FvH4_5g08845

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000165
Physical Location & Seq
Forward (+)
5102253 .. 5104019
1767 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g08845.t1

Sequence Viewer

Length: 1068 bp
ATGTCTAATTCAGGGAAAGGCCACAGCAAGGCGCATCCAGTGTTTCCTAGTTGGATTAATTACATCAAGAAGAGGAATACTCCTTCGGGATTGAAACAGCACTGCGATCCGGAGTCCTCCCGGAGGACCACGTGGCGTTGCCTAATGGTCCTCTTCACCTATAAAATGTTGACATGTGACACTTTTTTGACAACTCAGAAGAAGAAGATAAACCCTAAAACATATATTGTTGCTACCTTTATTGTTGCTATCTCATTAGTCATCAATCTTGTCAGTTTCTACAAAGACCGCAACTTGTCTCCAGCAAAGACTTCAACTTGTCTCCAACAAGAGTTGTGCAATATGGCAGACAATGATTGTAATCAAGTGATTGACATAGAGGACGATGAGGAAGATATCATGACATCTAATTTGGAGAAACATCCGATGATTGTGAATCGTCAAGCTAGTAATGATGAAAATTTGTTTGGAGTAACGGTGAATAGCGAGGAAGAAGCATACAACCTCTACTGTGAGTATGGTGTCAGAATAGGGTTTAGTGTTCGGATAGACAAGAGGAGGAAAACCAACAATGTTGTCAGGCAAGTAAATTATTGTTGTTCCAAAGAAGGTTTTAAACTAGACAGTGACCCTTCAGAAGTGAACAAGACTCACAGACTTGAAACTAGAATTGGTTGCCCAGCGAAAATTCGATTCGGATTGCAAGAGAATAATTTATGGAAAGTGACTCTCTTTGTTCCTGAACACAACCACAGACTTGCAGACCCAGAAGAAAGACAGTATTTGCGCTCTAATCGAAAACTATTAGTAGCTCATAAGGGGGTGATTAGATCAATGAAAAGCGCAGGCATGAGTACTTGCAATACTTATTCATATTTAGCAGAAGAAGTCGGGGGATCTCAAAATGTTGGATTTACAAAGACCGATTGTTATAATTTTGTAAGCAGAGAGAGAATGGAGATGCTTGAAGCAGGGGACGCTCAGAGCTTGATAAACTTATTCAAGAAAAGCAAATTGAAGATCCCATGTTTTTCTACACCGTGCAAGTTGATCAAGAGAATTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE PEARLI-4 SWIM

Protein Analysis

356

Amino Acids

40.68

Weight (kDa)

9.07

Isoelectric Point (pI)

