RLG00000022494

cyclic nucleotide-gated ion channel

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000165
Physical Location & Seq
Reverse (-)
1910655 .. 1915035
4381 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022494

Sequence Viewer

Length: 792 bp
ATGGAGGAGATTGTTGAAGAGGATGAAGAACTAAAGCCGGGAACTAAGATTGTGAAGGAGCTGTTAGTAGAGGCAATGAAGCGTCTTGAGAAAGACAAGGAAACTCAGGACATGTTGGAAAATTTAAACAAAGTTGGTAACCAGTGCAACTGTGACATTCCAGTTAATGAAGGTCATGTTTTACCTCCACCATGTTCCAAGACTAAAGGAATGACAAATGAAAGAATCAAAGACACAAGGGAGAAAAAACAACGGAAGAATAAGAAAACAAAAGATGCAAGCCAAGACAATCAAGAAAACGTGATTGATTCTTCTTATAATCCAAGAGCTCCACTTCATGTGCCAGCATTTAATCCTCACTTTGGTGTACCTCACTCCCCATTTCATAATCTGGGTAATTTAAGTTGGACTTTTGGGAATCCCAATTTCTGTTTCAATTATGGTGTTATGCCTTCCTCAAATCAGGTTTCGGGTTTCCTCAAATACATCAGAGATGCACGATTGATCAGCGGAAACACACAAAGTAAAGAGAAACGTTGTGATTGGAGCCTTGAGAGCCATGCCACAGCGCACAATCCATTTTGGCATCCAAACCCACTTATTCCCCTTGTCCGACGCAGCCTGAATCCGCCTTCGCCGAAATCCGGTTCGAAGAGGTCCCGTTCCGATGGCGAGTTGATTAATGACCCAAAGAAGAAGGCTAAGAAATTGGGGGATGATCAAGAGAACGATGGTATAGAAGAGGAATCGGAGAAAGCCAAACCGCTGATCGAAAAGGCTTTGAAGTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans

Protein Analysis

264

Amino Acids

29.81

Weight (kDa)

8.46

Isoelectric Point (pI)

