Rmu_sc0010963.1_g000005

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010963.1
OG0000165
Physical Location & Seq
Reverse (-)
11874 .. 13741
1868 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010963.1_g000005.1.cds

Sequence Viewer

Length: 696 bp
atgtcaccactccgctgccacgcatcaccactccacgccgccgcaatactccaccgcgccacctggccacgctgcagacagatccaactacctgcaaactacaacaaccagaaccgaaatcgctaccaaacctggcctcccttcaatcacgtccgccgcatcacagatcgccggaatggtggcgttagatcccaccaccggaaagggccatctagtagctactccacaaccaccatcgtctccgatctgagagggacagaacgagatctgtctgtccagcccaaggtcgaagatccagccatctttcccagaccacgcctcagtttagacaccccaccgctactcaccatcagcatcccctctcgggccggaatgcgacggcagaggcgccggcaggaagatgatcaagaacacagcaagacaactgatttgggtaaagattcaatgattgtgaatcgtcaagctagtaataatgacgacttgtatggactaattgtgcatagtgaggaagaagcatacaacttctattgtgattatggtgctagaatggggtttagtgttcggataatgcagaggaggaaaaccaacaatgttgtgagacaagttaattatgtctgttcaaaagaaggttttaaactagatagtgatcctttagaagtgaaaaaggttgataggctggacacaagaactggctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE PEARLI-4 SWIM

Protein Analysis

231

Amino Acids

26.71

Weight (kDa)

10.05

Isoelectric Point (pI)