43.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 169 - 254 1.7e-21 FAR1 DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000165)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38180
fragaria_vesca FvH4_1g09751 FvH4_1g09751 FvH4_1g09751 FvH4_1g12531 FvH4_1g19193 FvH4_2g07051 FvH4_2g17131 FvH4_2g17131 FvH4_2g28082 FvH4_5g08845 FvH4_5g26361 FvH4_5g26361 FvH4_5g26361 FvH4_5g26361 FvH4_5g39269 FvH4_6g36651 FvH4_6g38410 FvH4_7g04941 FvH4_7g04941
malus_domestica MD00G1156400.v1.1 MD02G1139600.v1.1 MD05G1144600.v1.1 MD06G1002400.v1.1 MD10G1143900.v1.1 MD15G1227300.v1.1 MD15G1252700.v1.1
prunus_persica Prupe.2G147900_v2.0.a1 Prupe.3G257900_v2.0.a1 Prupe.5G003600_v2.0.a1 Prupe.5G053800_v2.0.a1 Prupe.6G011300_v2.0.a1 Prupe.7G161400_v2.0.a1 Prupe.7G161500_v2.0.a1 Prupe.7G188000_v2.0.a1 Prupe.8G182700_v2.0.a1 Prupe.8G182700_v2.0.a1 Prupe.8G182700_v2.0.a1
pyrus_communis pycom02g11030 pycom05g13970 pycom06g00250 pycom10g12390 pycom10g12400 pycom15g20220 pycom15g22260 pycom17g05620
rosa_chinensis RchiOBHm_Chr2g0096701 RchiOBHm_Chr2g0100471 RchiOBHm_Chr2g0100481 RchiOBHm_Chr6g0281561 RchiOBHm_Chr7g0187081 RchiOBHm_Chr7g0217201 RchiOBHm_Chr7g0228321
rosa_laevigata RLG00000001574 RLG00000002527 RLG00000008169 RLG00000011104 RLG00000012963 RLG00000013720 RLG00000014615 RLG00000016663 RLG00000018214 RLG00000018621 RLG00000018622 RLG00000022494
rosa_multiflora Rmu_co8187762.1_g000001 Rmu_co8276569.1_g000001 Rmu_sc0000528.1_g000025 Rmu_sc0001095.1_g000001 Rmu_sc0001095.1_g000002 Rmu_sc0001167.1_g000007 Rmu_sc0001758.1_g000042 Rmu_sc0002147.1_g000004 Rmu_sc0002489.1_g000048 Rmu_sc0002564.1_g000015 Rmu_sc0002902.1_g000037 Rmu_sc0003565.1_g000022 Rmu_sc0003576.1_g000008 Rmu_sc0003720.1_g000022 Rmu_sc0003720.1_g000023 Rmu_sc0003862.1_g000023 Rmu_sc0006475.1_g000009 Rmu_sc0006475.1_g000010 Rmu_sc0006735.1_g000001 Rmu_sc0007586.1_g000004 Rmu_sc0009650.1_g000010 Rmu_sc0010963.1_g000005 Rmu_sc0012557.1_g000002 Rmu_sc0020744.1_g000001 Rmu_sc0020745.1_g000002 Rmu_sc0022201.1_g000001 Rmu_sc0022408.1_g000011 Rmu_sc0023414.1_g000001 Rmu_sc0025101.1_g000001 Rmu_ssc0000211.1_g000015 Rmu_ssc0000240.1_g000012
rosa_roxburghii Rroxscaffold_1G00013940 Rroxscaffold_1G00018420 Rroxscaffold_2G00142210 Rroxscaffold_2G00142230 Rroxscaffold_2G00145400 Rroxscaffold_3G00240120 Rroxscaffold_3G00240150 Rroxscaffold_3G00242500 Rroxscaffold_5G00346610 Rroxscaffold_5G00356000 Rroxscaffold_7G00187000 Rroxscaffold_7G00212120
