Rh7CG420200

cyclic nucleotide-gated ion channel

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000165
Physical Location & Seq
Reverse (-)
54178110 .. 54180856
2747 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG420200.1

Sequence Viewer

Length: 564 bp
ATGCATGAAGGAAATAGTGTGTATGACATAGCCTCACTGACCGGTTCAGGTACTGAAATTGTCAAGGATCTGTTAAAAGAGGCAATGAAGAGCCTTGAAAAAGATAAGGACACTATCTACGTGTTGGAAAATTTAAAGAAACTTGGTGACCAATCTGACTCTGGCATTCCTAGTAATGAGATACTAGTTTTGAATCCACCAAGTGCAAAGACTAAAGGAATGAAAAATGCTAGAATCAAAGACGTGAGGGAGATAAACCAATGGAAGAAGAAAACAAAAGAACAAGAAAGCCAAGAAAACAATGATCCAAAAGCTCCAAATCATGTGTCTACATCTAATCATCAGTTTGGTATACTTAACACCTCATTTTATAATCAGGGAATTTTAAGTTGGCCTTTTGGACATCCCAATCCATTTTTTAGCTATGGTCAGATACCTTTCTCAAACCAAAATTCAACTTACTCAACTACAAGTCTGAATCTTGCACCAACTACAACTCTAACTACAAATACTACACTCAGACAACAACCTCAATTCTACATAATAGAAGAGCTACAGCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans

Protein Analysis

187

Amino Acids

21.02

Weight (kDa)

6.43

Isoelectric Point (pI)