50.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000165)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38180
fragaria_vesca FvH4_1g09751 FvH4_1g09751 FvH4_1g09751 FvH4_1g12531 FvH4_1g19193 FvH4_2g07051 FvH4_2g17131 FvH4_2g17131 FvH4_2g28082 FvH4_5g08845 FvH4_5g26361 FvH4_5g26361 FvH4_5g26361 FvH4_5g26361 FvH4_5g39269 FvH4_6g36651 FvH4_6g38410 FvH4_7g04941 FvH4_7g04941
malus_domestica MD00G1156400.v1.1 MD02G1139600.v1.1 MD05G1144600.v1.1 MD06G1002400.v1.1 MD10G1143900.v1.1 MD15G1227300.v1.1 MD15G1252700.v1.1
prunus_persica Prupe.2G147900_v2.0.a1 Prupe.3G257900_v2.0.a1 Prupe.5G003600_v2.0.a1 Prupe.5G053800_v2.0.a1 Prupe.6G011300_v2.0.a1 Prupe.7G161400_v2.0.a1 Prupe.7G161500_v2.0.a1 Prupe.7G188000_v2.0.a1 Prupe.8G182700_v2.0.a1 Prupe.8G182700_v2.0.a1 Prupe.8G182700_v2.0.a1
pyrus_communis pycom02g11030 pycom05g13970 pycom06g00250 pycom10g12390 pycom10g12400 pycom15g20220 pycom15g22260 pycom17g05620
rosa_chinensis RchiOBHm_Chr2g0096701 RchiOBHm_Chr2g0100471 RchiOBHm_Chr2g0100481 RchiOBHm_Chr6g0281561 RchiOBHm_Chr7g0187081 RchiOBHm_Chr7g0217201 RchiOBHm_Chr7g0228321
rosa_laevigata RLG00000001574 RLG00000002527 RLG00000008169 RLG00000011104 RLG00000012963 RLG00000013720 RLG00000014615 RLG00000016663 RLG00000018214 RLG00000018621 RLG00000018622 RLG00000022494
rosa_multiflora Rmu_co8187762.1_g000001 Rmu_co8276569.1_g000001 Rmu_sc0000528.1_g000025 Rmu_sc0001095.1_g000001 Rmu_sc0001095.1_g000002 Rmu_sc0001167.1_g000007 Rmu_sc0001758.1_g000042 Rmu_sc0002147.1_g000004 Rmu_sc0002489.1_g000048 Rmu_sc0002564.1_g000015 Rmu_sc0002902.1_g000037 Rmu_sc0003565.1_g000022 Rmu_sc0003576.1_g000008 Rmu_sc0003720.1_g000022 Rmu_sc0003720.1_g000023 Rmu_sc0003862.1_g000023 Rmu_sc0006475.1_g000009 Rmu_sc0006475.1_g000010 Rmu_sc0006735.1_g000001 Rmu_sc0007586.1_g000004 Rmu_sc0009650.1_g000010 Rmu_sc0010963.1_g000005 Rmu_sc0012557.1_g000002 Rmu_sc0020744.1_g000001 Rmu_sc0020745.1_g000002 Rmu_sc0022201.1_g000001 Rmu_sc0022408.1_g000011 Rmu_sc0023414.1_g000001 Rmu_sc0025101.1_g000001 Rmu_ssc0000211.1_g000015 Rmu_ssc0000240.1_g000012
rosa_roxburghii Rroxscaffold_1G00013940 Rroxscaffold_1G00018420 Rroxscaffold_2G00142210 Rroxscaffold_2G00142230 Rroxscaffold_2G00145400 Rroxscaffold_3G00240120 Rroxscaffold_3G00240150 Rroxscaffold_3G00242500 Rroxscaffold_5G00346610 Rroxscaffold_5G00356000 Rroxscaffold_7G00187000 Rroxscaffold_7G00212120
rosa_rugosa Rorug01G0260900 Rorug01G0446900 Rorug02G0059800 Rorug02G0059900 Rorug02G0088400 Rorug02G0088500 Rorug02G0522300 Rorug03G0234100 Rorug03G0234100 Rorug03G0242400 Rorug04G0109900 Rorug04G0326100 Rorug05G0275900 Rorug06G0141600 Rorug06G0141700 Rorug06G0141700 Rorug07G0167200 Rorug07G0247000 Rorug07G0247000 Rorug07G0247100.1
