Rw2G013840

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000165
Physical Location & Seq
Reverse (-)
15039370 .. 15041041
1672 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G013840.1

Sequence Viewer

Length: 654 bp
ATGATCCGGTTTACATTAGCAGATGACATGTGGAGAGTTTCTCACTTTCATGCCGAGCACAATCACGTGCTTGCTAAGCCAGAAGAGAGACCATTTTTAAGATCAAATAGAAAATTGTCTGAAGCTCATAAAGGGGTAATAAAGACCACAGGTGATGCTCGTATAGGGACCATAAAGACATGCTCATATTTAGTAGAAGAAGTTGGCAGATCTCAAACTGTTGGGTTTACAAAGAGAGATTGCTATAATTTTGTGAATAATGAGAAAATGGCTATGTTTGAGGCTAGAGATGCTCAAAGCTTAATTAATCTTTTCAAGCGTAAGCAAACTGAAGACCCTATGTTCTTTTACTCAGTGCAAGTGGATCAAGAAAATCGAATGACAAATTTCTTTTGGAGAGATAGTCGATCAAGGCTTGATTATGAGTACTTCGGAGATGTATTAGTCTTTGATAGTACATACAGAACCAACAAGTACAACATGATTTGTGCTCCTTTTGTGGATGTCAATAACCATTGGAAAAATGTATTGTTTGGATGTGCTTTTCTATTGGATGAGACAACTGCTTCATTCAATTGGTTGTTTGAAACATTTTTAGAGTCAATGGAAATCAACCACCAAAGACCATTTATACTGATCAATGTCAAGCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE PEARLI-4 SWIM

Protein Analysis

217

Amino Acids

25.79

Weight (kDa)

7.05

Isoelectric Point (pI)