49.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000165)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38180
fragaria_vesca FvH4_1g09751 FvH4_1g09751 FvH4_1g09751 FvH4_1g12531 FvH4_1g19193 FvH4_2g07051 FvH4_2g17131 FvH4_2g17131 FvH4_2g28082 FvH4_5g08845 FvH4_5g26361 FvH4_5g26361 FvH4_5g26361 FvH4_5g26361 FvH4_5g39269 FvH4_6g36651 FvH4_6g38410 FvH4_7g04941 FvH4_7g04941
malus_domestica MD00G1156400.v1.1 MD02G1139600.v1.1 MD05G1144600.v1.1 MD06G1002400.v1.1 MD10G1143900.v1.1 MD15G1227300.v1.1 MD15G1252700.v1.1
prunus_persica Prupe.2G147900_v2.0.a1 Prupe.3G257900_v2.0.a1 Prupe.5G003600_v2.0.a1 Prupe.5G053800_v2.0.a1 Prupe.6G011300_v2.0.a1 Prupe.7G161400_v2.0.a1 Prupe.7G161500_v2.0.a1 Prupe.7G188000_v2.0.a1 Prupe.8G182700_v2.0.a1 Prupe.8G182700_v2.0.a1 Prupe.8G182700_v2.0.a1
pyrus_communis pycom02g11030 pycom05g13970 pycom06g00250 pycom10g12390 pycom10g12400 pycom15g20220 pycom15g22260 pycom17g05620
rosa_chinensis RchiOBHm_Chr2g0096701 RchiOBHm_Chr2g0100471 RchiOBHm_Chr2g0100481 RchiOBHm_Chr6g0281561 RchiOBHm_Chr7g0187081 RchiOBHm_Chr7g0217201 RchiOBHm_Chr7g0228321
rosa_laevigata RLG00000001574 RLG00000002527 RLG00000008169 RLG00000011104 RLG00000012963 RLG00000013720 RLG00000014615 RLG00000016663 RLG00000018214 RLG00000018621 RLG00000018622 RLG00000022494
rosa_multiflora Rmu_co8187762.1_g000001 Rmu_co8276569.1_g000001 Rmu_sc0000528.1_g000025 Rmu_sc0001095.1_g000001 Rmu_sc0001095.1_g000002 Rmu_sc0001167.1_g000007 Rmu_sc0001758.1_g000042 Rmu_sc0002147.1_g000004 Rmu_sc0002489.1_g000048 Rmu_sc0002564.1_g000015 Rmu_sc0002902.1_g000037 Rmu_sc0003565.1_g000022 Rmu_sc0003576.1_g000008 Rmu_sc0003720.1_g000022 Rmu_sc0003720.1_g000023 Rmu_sc0003862.1_g000023 Rmu_sc0006475.1_g000009 Rmu_sc0006475.1_g000010 Rmu_sc0006735.1_g000001 Rmu_sc0007586.1_g000004 Rmu_sc0009650.1_g000010 Rmu_sc0010963.1_g000005 Rmu_sc0012557.1_g000002 Rmu_sc0020744.1_g000001 Rmu_sc0020745.1_g000002 Rmu_sc0022201.1_g000001 Rmu_sc0022408.1_g000011 Rmu_sc0023414.1_g000001 Rmu_sc0025101.1_g000001 Rmu_ssc0000211.1_g000015 Rmu_ssc0000240.1_g000012
rosa_roxburghii Rroxscaffold_1G00013940 Rroxscaffold_1G00018420 Rroxscaffold_2G00142210 Rroxscaffold_2G00142230 Rroxscaffold_2G00145400 Rroxscaffold_3G00240120 Rroxscaffold_3G00240150 Rroxscaffold_3G00242500 Rroxscaffold_5G00346610 Rroxscaffold_5G00356000 Rroxscaffold_7G00187000 Rroxscaffold_7G00212120