rosa_rugosa Rorug01G0260900 Rorug01G0446900 Rorug02G0059800 Rorug02G0059900 Rorug02G0088400 Rorug02G0088500 Rorug02G0522300 Rorug03G0234100 Rorug03G0234100 Rorug03G0242400 Rorug04G0109900 Rorug04G0326100 Rorug05G0275900 Rorug06G0141600 Rorug06G0141700 Rorug06G0141700 Rorug07G0167200 Rorug07G0247000 Rorug07G0247000 Rorug07G0247100.1
rosa_samantha Rh1AG046800 Rh1AG111600 Rh1AG242600 Rh1CG226400 Rh1DG086400 Rh2AG107200 Rh2AG138100 Rh2AG528600 Rh2BG109600 Rh2BG141200 Rh2BG273400 Rh2BG357800 Rh2BG640200 Rh2CG111400 Rh2CG143400 Rh2CG161100 Rh2CG251300 Rh2DG111000 Rh2DG142900 Rh2DG651100 Rh3BG318000 Rh4AG167800 Rh4AG253700 Rh5AG282900 Rh6AG254100 Rh6BG257100 Rh6CG256400 Rh6DG248200 Rh7AG306100 Rh7BG297500 Rh7CG325200 Rh7CG420200 Rh7DG306000
rosa_wichuraiana Rw2G008310 Rw2G010790 Rw2G010800 Rw2G013840 Rw2G022430 Rw3G020550 Rw3G024980 Rw3G025930 Rw5G026810 Rw5G035870 Rw6G022060 Rw6G030700 Rw7G007420 Rw7G026010 Rw7G033340 Rw7G037700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 933
AccIII TCCGGA 1 cut(s) 109
AciI CCGC 1 cut(s) 289
AclWI GGATC 3 cut(s) 101, 904, 1015
AcsI RAATTY 2 cut(s) 460, 687
AcuI CTGAAG 1 cut(s) 618
AcvI CACGTG 1 cut(s) 132
AfaI GTAC 1 cut(s) 856
AfiI CCNNNNNNNGG 2 cut(s) 28, 123
AflIII ACRYGT 1 cut(s) 173
AgsI TTSAA 6 cut(s) 94, 315, 662, 968, 1003, 1018
AjuI GAANNNNNNNTTGG 4 cut(s) 450, 482, 654, 686
AluBI AGCT 3 cut(s) 446, 812, 987
AluI AGCT 3 cut(s) 446, 812, 987
Alw26I GTCTC 2 cut(s) 303, 326
AlwI GGATC 3 cut(s) 101, 904, 1015
Aor13HI TCCGGA 1 cut(s) 109
AoxI GGCC 1 cut(s) 19
ApoI RAATTY 2 cut(s) 460, 687
ArsI GACNNNNNNTTYG 2 cut(s) 394, 426
AseI ATTAAT 1 cut(s) 57
AspLEI GCGC 3 cut(s) 34, 789, 845
AspS9I GGNCC 2 cut(s) 126, 148
AsuC2I CCSGG 1 cut(s) 121
AsuHPI GGTGA 3 cut(s) 148, 490, 835
AvaII GGWCC 2 cut(s) 126, 148
BbrPI CACGTG 1 cut(s) 132
BclI TGATCA 1 cut(s) 1050
BcnI CCSGG 1 cut(s) 121
BcoDI GTCTC 2 cut(s) 303, 326
BfaI CTAG 4 cut(s) 48, 447, 620, 666
BmcAI AGTACT 1 cut(s) 856
Bme1390I CCNGG 1 cut(s) 121
Bme18I GGWCC 2 cut(s) 126, 148
BmgT120I GGNCC 2 cut(s) 126, 148
BmrFI CCNGG 1 cut(s) 121
BmsI GCATC 2 cut(s) 43, 951
BplI GAGNNNNNCTC 2 cut(s) 64, 96
BpmI CTGGAG 1 cut(s) 285
BpuMI CCSGG 1 cut(s) 121
BsaAI YACGTR 1 cut(s) 132
BsaBI GATNNNNATC 1 cut(s) 360
BsaWI WCCGGW 1 cut(s) 109
BsaXI ACNNNNNCTCC 2 cut(s) 462, 492
Bsc4I CCNNNNNNNGG 2 cut(s) 28, 123
Bse1I ACTGG 1 cut(s) 38
Bse8I GATNNNNATC 1 cut(s) 360
BseAI TCCGGA 1 cut(s) 109
BseGI GGATG 2 cut(s) 34, 421
BseJI GATNNNNATC 1 cut(s) 360
BseLI CCNNNNNNNGG 2 cut(s) 28, 123
BseMII CTCAG 2 cut(s) 209, 995
BseNI ACTGG 1 cut(s) 38
BseRI GAGGAG 1 cut(s) 571
BseYI CCCAGC 1 cut(s) 679
BshFI GGCC 1 cut(s) 21
BsiSI CCGG 2 cut(s) 110, 121
BslFI GGGAC 1 cut(s) 989
BslI CCNNNNNNNGG 2 cut(s) 28, 123