39.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ZSWIM1-3_RNaseH-like PF21056 111 - 202 2.3e-07 Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain
MULE PF10551 147 - 212 2.4e-13 MULE transposase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000165)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38180
fragaria_vesca FvH4_1g09751 FvH4_1g09751 FvH4_1g09751 FvH4_1g12531 FvH4_1g19193 FvH4_2g07051 FvH4_2g17131 FvH4_2g17131 FvH4_2g28082 FvH4_5g08845 FvH4_5g26361 FvH4_5g26361 FvH4_5g26361 FvH4_5g26361 FvH4_5g39269 FvH4_6g36651 FvH4_6g38410 FvH4_7g04941 FvH4_7g04941
malus_domestica MD00G1156400.v1.1 MD02G1139600.v1.1 MD05G1144600.v1.1 MD06G1002400.v1.1 MD10G1143900.v1.1 MD15G1227300.v1.1 MD15G1252700.v1.1
prunus_persica Prupe.2G147900_v2.0.a1 Prupe.3G257900_v2.0.a1 Prupe.5G003600_v2.0.a1 Prupe.5G053800_v2.0.a1 Prupe.6G011300_v2.0.a1 Prupe.7G161400_v2.0.a1 Prupe.7G161500_v2.0.a1 Prupe.7G188000_v2.0.a1 Prupe.8G182700_v2.0.a1 Prupe.8G182700_v2.0.a1 Prupe.8G182700_v2.0.a1
pyrus_communis pycom02g11030 pycom05g13970 pycom06g00250 pycom10g12390 pycom10g12400 pycom15g20220 pycom15g22260 pycom17g05620
rosa_chinensis RchiOBHm_Chr2g0096701 RchiOBHm_Chr2g0100471 RchiOBHm_Chr2g0100481 RchiOBHm_Chr6g0281561 RchiOBHm_Chr7g0187081 RchiOBHm_Chr7g0217201 RchiOBHm_Chr7g0228321
rosa_laevigata RLG00000001574 RLG00000002527 RLG00000008169 RLG00000011104 RLG00000012963 RLG00000013720 RLG00000014615 RLG00000016663 RLG00000018214 RLG00000018621 RLG00000018622 RLG00000022494
rosa_multiflora Rmu_co8187762.1_g000001 Rmu_co8276569.1_g000001 Rmu_sc0000528.1_g000025 Rmu_sc0001095.1_g000001 Rmu_sc0001095.1_g000002 Rmu_sc0001167.1_g000007 Rmu_sc0001758.1_g000042 Rmu_sc0002147.1_g000004 Rmu_sc0002489.1_g000048 Rmu_sc0002564.1_g000015 Rmu_sc0002902.1_g000037 Rmu_sc0003565.1_g000022 Rmu_sc0003576.1_g000008 Rmu_sc0003720.1_g000022 Rmu_sc0003720.1_g000023 Rmu_sc0003862.1_g000023 Rmu_sc0006475.1_g000009 Rmu_sc0006475.1_g000010 Rmu_sc0006735.1_g000001 Rmu_sc0007586.1_g000004 Rmu_sc0009650.1_g000010 Rmu_sc0010963.1_g000005 Rmu_sc0012557.1_g000002 Rmu_sc0020744.1_g000001 Rmu_sc0020745.1_g000002 Rmu_sc0022201.1_g000001 Rmu_sc0022408.1_g000011 Rmu_sc0023414.1_g000001 Rmu_sc0025101.1_g000001 Rmu_ssc0000211.1_g000015 Rmu_ssc0000240.1_g000012
rosa_roxburghii Rroxscaffold_1G00013940 Rroxscaffold_1G00018420 Rroxscaffold_2G00142210 Rroxscaffold_2G00142230 Rroxscaffold_2G00145400 Rroxscaffold_3G00240120 Rroxscaffold_3G00240150 Rroxscaffold_3G00242500 Rroxscaffold_5G00346610 Rroxscaffold_5G00356000 Rroxscaffold_7G00187000 Rroxscaffold_7G00212120
rosa_rugosa Rorug01G0260900 Rorug01G0446900 Rorug02G0059800 Rorug02G0059900 Rorug02G0088400 Rorug02G0088500 Rorug02G0522300 Rorug03G0234100 Rorug03G0234100 Rorug03G0242400 Rorug04G0109900 Rorug04G0326100 Rorug05G0275900 Rorug06G0141600 Rorug06G0141700 Rorug06G0141700 Rorug07G0167200 Rorug07G0247000 Rorug07G0247000 Rorug07G0247100.1