rosa_samantha Rh1AG046800 Rh1AG111600 Rh1AG242600 Rh1CG226400 Rh1DG086400 Rh2AG107200 Rh2AG138100 Rh2AG528600 Rh2BG109600 Rh2BG141200 Rh2BG273400 Rh2BG357800 Rh2BG640200 Rh2CG111400 Rh2CG143400 Rh2CG161100 Rh2CG251300 Rh2DG111000 Rh2DG142900 Rh2DG651100 Rh3BG318000 Rh4AG167800 Rh4AG253700 Rh5AG282900 Rh6AG254100 Rh6BG257100 Rh6CG256400 Rh6DG248200 Rh7AG306100 Rh7BG297500 Rh7CG325200 Rh7CG420200 Rh7DG306000
rosa_wichuraiana Rw2G008310 Rw2G010790 Rw2G010800 Rw2G013840 Rw2G022430 Rw3G020550 Rw3G024980 Rw3G025930 Rw5G026810 Rw5G035870 Rw6G022060 Rw6G030700 Rw7G007420 Rw7G026010 Rw7G033340 Rw7G037700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 100
AccB1I GGYRCC 1 cut(s) 387
AccII CGCG 1 cut(s) 57
AciI CCGC 7 cut(s) 13, 39, 42, 55, 154, 157, 338
AclWI GGATC 4 cut(s) 76, 183, 287, 641
AcoI YGGCCR 1 cut(s) 65
AcyI GRCGYC 1 cut(s) 388
AfiI CCNNNNNNNGG 3 cut(s) 198, 283, 364
AgsI TTSAA 3 cut(s) 145, 444, 621
AjiI CACGTC 1 cut(s) 151
AjnI CCWGG 2 cut(s) 62, 131
AluBI AGCT 2 cut(s) 219, 464
AluI AGCT 2 cut(s) 219, 464
Alw26I GTCTC 2 cut(s) 244, 592
AlwI GGATC 4 cut(s) 76, 183, 287, 641
Ama87I CYCGRG 1 cut(s) 363
AoxI GGCC 4 cut(s) 65, 134, 206, 366
ApeKI GCWGC 2 cut(s) 15, 72
ArsI GACNNNNNNTTYG 2 cut(s) 412, 444
AspLEI GCGC 2 cut(s) 59, 390
AspS9I GGNCC 2 cut(s) 206, 366
AsuHPI GGTGA 2 cut(s) 18, 337
AvaI CYCGRG 1 cut(s) 363
BalI TGGCCA 1 cut(s) 67
BanI GGYRCC 1 cut(s) 387
BbvI GCAGC 2 cut(s) 2, 59
BccI CCATC 4 cut(s) 217, 242, 308, 356
BceAI ACGGC 1 cut(s) 395
BciT130I CCWGG 2 cut(s) 64, 133
BclI TGATCA 1 cut(s) 403
BcoDI GTCTC 2 cut(s) 244, 592
BfaI CTAG 4 cut(s) 213, 465, 543, 638
BfmI CTRYAG 1 cut(s) 73
BfoI RGCGCY 1 cut(s) 391
BfuAI ACCTGC 1 cut(s) 100
BglII AGATCT 1 cut(s) 265
BisI GCNGC 5 cut(s) 16, 39, 42, 73, 157
BlsI GCNGC 5 cut(s) 17, 40, 43, 74, 158
Bme1390I CCNGG 2 cut(s) 64, 133
BmeT110I CYCGRG 1 cut(s) 363
BmgBI CACGTC 1 cut(s) 151
BmgT120I GGNCC 2 cut(s) 206, 366
BmiI GGNNCC 1 cut(s) 389
BmrFI CCNGG 2 cut(s) 64, 133
BmsI GCATC 3 cut(s) 32, 168, 363
BsaBI GATNNNNATC 1 cut(s) 645
BsaHI GRCGYC 1 cut(s) 388
BsaJI CCNNGG 1 cut(s) 282
BsaWI WCCGGW 1 cut(s) 198
BsaXI ACNNNNNCTCC 2 cut(s) 121, 151
Bsc4I CCNNNNNNNGG 3 cut(s) 198, 283, 364
Bse118I RCCGGY 1 cut(s) 390
Bse1I ACTGG 1 cut(s) 694
Bse8I GATNNNNATC 1 cut(s) 645
BseBI CCWGG 2 cut(s) 64, 133
BseDI CCNNGG 1 cut(s) 282
BseGI GGATG 1 cut(s) 354
BseJI GATNNNNATC 1 cut(s) 645
BseLI CCNNNNNNNGG 3 cut(s) 198, 283, 364
BseMII CTCAG 2 cut(s) 239, 334
BseNI ACTGG 1 cut(s) 694
BseRI GAGGAG 1 cut(s) 589
BseXI GCAGC 2 cut(s) 2, 59
Bsh1236I CGCG 1 cut(s) 57
BshFI GGCC 4 cut(s) 67, 136, 208, 368
BshNI GGYRCC 1 cut(s) 387
BsiHKCI CYCGRG 1 cut(s) 363
BsiSI CCGG 4 cut(s) 172, 199, 369, 391
