s) 1060
HspAI GCGC 2 cut(s) 319, 2069
KflI GGGWCCC 2 cut(s) 617, 1354
KpnI GGTACC 1 cut(s) 925
Ksp22I TGATCA 1 cut(s) 532
KspAI GTTAAC 1 cut(s) 1845
LmnI GCTCC 5 cut(s) 305, 505, 723, 1630, 2003
Lsp1109I GCAGC 3 cut(s) 229, 617, 2041
LweI GCATC 6 cut(s) 153, 428, 453, 735, 1022, 1667
MaeI CTAG 6 cut(s) 126, 429, 1493, 1634, 1920, 1943
MaeII ACGT 3 cut(s) 893, 1863, 1915
MaeIII GTNAC 4 cut(s) 889, 1136, 1370, 1831
MflI RGATCY 1 cut(s) 847
MhlI GDGCHC 1 cut(s) 78
MlsI TGGCCA 1 cut(s) 2187
MluNI TGGCCA 1 cut(s) 2187
MlyI GAGTC 8 cut(s) 239, 464, 1013, 1126, 1259, 1277, 1471, 1507
MmeI TCCRAC 2 cut(s) 177, 652
Mox20I TGGCCA 1 cut(s) 2187
MroXI GAANNNNTTC 2 cut(s) 791, 1320
MscI TGGCCA 1 cut(s) 2187
MslI CAYNNNNRTG 5 cut(s) 431, 455, 513, 743, 1233
Msp20I TGGCCA 1 cut(s) 2187
MspA1I CMGCKG 1 cut(s) 608
MspI CCGG 1 cut(s) 1141
MspR9I CCNGG 5 cut(s) 316, 622, 821, 1175, 2036
Mva1269I GAATGC 1 cut(s) 1450
MvaI CCWGG 5 cut(s) 316, 622, 821, 1175, 2036
MvnI CGCG 2 cut(s) 307, 321
MwoI GCNNNNNNNGC 4 cut(s) 248, 316, 723, 2039
NcoI CCATGG 1 cut(s) 825
NdeI CATATG 1 cut(s) 265
NlaIV GGNNCC 7 cut(s) 191, 525, 618, 619, 923, 1355, 1356
NmeAIII GCCGAG 1 cut(s) 441
NmuCI GTSAC 3 cut(s) 1136, 1370, 1831
NspI RCATGY 2 cut(s) 1814, 2075
OliI CACNNNNGTG 2 cut(s) 431, 1233
PaeI GCATGC 1 cut(s) 2075
PagI TCATGA 3 cut(s) 514, 1312, 2170
PceI AGGCCT 2 cut(s) 251, 1985
PciI ACATGT 1 cut(s) 1810
PctI GAATGC 1 cut(s) 1450
PdmI GAANNNNTTC 2 cut(s) 791, 1320
PfeI GAWTC 3 cut(s) 660, 1456, 1946
PflFI GACNNNGTC 1 cut(s) 1249
PflMI CCANNNNNTGG 1 cut(s) 826
PinAI ACCGGT 1 cut(s) 1140
PkrI GCNGC 5 cut(s) 244, 309, 414, 607, 2056
PleI GAGTC 8 cut(s) 238, 464, 1012, 1126, 1258, 1276, 1470, 1506
PpsI GAGTC 8 cut(s) 238, 464, 1012, 1126, 1258, 1276, 1470, 1506
Ppu21I YACGTR 1 cut(s) 1864
PpuMI RGGWCCY 3 cut(s) 190, 617, 1354
PscI ACATGT 1 cut(s) 1810
Psp1406I AACGTT 1 cut(s) 1915
Psp5II RGGWCCY 3 cut(s) 190, 617, 1354
Psp6I CCWGG 5 cut(s) 314, 620, 819, 1173, 2034
PspGI CCWGG 5 cut(s) 314, 620, 819, 1173, 2034
PspN4I GGNNCC 7 cut(s) 191, 525, 618, 619, 923, 1355, 1356