BsmAI GTCTC 2 cut(s) 303, 326
BsmFI GGGAC 1 cut(s) 989
BsnI GGCC 1 cut(s) 21
Bsp13I TCCGGA 1 cut(s) 109
Bsp143I GATC 5 cut(s) 106, 830, 896, 1020, 1050
BspACI CCGC 1 cut(s) 289
BspANI GGCC 1 cut(s) 21
BspCNI CTCAG 2 cut(s) 208, 994
BspEI TCCGGA 1 cut(s) 109
BspHI TCATGA 1 cut(s) 399
BspPI GGATC 3 cut(s) 101, 904, 1015
BsrI ACTGG 1 cut(s) 38
BssMI GATC 5 cut(s) 106, 830, 896, 1020, 1050
Bst4CI ACNGT 5 cut(s) 478, 512, 626, 780, 1041
Bst6I CTCTTC 2 cut(s) 65, 158
BstBAI YACGTR 1 cut(s) 132
BstC8I GCNNGC 1 cut(s) 847
BstDEI CTNAG 2 cut(s) 195, 981
BstENI CCTNNNNNAGG 1 cut(s) 121
BstF5I GGATG 2 cut(s) 34, 421
BstHHI GCGC 3 cut(s) 34, 789, 845
BstKTI GATC 5 cut(s) 109, 833, 899, 1023, 1053
BstMAI GTCTC 2 cut(s) 303, 326
BstMBI GATC 5 cut(s) 106, 830, 896, 1020, 1050
BstMWI GCNNNNNNNGC 1 cut(s) 977
BstNSI RCATGY 1 cut(s) 177
BstSCI CCNGG 1 cut(s) 119
BstX2I RGATCY 2 cut(s) 896, 1020
BstYI RGATCY 2 cut(s) 896, 1020
BsuRI GGCC 1 cut(s) 21
BtsCI GGATG 2 cut(s) 34, 421
BtsI GCAGTG 1 cut(s) 100
BtsIMutI CAGTG 3 cut(s) 45, 100, 631
Cac8I GCNNGC 1 cut(s) 847
CciI TCATGA 1 cut(s) 399
CfoI GCGC 3 cut(s) 34, 789, 845
Cfr13I GGNCC 2 cut(s) 126, 148
CseI GACGC 1 cut(s) 986
Csp6I GTAC 1 cut(s) 855
CviAII CATG 4 cut(s) 174, 400, 850, 1026
CviJI RGCY 4 cut(s) 21, 446, 812, 987
CviKI_1 RGCY 4 cut(s) 21, 446, 812, 987
CviQI GTAC 1 cut(s) 855
DdeI CTNAG 2 cut(s) 195, 981
DpnI GATC 5 cut(s) 108, 832, 898, 1022, 1052
DpnII GATC 5 cut(s) 106, 830, 896, 1020, 1050
DraI TTTAAA 1 cut(s) 616
Eam1104I CTCTTC 2 cut(s) 65, 158
EarI CTCTTC 2 cut(s) 65, 158
Eco32I GATATC 1 cut(s) 397
Eco47I GGWCC 2 cut(s) 126, 148
Eco57I CTGAAG 1 cut(s) 618
Eco72I CACGTG 1 cut(s) 132
EcoNI CCTNNNNNAGG 1 cut(s) 121
EcoRV GATATC 1 cut(s) 397
FaeI CATG 4 cut(s) 177, 403, 853, 1029
FaqI GGGAC 1 cut(s) 989
FatI CATG 4 cut(s) 173, 399, 849, 1025
FbaI TGATCA 1 cut(s) 1050
FokI GGATG 2 cut(s) 21, 408
FspBI CTAG 4 cut(s) 48, 447, 620, 666
GlaI GCGC 3 cut(s) 33, 788, 844
GsaI CCCAGC 1 cut(s) 683
GsuI CTGGAG 1 cut(s) 285
HaeIII GGCC 1 cut(s) 21
HapII CCGG 2 cut(s) 110, 121
HgaI GACGC 1 cut(s) 986
HhaI GCGC 3 cut(s) 34, 789, 845
Hin1II CATG 4 cut(s) 177, 403, 853, 1029
Hin6I GCGC 3 cut(s) 32, 787, 843
HinP1I GCGC 3 cut(s) 32, 787, 843
HincII GTYRAC 1 cut(s) 171
HindII GTYRAC 1 cut(s) 171
HinfI GANTC 5 cut(s) 113, 436, 649, 693, 727
HpaII CCGG 2 cut(s) 110, 121
HphI GGTGA 3 cut(s) 148, 490, 835
Hpy166II GTNNAC 2 cut(s) 171, 643
Hpy188I TCNGA 7 cut(s) 198, 426, 527, 546, 637, 698, 984
Hpy188III TCNNGA 7 cut(s) 67, 87, 110, 400, 740, 1003, 1054
Hpy8I GTNNAC 2 cut(s) 171, 643
HpyAV CCTTC 3 cut(s) 93, 602, 642