BslFI GGGAC 1 cut(s) 268
BslI CCNNNNNNNGG 3 cut(s) 198, 283, 364
BsmAI GTCTC 2 cut(s) 244, 592
BsmBI CGTCTC 1 cut(s) 244
BsmFI GGGAC 1 cut(s) 268
BsmI GAATGC 1 cut(s) 378
BsnI GGCC 4 cut(s) 67, 136, 208, 368
BsoBI CYCGRG 1 cut(s) 363
Bsp143I GATC 8 cut(s) 81, 166, 188, 244, 265, 292, 403, 646
BspACI CCGC 7 cut(s) 13, 39, 42, 55, 154, 157, 338
BspANI GGCC 4 cut(s) 67, 136, 208, 368
BspCNI CTCAG 2 cut(s) 240, 333
BspFNI CGCG 1 cut(s) 57
BspLI GGNNCC 1 cut(s) 389
BspMAI CTGCAG 1 cut(s) 77
BspMI ACCTGC 1 cut(s) 100
BspPI GGATC 4 cut(s) 76, 183, 287, 641
BspT107I GGYRCC 1 cut(s) 387
BsrFI RCCGGY 1 cut(s) 390
BsrI ACTGG 1 cut(s) 694
BssAI RCCGGY 1 cut(s) 390
BssECI CCNNGG 1 cut(s) 282
BssMI GATC 8 cut(s) 81, 166, 188, 244, 265, 292, 403, 646
BssNI GRCGYC 1 cut(s) 388
BssT1I CCWWGG 1 cut(s) 282
Bst2UI CCWGG 2 cut(s) 64, 133
BstACI GRCGYC 1 cut(s) 388
BstC8I GCNNGC 1 cut(s) 392
BstDEI CTNAG 2 cut(s) 248, 320
BstF5I GGATG 1 cut(s) 354
BstFNI CGCG 1 cut(s) 57
BstH2I RGCGCY 1 cut(s) 391
BstHHI GCGC 2 cut(s) 59, 390
BstKTI GATC 8 cut(s) 84, 169, 191, 247, 268, 295, 406, 649
BstMAI GTCTC 2 cut(s) 244, 592
BstMBI GATC 8 cut(s) 81, 166, 188, 244, 265, 292, 403, 646
BstNI CCWGG 2 cut(s) 64, 133
BstSCI CCNGG 2 cut(s) 62, 131
BstSFI CTRYAG 1 cut(s) 73
BstUI CGCG 1 cut(s) 57
BstV1I GCAGC 2 cut(s) 2, 59
BstX2I RGATCY 4 cut(s) 81, 188, 265, 292
BstYI RGATCY 4 cut(s) 81, 188, 265, 292
BsuRI GGCC 4 cut(s) 67, 136, 208, 368
BtrI CACGTC 1 cut(s) 151
BtsCI GGATG 1 cut(s) 354
BveI ACCTGC 1 cut(s) 100
Cac8I GCNNGC 1 cut(s) 392
CfoI GCGC 2 cut(s) 59, 390
Cfr10I RCCGGY 1 cut(s) 390
Cfr13I GGNCC 2 cut(s) 206, 366
DdeI CTNAG 2 cut(s) 248, 320
DinI GGCGCC 1 cut(s) 389
DpnI GATC 8 cut(s) 83, 168, 190, 246, 267, 294, 405, 648
DpnII GATC 8 cut(s) 81, 166, 188, 244, 265, 292, 403, 646
DraI TTTAAA 1 cut(s) 634
EaeI YGGCCR 1 cut(s) 65
EciI GGCGGA 1 cut(s) 143
Eco130I CCWWGG 1 cut(s) 282
Eco88I CYCGRG 1 cut(s) 363
EcoRII CCWGG 2 cut(s) 62, 131
EcoT14I CCWWGG 1 cut(s) 282
EgeI GGCGCC 1 cut(s) 389
EheI GGCGCC 1 cut(s) 389
ErhI CCWWGG 1 cut(s) 282
Esp3I CGTCTC 1 cut(s) 244
FaiI YATR 5 cut(s) 486, 501, 517, 537, 612
FaqI GGGAC 1 cut(s) 268
FbaI TGATCA 1 cut(s) 403
Fnu4HI GCNGC 5 cut(s) 16, 39, 42, 73, 157
FokI GGATG 1 cut(s) 341
Fsp4HI GCNGC 5 cut(s) 16, 39, 42, 73, 157
FspBI CTAG 4 cut(s) 213, 465, 543, 638
GlaI GCGC 2 cut(s) 58, 389
GluI GCNGC 5 cut(s) 16, 39, 42, 73, 157
HaeII RGCGCY 1 cut(s) 391
HaeIII GGCC 4 cut(s) 67, 136, 208, 368
HapII CCGG 4 cut(s) 172, 199, 369, 391
HhaI GCGC 2 cut(s) 59, 390
Hin1I GRCGYC 1 cut(s) 388
Hin6I GCGC 2 cut(s) 57, 388
HinP1I GCGC 2 cut(s) 57, 388
HinfI GANTC 2 cut(s) 440, 454
HpaII CCGG 4 cut(s) 172, 199, 369, 391
HphI GGTGA 2 cut(s) 18, 337