PspPI GGNCC 8 cut(s) 190, 199, 390, 617, 817, 1354, 1717, 2148
PspPPI RGGWCCY 3 cut(s) 190, 617, 1354
PsrI GAACNNNNNNTAC 2 cut(s) 857, 889
PstI CTGCAG 1 cut(s) 603
PsuI RGATCY 1 cut(s) 847
PsyI GACNNNGTC 1 cut(s) 1249
PvuII CAGCTG 1 cut(s) 608
RsaI GTAC 2 cut(s) 923, 1334
RsaNI GTAC 2 cut(s) 922, 1333
RseI CAYNNNNRTG 5 cut(s) 431, 455, 513, 743, 1233
SatI GCNGC 5 cut(s) 243, 308, 413, 606, 2055
Sau96I GGNCC 8 cut(s) 190, 199, 390, 617, 817, 1354, 1717, 2148
SchI GAGTC 8 cut(s) 239, 464, 1013, 1126, 1259, 1277, 1471, 1507
ScrFI CCNGG 5 cut(s) 316, 622, 821, 1175, 2036
SduI GDGCHC 1 cut(s) 78
SfaNI GCATC 6 cut(s) 153, 428, 453, 735, 1022, 1667
SfcI CTRYAG 3 cut(s) 599, 691, 907
SinI GGWCC 7 cut(s) 190, 199, 390, 617, 817, 1354, 1717
SmiMI CAYNNNNRTG 5 cut(s) 431, 455, 513, 743, 1233
SmlI CTYRAG 1 cut(s) 203
SmoI CTYRAG 1 cut(s) 203
SnaBI TACGTA 1 cut(s) 1864
SphI GCATGC 1 cut(s) 2075
SseBI AGGCCT 2 cut(s) 251, 1985
SsiI CCGC 4 cut(s) 271, 307, 388, 412
SspMI CTAG 6 cut(s) 126, 429, 1493, 1634, 1920, 1943
StuI AGGCCT 2 cut(s) 251, 1985
StyD4I CCNGG 5 cut(s) 314, 620, 819, 1173, 2034
StyI CCWWGG 4 cut(s) 246, 393, 825, 1662
TaaI ACNGT 6 cut(s) 692, 889, 926, 1104, 1330, 1957
TaiI ACGT 3 cut(s) 896, 1866, 1918
TaqI TCGA 7 cut(s) 24, 66, 84, 914, 1828, 2257, 2275
TaqII GACCGA 2 cut(s) 540, 1262
TatI WGTACW 1 cut(s) 1332
TauI GCSGC 2 cut(s) 310, 415
TfiI GAWTC 3 cut(s) 660, 1456, 1946
TscAI CASTG 5 cut(s) 603, 645, 1087, 1355, 1903
TseFI GTSAC 3 cut(s) 1136, 1370, 1831
TseI GCWGC 3 cut(s) 242, 605, 2054
Tsp45I GTSAC 3 cut(s) 1136, 1370, 1831
TspDTI ATGAA 7 cut(s) 252, 878, 1329, 1433, 1553, 1675, 2375
TspGWI ACGGA 1 cut(s) 1358
TspRI CASTG 5 cut(s) 603, 645, 1087, 1355, 1903
Tth111I GACNNNGTC 1 cut(s) 1249
Van91I CCANNNNNTGG 1 cut(s) 826
VpaK11BI GGWCC 7 cut(s) 190, 199, 390, 617, 817, 1354, 1717
XagI CCTNNNNNAGG 2 cut(s) 182, 945
XapI RAATTY 8 cut(s) 20, 373, 1210, 1262, 1706, 1991, 2191, 2220
XbaI TCTAGA 2 cut(s) 1492, 1942
XceI RCATGY 2 cut(s) 1814, 2075
XmnI GAANNNNTTC 2 cut(s) 791, 1320
XspI CTAG 6 cut(s) 126, 429, 1493, 1634, 1920, 1943
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.