rosa_samantha Rh1AG046800 Rh1AG111600 Rh1AG242600 Rh1CG226400 Rh1DG086400 Rh2AG107200 Rh2AG138100 Rh2AG528600 Rh2BG109600 Rh2BG141200 Rh2BG273400 Rh2BG357800 Rh2BG640200 Rh2CG111400 Rh2CG143400 Rh2CG161100 Rh2CG251300 Rh2DG111000 Rh2DG142900 Rh2DG651100 Rh3BG318000 Rh4AG167800 Rh4AG253700 Rh5AG282900 Rh6AG254100 Rh6BG257100 Rh6CG256400 Rh6DG248200 Rh7AG306100 Rh7BG297500 Rh7CG325200 Rh7CG420200 Rh7DG306000
rosa_wichuraiana Rw2G008310 Rw2G010790 Rw2G010800 Rw2G013840 Rw2G022430 Rw3G020550 Rw3G024980 Rw3G025930 Rw5G026810 Rw5G035870 Rw6G022060 Rw6G030700 Rw7G007420 Rw7G026010 Rw7G033340 Rw7G037700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 372
AcsI RAATTY 1 cut(s) 385
AcuI CTGAAG 2 cut(s) 141, 351
AcvI CACGTG 1 cut(s) 67
AfaI GTAC 3 cut(s) 428, 457, 476
AflIII ACRYGT 1 cut(s) 27
AgsI TTSAA 3 cut(s) 316, 574, 587
AluBI AGCT 2 cut(s) 125, 300
AluI AGCT 2 cut(s) 125, 300
Alw21I GWGCWC 2 cut(s) 60, 493
Alw26I GTCTC 2 cut(s) 82, 551
AlwI GGATC 1 cut(s) 372
ApoI RAATTY 1 cut(s) 385
AseI ATTAAT 1 cut(s) 306
AspS9I GGNCC 1 cut(s) 168
AsuHPI GGTGA 1 cut(s) 164
AvaII GGWCC 1 cut(s) 168
BbrPI CACGTG 1 cut(s) 67
BbsI GAAGAC 1 cut(s) 339
Bbv12I GWGCWC 2 cut(s) 60, 493
BclI TGATCA 1 cut(s) 636
BcoDI GTCTC 2 cut(s) 82, 551
BfaI CTAG 1 cut(s) 285
BglII AGATCT 1 cut(s) 209
BlpI GCTNAGC 1 cut(s) 75
BmcAI AGTACT 1 cut(s) 428
Bme18I GGWCC 1 cut(s) 168
BmgT120I GGNCC 1 cut(s) 168
BmiI GGNNCC 1 cut(s) 169
BmsI GCATC 2 cut(s) 145, 280
BpiI GAAGAC 1 cut(s) 339
BplI GAGNNNNNCTC 2 cut(s) 25, 57
Bpu1102I GCTNAGC 1 cut(s) 75
BsaAI YACGTR 1 cut(s) 67
BsaI GGTCTC 1 cut(s) 82
BsaWI WCCGGW 1 cut(s) 6
BsaXI ACNNNNNCTCC 2 cut(s) 388, 418
BseGI GGATG 3 cut(s) 508, 542, 559
BseMII CTCAG 1 cut(s) 366
BsiHKAI GWGCWC 2 cut(s) 60, 493
BsiSI CCGG 1 cut(s) 7
BslFI GGGAC 1 cut(s) 181
BsmAI GTCTC 2 cut(s) 82, 551
BsmFI GGGAC 1 cut(s) 181
Bso31I GGTCTC 1 cut(s) 82
Bsp1286I GDGCHC 2 cut(s) 60, 493
Bsp143I GATC 6 cut(s) 3, 101, 209, 364, 407, 636
Bsp1720I GCTNAGC 1 cut(s) 75
BspCNI CTCAG 1 cut(s) 365
BspLI GGNNCC 1 cut(s) 169
BspPI GGATC 1 cut(s) 372
BspTNI GGTCTC 1 cut(s) 82
BssMI GATC 6 cut(s) 3, 101, 209, 364, 407, 636
Bst4CI ACNGT 1 cut(s) 220
Bst6I CTCTTC 1 cut(s) 78
BstBAI YACGTR 1 cut(s) 67
BstC8I GCNNGC 1 cut(s) 72
BstDEI CTNAG 2 cut(s) 75, 352
BstF5I GGATG 3 cut(s) 508, 542, 559
BstKTI GATC 6 cut(s) 6, 104, 212, 367, 410, 639
BstMAI GTCTC 2 cut(s) 82, 551
BstMBI GATC 6 cut(s) 3, 101, 209, 364, 407, 636
BstMWI GCNNNNNNNGC 2 cut(s) 76, 290
BstNSI RCATGY 2 cut(s) 31, 183
BstV2I GAAGAC 1 cut(s) 339
BstX2I RGATCY 1 cut(s) 209
BstYI RGATCY 1 cut(s) 209
BtsCI GGATG 3 cut(s) 508, 542, 559
BtsIMutI CAGTG 1 cut(s) 360
Cac8I GCNNGC 1 cut(s) 72
Cfr13I GGNCC 1 cut(s) 168
Csp6I GTAC 3 cut(s) 427, 456, 475
CviAII CATG 4 cut(s) 28, 50, 180, 481
CviJI RGCY 6 cut(s) 79, 125, 272, 284, 300, 415
CviKI_1 RGCY 6 cut(s) 79, 125, 272, 284, 300, 415
CviQI GTAC 3 cut(s) 427, 456, 475
DdeI CTNAG 2 cut(s) 75, 352
DpnI GATC 6 cut(s) 5, 103, 211, 366, 409, 638
DpnII GATC 6 cut(s) 3, 101, 209, 364, 407, 636