HpyCH4III ACNGT 5 cut(s) 478, 512, 626, 780, 1041
HpyCH4IV ACGT 1 cut(s) 131
HpyCH4V TGCA 5 cut(s) 339, 703, 761, 861, 1044
HpyF10VI GCNNNNNNNGC 1 cut(s) 977
HpyF3I CTNAG 2 cut(s) 195, 981
HpySE526I ACGT 1 cut(s) 131
Hsp92II CATG 4 cut(s) 177, 403, 853, 1029
HspAI GCGC 3 cut(s) 32, 787, 843
Kpn2I TCCGGA 1 cut(s) 109
Ksp22I TGATCA 1 cut(s) 1050
Kzo9I GATC 5 cut(s) 106, 830, 896, 1020, 1050
LweI GCATC 2 cut(s) 43, 951
MaeI CTAG 4 cut(s) 48, 447, 620, 666
MaeII ACGT 1 cut(s) 131
MaeIII GTNAC 4 cut(s) 176, 472, 626, 724
MalI GATC 5 cut(s) 108, 832, 898, 1022, 1052
MboI GATC 5 cut(s) 106, 830, 896, 1020, 1050
MflI RGATCY 2 cut(s) 896, 1020
MlyI GAGTC 3 cut(s) 122, 643, 721
MmeI TCCRAC 3 cut(s) 32, 349, 889
MroI TCCGGA 1 cut(s) 109
MseI TTAA 2 cut(s) 57, 615
MspI CCGG 2 cut(s) 110, 121
MspR9I CCNGG 1 cut(s) 121
MwoI GCNNNNNNNGC 1 cut(s) 977
NciI CCSGG 1 cut(s) 121
NdeII GATC 5 cut(s) 106, 830, 896, 1020, 1050
NlaIII CATG 4 cut(s) 177, 403, 853, 1029
NmuCI GTSAC 3 cut(s) 176, 626, 724
NspI RCATGY 1 cut(s) 177
PagI TCATGA 1 cut(s) 399
PciI ACATGT 1 cut(s) 173
PfeI GAWTC 2 cut(s) 436, 693
PfoI TCCNGGA 1 cut(s) 119
PleI GAGTC 3 cut(s) 121, 643, 721
PmaCI CACGTG 1 cut(s) 132
PmlI CACGTG 1 cut(s) 132
PpsI GAGTC 3 cut(s) 121, 643, 721
Ppu21I YACGTR 1 cut(s) 132
PscI ACATGT 1 cut(s) 173
PshBI ATTAAT 1 cut(s) 57
PsiI TTATAA 1 cut(s) 933
PspCI CACGTG 1 cut(s) 132
PspFI CCCAGC 1 cut(s) 679
PspPI GGNCC 2 cut(s) 126, 148
PsuI RGATCY 2 cut(s) 896, 1020
RsaI GTAC 1 cut(s) 856
RsaNI GTAC 1 cut(s) 855
SaqAI TTAA 2 cut(s) 57, 615
Sau3AI GATC 5 cut(s) 106, 830, 896, 1020, 1050
Sau96I GGNCC 2 cut(s) 126, 148
ScaI AGTACT 1 cut(s) 856
SchI GAGTC 3 cut(s) 122, 643, 721
ScrFI CCNGG 1 cut(s) 121
SetI ASST 8 cut(s) 134, 161, 239, 448, 507, 613, 814, 989
SfaNI GCATC 2 cut(s) 43, 951
SinI GGWCC 2 cut(s) 126, 148
SsiI CCGC 1 cut(s) 289
SspMI CTAG 4 cut(s) 48, 447, 620, 666
StyD4I CCNGG 1 cut(s) 119
TaaI ACNGT 5 cut(s) 478, 512, 626, 780, 1041
TaiI ACGT 1 cut(s) 134
TaqI TCGA 2 cut(s) 691, 796
TaqII GACCGA 1 cut(s) 938
TatI WGTACW 1 cut(s) 854
TfiI GAWTC 2 cut(s) 436, 693
Tru1I TTAA 2 cut(s) 57, 615
Tru9I TTAA 2 cut(s) 57, 615
TscAI CASTG 3 cut(s) 45, 107, 631
TseFI GTSAC 3 cut(s) 176, 626, 724
Tsp45I GTSAC 3 cut(s) 176, 626, 724
TspDTI ATGAA 3 cut(s) 471, 851, 861
TspRI CASTG 3 cut(s) 45, 107, 631
VpaK11BI GGWCC 2 cut(s) 126, 148
VspI ATTAAT 1 cut(s) 57
XagI CCTNNNNNAGG 1 cut(s) 121
XapI RAATTY 2 cut(s) 460, 687
XceI RCATGY 1 cut(s) 177
XspI CTAG 4 cut(s) 48, 447, 620, 666
ZrmI AGTACT 1 cut(s) 856
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.