rosa_rugosa Rorug01G0260900 Rorug01G0446900 Rorug02G0059800 Rorug02G0059900 Rorug02G0088400 Rorug02G0088500 Rorug02G0522300 Rorug03G0234100 Rorug03G0234100 Rorug03G0242400 Rorug04G0109900 Rorug04G0326100 Rorug05G0275900 Rorug06G0141600 Rorug06G0141700 Rorug06G0141700 Rorug07G0167200 Rorug07G0247000 Rorug07G0247000 Rorug07G0247100.1
rosa_samantha Rh1AG046800 Rh1AG111600 Rh1AG242600 Rh1CG226400 Rh1DG086400 Rh2AG107200 Rh2AG138100 Rh2AG528600 Rh2BG109600 Rh2BG141200 Rh2BG273400 Rh2BG357800 Rh2BG640200 Rh2CG111400 Rh2CG143400 Rh2CG161100 Rh2CG251300 Rh2DG111000 Rh2DG142900 Rh2DG651100 Rh3BG318000 Rh4AG167800 Rh4AG253700 Rh5AG282900 Rh6AG254100 Rh6BG257100 Rh6CG256400 Rh6DG248200 Rh7AG306100 Rh7BG297500 Rh7CG325200 Rh7CG420200 Rh7DG306000
rosa_wichuraiana Rw2G008310 Rw2G010790 Rw2G010800 Rw2G013840 Rw2G022430 Rw3G020550 Rw3G024980 Rw3G025930 Rw5G026810 Rw5G035870 Rw6G022060 Rw6G030700 Rw7G007420 Rw7G026010 Rw7G033340 Rw7G037700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 318
AciI CCGC 3 cut(s) 510, 629, 764
AclI AACGTT 1 cut(s) 535
AcsI RAATTY 1 cut(s) 121
AfaI GTAC 1 cut(s) 369
AfiI CCNNNNNNNGG 2 cut(s) 362, 644
AflIII ACRYGT 1 cut(s) 111
AgsI TTSAA 3 cut(s) 17, 436, 784
AjuI GAANNNNNNNTTGG 2 cut(s) 416, 448
AleI CACNNNNGTG 1 cut(s) 363
AluBI AGCT 2 cut(s) 61, 329
AluI AGCT 2 cut(s) 61, 329
Alw21I GWGCWC 1 cut(s) 331
ApeKI GCWGC 1 cut(s) 618
ApoI RAATTY 1 cut(s) 121
AseI ATTAAT 1 cut(s) 681
AspLEI GCGC 1 cut(s) 571
AspS9I GGNCC 1 cut(s) 657
AsuC2I CCSGG 1 cut(s) 39
AsuII TTCGAA 1 cut(s) 650
AvaII GGWCC 1 cut(s) 657
BanII GRGCYC 1 cut(s) 331
Bbv12I GWGCWC 1 cut(s) 331
BbvI GCAGC 1 cut(s) 630
BccI CCATC 2 cut(s) 662, 725
BclI TGATCA 2 cut(s) 504, 718
BcnI CCSGG 1 cut(s) 39
BisI GCNGC 1 cut(s) 619
BlsI GCNGC 1 cut(s) 620
Bme1390I CCNGG 1 cut(s) 39
Bme18I GGWCC 1 cut(s) 657
BmgT120I GGNCC 1 cut(s) 657
BmiI GGNNCC 2 cut(s) 548, 659
BmrFI CCNGG 1 cut(s) 39
BmsI GCATC 3 cut(s) 265, 484, 595
Bpu14I TTCGAA 1 cut(s) 650
BpuEI CTTGAG 2 cut(s) 107, 572
BpuMI CCSGG 1 cut(s) 39
BsaWI WCCGGW 1 cut(s) 644
Bsc4I CCNNNNNNNGG 2 cut(s) 362, 644
Bse1I ACTGG 2 cut(s) 142, 161
Bse3DI GCAATG 1 cut(s) 81
BseGI GGATG 3 cut(s) 28, 586, 721
BseLI CCNNNNNNNGG 2 cut(s) 362, 644
BseMI GCAATG 1 cut(s) 81
BseMII CTCAG 1 cut(s) 119
BseNI ACTGG 2 cut(s) 142, 161
BseRI GAGGAG 1 cut(s) 20
BseXI GCAGC 1 cut(s) 630
BsiHKAI GWGCWC 1 cut(s) 331
BsiSI CCGG 2 cut(s) 38, 645
BslFI GGGAC 1 cut(s) 643
BslI CCNNNNNNNGG 2 cut(s) 362, 644
BsmFI GGGAC 1 cut(s) 643
Bsp119I TTCGAA 1 cut(s) 650
Bsp1286I GDGCHC 1 cut(s) 331
Bsp143I GATC 3 cut(s) 504, 718, 768
BspACI CCGC 3 cut(s) 510, 629, 764
BspCNI CTCAG 1 cut(s) 118
BspLI GGNNCC 2 cut(s) 548, 659