Hpy188I TCNGA 3 cut(s) 244, 249, 564
Hpy188III TCNNGA 1 cut(s) 407
Hpy99I CGWCG 1 cut(s) 381
HpyAV CCTTC 2 cut(s) 151, 620
HpyCH4IV ACGT 1 cut(s) 150
HpyCH4V TGCA 4 cut(s) 75, 95, 499, 571
HpyF3I CTNAG 2 cut(s) 248, 320
HpySE526I ACGT 1 cut(s) 150
Hsp92I GRCGYC 1 cut(s) 388
HspAI GCGC 2 cut(s) 57, 388
KasI GGCGCC 1 cut(s) 387
KroI GCCGGC 1 cut(s) 390
KroNI GCCGGC 1 cut(s) 392
Ksp22I TGATCA 1 cut(s) 403
Kzo9I GATC 8 cut(s) 81, 166, 188, 244, 265, 292, 403, 646
Lsp1109I GCAGC 2 cut(s) 2, 59
LweI GCATC 3 cut(s) 32, 168, 363
MaeI CTAG 4 cut(s) 213, 465, 543, 638
MaeII ACGT 1 cut(s) 150
MaeIII GTNAC 1 cut(s) 3
MalI GATC 8 cut(s) 83, 168, 190, 246, 267, 294, 405, 648
MboI GATC 8 cut(s) 81, 166, 188, 244, 265, 292, 403, 646
MboII GAAGA 3 cut(s) 302, 410, 521
MflI RGATCY 4 cut(s) 81, 188, 265, 292
MlsI TGGCCA 1 cut(s) 67
MluCI AATT 2 cut(s) 492, 607
MluNI TGGCCA 1 cut(s) 67
Mly113I GGCGCC 1 cut(s) 388
MmeI TCCRAC 1 cut(s) 109
MnlI CCTC 8 cut(s) 147, 245, 329, 370, 378, 499, 567, 570
Mox20I TGGCCA 1 cut(s) 67
MroNI GCCGGC 1 cut(s) 390
MscI TGGCCA 1 cut(s) 67
MseI TTAA 2 cut(s) 606, 633
Msp20I TGGCCA 1 cut(s) 67
MspA1I CMGCKG 1 cut(s) 15
MspI CCGG 4 cut(s) 172, 199, 369, 391
MspR9I CCNGG 2 cut(s) 64, 133
Mva1269I GAATGC 1 cut(s) 378
MvaI CCWGG 2 cut(s) 64, 133
MvnI CGCG 1 cut(s) 57
NaeI GCCGGC 1 cut(s) 392
NarI GGCGCC 1 cut(s) 388
NdeII GATC 8 cut(s) 81, 166, 188, 244, 265, 292, 403, 646
NgoMIV GCCGGC 1 cut(s) 390
NlaIV GGNNCC 1 cut(s) 389
NmuCI GTSAC 1 cut(s) 3
PctI GAATGC 1 cut(s) 378
PdiI GCCGGC 1 cut(s) 392
PfeI GAWTC 2 cut(s) 440, 454
PkrI GCNGC 5 cut(s) 17, 40, 43, 74, 158
PluTI GGCGCC 1 cut(s) 391
Psp6I CCWGG 2 cut(s) 62, 131
PspGI CCWGG 2 cut(s) 62, 131
PspN4I GGNNCC 1 cut(s) 389
PspPI GGNCC 2 cut(s) 206, 366
PstI CTGCAG 1 cut(s) 77
PsuI RGATCY 4 cut(s) 81, 188, 265, 292
SaqAI TTAA 2 cut(s) 606, 633
SatI GCNGC 5 cut(s) 16, 39, 42, 73, 157
Sau3AI GATC 8 cut(s) 81, 166, 188, 244, 265, 292, 403, 646
Sau96I GGNCC 2 cut(s) 206, 366
ScrFI CCNGG 2 cut(s) 64, 133
SetI ASST 9 cut(s) 65, 94, 134, 153, 221, 288, 466, 631, 669
SfaNI GCATC 3 cut(s) 32, 168, 363
SfcI CTRYAG 1 cut(s) 73
SfoI GGCGCC 1 cut(s) 389
Sse9I AATT 2 cut(s) 492, 607
SsiI CCGC 7 cut(s) 13, 39, 42, 55, 154, 157, 338
SspDI GGCGCC 1 cut(s) 387
SspMI CTAG 4 cut(s) 213, 465, 543, 638
StyD4I CCNGG 2 cut(s) 62, 131
StyI CCWWGG 1 cut(s) 282
TaiI ACGT 1 cut(s) 153
TaqI TCGA 1 cut(s) 288
TasI AATT 2 cut(s) 492, 607
TauI GCSGC 3 cut(s) 41, 44, 159
TfiI GAWTC 2 cut(s) 440, 454
Tru1I TTAA 2 cut(s) 606, 633
Tru9I TTAA 2 cut(s) 606, 633
TseFI GTSAC 1 cut(s) 3
TseI GCWGC 2 cut(s) 15, 72
Tsp45I GTSAC 1 cut(s) 3
XspI CTAG 4 cut(s) 213, 465, 543, 638
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.