Eam1104I CTCTTC 1 cut(s) 78
EarI CTCTTC 1 cut(s) 78
Eco31I GGTCTC 1 cut(s) 82
Eco47I GGWCC 1 cut(s) 168
Eco57I CTGAAG 2 cut(s) 141, 351
Eco72I CACGTG 1 cut(s) 67
FaeI CATG 4 cut(s) 31, 53, 183, 484
FaqI GGGAC 1 cut(s) 181
FatI CATG 4 cut(s) 27, 49, 179, 480
FbaI TGATCA 1 cut(s) 636
FokI GGATG 3 cut(s) 515, 549, 566
FspBI CTAG 1 cut(s) 285
HapII CCGG 1 cut(s) 7
Hin1II CATG 4 cut(s) 31, 53, 183, 484
HindIII AAGCTT 1 cut(s) 298
HinfI GANTC 1 cut(s) 599
HpaII CCGG 1 cut(s) 7
HphI GGTGA 1 cut(s) 164
Hpy166II GTNNAC 2 cut(s) 12, 228
Hpy188I TCNGA 2 cut(s) 121, 434
Hpy188III TCNNGA 1 cut(s) 368
Hpy8I GTNNAC 2 cut(s) 12, 228
HpyCH4III ACNGT 1 cut(s) 220
HpyCH4IV ACGT 1 cut(s) 66
HpyCH4V TGCA 1 cut(s) 358
HpyF10VI GCNNNNNNNGC 2 cut(s) 76, 290
HpyF3I CTNAG 2 cut(s) 75, 352
HpySE526I ACGT 1 cut(s) 66
Hsp92II CATG 4 cut(s) 31, 53, 183, 484
Ksp22I TGATCA 1 cut(s) 636
Kzo9I GATC 6 cut(s) 3, 101, 209, 364, 407, 636
LmnI GCTCC 1 cut(s) 496
LpnPI CCDG 3 cut(s) 20, 93, 135
LweI GCATC 2 cut(s) 145, 280
MaeI CTAG 1 cut(s) 285
MaeII ACGT 1 cut(s) 66
MalI GATC 6 cut(s) 5, 103, 211, 366, 409, 638
MboI GATC 6 cut(s) 3, 101, 209, 364, 407, 636
MboII GAAGA 3 cut(s) 95, 209, 344
MfeI CAATTG 1 cut(s) 574
MflI RGATCY 1 cut(s) 209
MhlI GDGCHC 2 cut(s) 60, 493
MluCI AATT 5 cut(s) 113, 247, 303, 385, 574
MlyI GAGTC 1 cut(s) 608
MnlI CCTC 1 cut(s) 274
MseI TTAA 3 cut(s) 98, 302, 306
MslI CAYNNNNRTG 1 cut(s) 48
MspI CCGG 1 cut(s) 7
MunI CAATTG 1 cut(s) 574
MwoI GCNNNNNNNGC 2 cut(s) 76, 290
NdeII GATC 6 cut(s) 3, 101, 209, 364, 407, 636
NlaIII CATG 4 cut(s) 31, 53, 183, 484
NlaIV GGNNCC 1 cut(s) 169
NmeAIII GCCGAG 1 cut(s) 79
NspI RCATGY 2 cut(s) 31, 183
PacI TTAATTAA 1 cut(s) 306
PciI ACATGT 1 cut(s) 27
PleI GAGTC 1 cut(s) 607
PmaCI CACGTG 1 cut(s) 67
PmlI CACGTG 1 cut(s) 67
PpsI GAGTC 1 cut(s) 607
Ppu21I YACGTR 1 cut(s) 67
PscI ACATGT 1 cut(s) 27
PshBI ATTAAT 1 cut(s) 306
PspCI CACGTG 1 cut(s) 67
PspN4I GGNNCC 1 cut(s) 169
PspPI GGNCC 1 cut(s) 168
PsuI RGATCY 1 cut(s) 209
RsaI GTAC 3 cut(s) 428, 457, 476
RsaNI GTAC 3 cut(s) 427, 456, 475
RseI CAYNNNNRTG 1 cut(s) 48
SaqAI TTAA 3 cut(s) 98, 302, 306
Sau3AI GATC 6 cut(s) 3, 101, 209, 364, 407, 636
Sau96I GGNCC 1 cut(s) 168
ScaI AGTACT 1 cut(s) 428
SchI GAGTC 1 cut(s) 608
SduI GDGCHC 2 cut(s) 60, 493
SetI ASST 4 cut(s) 69, 127, 154, 302
SfaNI GCATC 2 cut(s) 145, 280
SinI GGWCC 1 cut(s) 168
SmiMI CAYNNNNRTG 1 cut(s) 48
Sse9I AATT 5 cut(s) 113, 247, 303, 385, 574
SspMI CTAG 1 cut(s) 285
TaaI ACNGT 1 cut(s) 220
TaiI ACGT 1 cut(s) 69
TaqI TCGA 2 cut(s) 376, 406
TasI AATT 5 cut(s) 113, 247, 303, 385, 574
TatI WGTACW 3 cut(s) 426, 455, 474
Tru1I TTAA 3 cut(s) 98, 302, 306
Tru9I TTAA 3 cut(s) 98, 302, 306
TscAI CASTG 1 cut(s) 360
TspDTI ATGAA 2 cut(s) 38, 558
TspRI CASTG 1 cut(s) 360
VpaK11BI GGWCC 1 cut(s) 168
VspI ATTAAT 1 cut(s) 306
XapI RAATTY 1 cut(s) 385
XceI RCATGY 2 cut(s) 31, 183
XspI CTAG 1 cut(s) 285
ZrmI AGTACT 1 cut(s) 428
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.