BspT104I TTCGAA 1 cut(s) 650
BsrDI GCAATG 1 cut(s) 81
BsrI ACTGG 2 cut(s) 142, 161
BssMI GATC 3 cut(s) 504, 718, 768
Bst4CI ACNGT 1 cut(s) 152
Bst6I CTCTTC 3 cut(s) 12, 647, 735
BstBI TTCGAA 1 cut(s) 650
BstC8I GCNNGC 2 cut(s) 280, 345
BstDEI CTNAG 3 cut(s) 45, 105, 702
BstEII GGTNACC 1 cut(s) 137
BstF5I GGATG 3 cut(s) 28, 586, 721
BstHHI GCGC 1 cut(s) 571
BstKTI GATC 3 cut(s) 507, 721, 771
BstMBI GATC 3 cut(s) 504, 718, 768
BstMWI GCNNNNNNNGC 1 cut(s) 555
BstNSI RCATGY 1 cut(s) 115
BstPI GGTNACC 1 cut(s) 137
BstSCI CCNGG 1 cut(s) 37
BstV1I GCAGC 1 cut(s) 630
BtsCI GGATG 3 cut(s) 28, 586, 721
BtsIMutI CAGTG 1 cut(s) 149
Cac8I GCNNGC 2 cut(s) 280, 345
CfoI GCGC 1 cut(s) 571
Cfr13I GGNCC 1 cut(s) 657
CseI GACGC 2 cut(s) 71, 624
Csp6I GTAC 1 cut(s) 368
CviAII CATG 5 cut(s) 112, 176, 192, 338, 560
CviQI GTAC 1 cut(s) 368
DdeI CTNAG 3 cut(s) 45, 105, 702
DpnI GATC 3 cut(s) 506, 720, 770
DpnII GATC 3 cut(s) 504, 718, 768
DraI TTTAAA 1 cut(s) 126
Eam1104I CTCTTC 3 cut(s) 12, 647, 735
EarI CTCTTC 3 cut(s) 12, 647, 735
EciI GGCGGA 1 cut(s) 618
Ecl136II GAGCTC 1 cut(s) 329
Eco24I GRGCYC 1 cut(s) 331
Eco47I GGWCC 1 cut(s) 657
Eco53kI GAGCTC 1 cut(s) 329
Eco91I GGTNACC 1 cut(s) 137
EcoICRI GAGCTC 1 cut(s) 329
EcoO109I RGGNCCY 1 cut(s) 657
EcoO65I GGTNACC 1 cut(s) 137
EcoT38I GRGCYC 1 cut(s) 331
FaeI CATG 5 cut(s) 115, 179, 195, 341, 563
FalI AAGNNNNNCTT 2 cut(s) 394, 426
FaqI GGGAC 1 cut(s) 643
FatI CATG 5 cut(s) 111, 175, 191, 337, 559
FbaI TGATCA 2 cut(s) 504, 718
Fnu4HI GCNGC 1 cut(s) 619
FokI GGATG 3 cut(s) 35, 573, 728
FriOI GRGCYC 1 cut(s) 331
Fsp4HI GCNGC 1 cut(s) 619
GlaI GCGC 1 cut(s) 570
GluI GCNGC 1 cut(s) 619
HapII CCGG 2 cut(s) 38, 645
HgaI GACGC 2 cut(s) 71, 624
HhaI GCGC 1 cut(s) 571
Hin1II CATG 5 cut(s) 115, 179, 195, 341, 563
Hin6I GCGC 1 cut(s) 569
HinP1I GCGC 1 cut(s) 569
HinfI GANTC 5 cut(s) 225, 308, 418, 625, 746
HpaII CCGG 2 cut(s) 38, 645
Hpy166II GTNNAC 1 cut(s) 368
Hpy188I TCNGA 4 cut(s) 491, 614, 667, 751
Hpy188III TCNNGA 4 cut(s) 86, 107, 293, 722
Hpy8I GTNNAC 1 cut(s) 368
Hpy99I CGWCG 1 cut(s) 618
HpyAV CCTTC 5 cut(s) 49, 164, 462, 642, 691
HpyCH4III ACNGT 1 cut(s) 152
HpyCH4IV ACGT 2 cut(s) 300, 535
HpyCH4V TGCA 3 cut(s) 147, 278, 497
HpyF10VI GCNNNNNNNGC 1 cut(s) 555
HpyF3I CTNAG 3 cut(s) 45, 105, 702
HpySE526I ACGT 2 cut(s) 300, 535
Hsp92II CATG 5 cut(s) 115, 179, 195, 341, 563
HspAI GCGC 1 cut(s) 569
Ksp22I TGATCA 2 cut(s) 504, 718
Kzo9I GATC 3 cut(s) 504, 718, 768
LmnI GCTCC 3 cut(s) 58, 334, 546
LpnPI CCDG 9 cut(s) 51, 92, 155, 174, 357, 377, 449, 635, 658
Lsp1109I GCAGC 1 cut(s) 630
LweI GCATC 3 cut(s) 265, 484, 595
MaeII ACGT 2 cut(s) 300, 535
MaeIII GTNAC 2 cut(s) 137, 152
MalI GATC 3 cut(s) 506, 720, 770
MboI GATC 3 cut(s) 504, 718, 768
MboII GAAGA 7 cut(s) 29, 38, 268, 303, 664, 706, 752
MhlI GDGCHC 1 cut(s) 331
MluCI AATT 5 cut(s) 121, 397, 424, 436, 707
MmeI TCCRAC 3 cut(s) 96, 386, 637
MnlI CCTC 9 cut(s) 13, 64, 195, 366, 381, 466, 488, 648, 736
MseI TTAA 5 cut(s) 125, 165, 351, 401, 681
MslI CAYNNNNRTG 1 cut(s) 363
MspA1I CMGCKG 2 cut(s) 510, 766
MspI CCGG 2 cut(s) 38, 645
MspR9I CCNGG 1 cut(s) 39
MwoI GCNNNNNNNGC 1 cut(s) 555
NciI CCSGG 1 cut(s) 39
NdeII GATC 3 cut(s) 504, 718, 768
NlaIII CATG 5 cut(s) 115, 179, 195, 341, 563
NlaIV GGNNCC 2 cut(s) 548, 659
NmuCI GTSAC 1 cut(s) 152
NspI RCATGY 1 cut(s) 115
NspV TTCGAA 1 cut(s) 650
OliI CACNNNNGTG 1 cut(s) 363
PciI ACATGT 1 cut(s) 111
PfeI GAWTC 5 cut(s) 225, 308, 418, 625, 746
PkrI GCNGC 1 cut(s) 620
PpuMI RGGWCCY 1 cut(s) 657
PscI ACATGT 1 cut(s) 111
PshBI ATTAAT 1 cut(s) 681
PsiI TTATAA 1 cut(s) 318
Psp124BI GAGCTC 1 cut(s) 331
Psp1406I AACGTT 1 cut(s) 535
Psp5II RGGWCCY 1 cut(s) 657
PspEI GGTNACC 1 cut(s) 137
PspN4I GGNNCC 2 cut(s) 548, 659
PspPI GGNCC 1 cut(s) 657
PspPPI RGGWCCY 1 cut(s) 657
RsaI GTAC 1 cut(s) 369
RsaNI GTAC 1 cut(s) 368
RseI CAYNNNNRTG 1 cut(s) 363
SacI GAGCTC 1 cut(s) 331
SaqAI TTAA 5 cut(s) 125, 165, 351, 401, 681
SatI GCNGC 1 cut(s) 619
Sau3AI GATC 3 cut(s) 504, 718, 768
Sau96I GGNCC 1 cut(s) 657
ScrFI CCNGG 1 cut(s) 39
SduI GDGCHC 1 cut(s) 331
SetI ASST 9 cut(s) 63, 175, 187, 303, 331, 373, 468, 538, 659
SfaNI GCATC 3 cut(s) 265, 484, 595
SfuI TTCGAA 1 cut(s) 650
SinI GGWCC 1 cut(s) 657
SmiMI CAYNNNNRTG 1 cut(s) 363
SmlI CTYRAG 2 cut(s) 86, 551
SmoI CTYRAG 2 cut(s) 86, 551
Sse9I AATT 5 cut(s) 121, 397, 424, 436, 707
SsiI CCGC 3 cut(s) 510, 629, 764
SstI GAGCTC 1 cut(s) 331
StyD4I CCNGG 1 cut(s) 37
TaaI ACNGT 1 cut(s) 152
TaiI ACGT 2 cut(s) 303, 538
TaqI TCGA 2 cut(s) 650, 771
TasI AATT 5 cut(s) 121, 397, 424, 436, 707
TfiI GAWTC 5 cut(s) 225, 308, 418, 625, 746
Tru1I TTAA 5 cut(s) 125, 165, 351, 401, 681
Tru9I TTAA 5 cut(s) 125, 165, 351, 401, 681
TscAI CASTG 1 cut(s) 149
TseFI GTSAC 1 cut(s) 152
TseI GCWGC 1 cut(s) 618
Tsp45I GTSAC 1 cut(s) 152
TspDTI ATGAA 6 cut(s) 39, 92, 183, 234, 326, 374
TspGWI ACGGA 1 cut(s) 268
TspRI CASTG 1 cut(s) 149
VpaK11BI GGWCC 1 cut(s) 657
VspI ATTAAT 1 cut(s) 681
XapI RAATTY 1 cut(s) 121
XceI RCATGY 1 cut(s) 115
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.