41.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000165)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38180
fragaria_vesca FvH4_1g09751 FvH4_1g09751 FvH4_1g09751 FvH4_1g12531 FvH4_1g19193 FvH4_2g07051 FvH4_2g17131 FvH4_2g17131 FvH4_2g28082 FvH4_5g08845 FvH4_5g26361 FvH4_5g26361 FvH4_5g26361 FvH4_5g26361 FvH4_5g39269 FvH4_6g36651 FvH4_6g38410 FvH4_7g04941 FvH4_7g04941
malus_domestica MD00G1156400.v1.1 MD02G1139600.v1.1 MD05G1144600.v1.1 MD06G1002400.v1.1 MD10G1143900.v1.1 MD15G1227300.v1.1 MD15G1252700.v1.1
prunus_persica Prupe.2G147900_v2.0.a1 Prupe.3G257900_v2.0.a1 Prupe.5G003600_v2.0.a1 Prupe.5G053800_v2.0.a1 Prupe.6G011300_v2.0.a1 Prupe.7G161400_v2.0.a1 Prupe.7G161500_v2.0.a1 Prupe.7G188000_v2.0.a1 Prupe.8G182700_v2.0.a1 Prupe.8G182700_v2.0.a1 Prupe.8G182700_v2.0.a1
pyrus_communis pycom02g11030 pycom05g13970 pycom06g00250 pycom10g12390 pycom10g12400 pycom15g20220 pycom15g22260 pycom17g05620
rosa_chinensis RchiOBHm_Chr2g0096701 RchiOBHm_Chr2g0100471 RchiOBHm_Chr2g0100481 RchiOBHm_Chr6g0281561 RchiOBHm_Chr7g0187081 RchiOBHm_Chr7g0217201 RchiOBHm_Chr7g0228321
rosa_laevigata RLG00000001574 RLG00000002527 RLG00000008169 RLG00000011104 RLG00000012963 RLG00000013720 RLG00000014615 RLG00000016663 RLG00000018214 RLG00000018621 RLG00000018622 RLG00000022494
rosa_multiflora Rmu_co8187762.1_g000001 Rmu_co8276569.1_g000001 Rmu_sc0000528.1_g000025 Rmu_sc0001095.1_g000001 Rmu_sc0001095.1_g000002 Rmu_sc0001167.1_g000007 Rmu_sc0001758.1_g000042 Rmu_sc0002147.1_g000004 Rmu_sc0002489.1_g000048 Rmu_sc0002564.1_g000015 Rmu_sc0002902.1_g000037 Rmu_sc0003565.1_g000022 Rmu_sc0003576.1_g000008 Rmu_sc0003720.1_g000022 Rmu_sc0003720.1_g000023 Rmu_sc0003862.1_g000023 Rmu_sc0006475.1_g000009 Rmu_sc0006475.1_g000010 Rmu_sc0006735.1_g000001 Rmu_sc0007586.1_g000004 Rmu_sc0009650.1_g000010 Rmu_sc0010963.1_g000005 Rmu_sc0012557.1_g000002 Rmu_sc0020744.1_g000001 Rmu_sc0020745.1_g000002 Rmu_sc0022201.1_g000001 Rmu_sc0022408.1_g000011 Rmu_sc0023414.1_g000001 Rmu_sc0025101.1_g000001 Rmu_ssc0000211.1_g000015 Rmu_ssc0000240.1_g000012
rosa_roxburghii Rroxscaffold_1G00013940 Rroxscaffold_1G00018420 Rroxscaffold_2G00142210 Rroxscaffold_2G00142230 Rroxscaffold_2G00145400 Rroxscaffold_3G00240120 Rroxscaffold_3G00240150 Rroxscaffold_3G00242500 Rroxscaffold_5G00346610 Rroxscaffold_5G00356000 Rroxscaffold_7G00187000 Rroxscaffold_7G00212120
rosa_rugosa Rorug01G0260900 Rorug01G0446900 Rorug02G0059800 Rorug02G0059900 Rorug02G0088400 Rorug02G0088500 Rorug02G0522300 Rorug03G0234100 Rorug03G0234100 Rorug03G0242400 Rorug04G0109900 Rorug04G0326100 Rorug05G0275900 Rorug06G0141600 Rorug06G0141700 Rorug06G0141700 Rorug07G0167200 Rorug07G0247000 Rorug07G0247000 Rorug07G0247100.1
rosa_samantha Rh1AG046800 Rh1AG111600 Rh1AG242600 Rh1CG226400 Rh1DG086400 Rh2AG107200 Rh2AG138100 Rh2AG528600 Rh2BG109600 Rh2BG141200 Rh2BG273400 Rh2BG357800 Rh2BG640200 Rh2CG111400 Rh2CG143400 Rh2CG161100 Rh2CG251300 Rh2DG111000 Rh2DG142900 Rh2DG651100 Rh3BG318000 Rh4AG167800 Rh4AG253700 Rh5AG282900 Rh6AG254100 Rh6BG257100 Rh6CG256400 Rh6DG248200 Rh7AG306100 Rh7BG297500 Rh7CG325200 Rh7CG420200 Rh7DG306000
rosa_wichuraiana Rw2G008310 Rw2G010790 Rw2G010800 Rw2G013840 Rw2G022430 Rw3G020550 Rw3G024980 Rw3G025930 Rw5G026810 Rw5G035870 Rw6G022060 Rw6G030700 Rw7G007420 Rw7G026010 Rw7G033340 Rw7G037700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 372
AccI GTMKAC 2 cut(s) 329, 352
AclWI GGATC 2 cut(s) 75, 299
AcsI RAATTY 3 cut(s) 130, 381, 451
AdeI CACNNNGTG 1 cut(s) 203
AfaI GTAC 1 cut(s) 52
AflIII ACRYGT 1 cut(s) 120
AgeI ACCGGT 1 cut(s) 41
AgsI TTSAA 3 cut(s) 98, 193, 456
AhlI ACTAGT 1 cut(s) 184
AjiI CACGTC 1 cut(s) 244
AjuI GAANNNNNNNTTGG 2 cut(s) 373, 405
AluBI AGCT 3 cut(s) 314, 423, 553
AluI AGCT 3 cut(s) 314, 423, 553
AlwI GGATC 2 cut(s) 75, 299
AlwNI CAGNNNCTG 1 cut(s) 53
AoxI GGCC 1 cut(s) 392
ApoI RAATTY 3 cut(s) 130, 381, 451
ArsI GACNNNNNNTTYG 2 cut(s) 311, 343
AsiGI ACCGGT 1 cut(s) 41
AsuHPI GGTGA 1 cut(s) 158
BcuI ACTAGT 1 cut(s) 184
BfaI CTAG 3 cut(s) 171, 185, 231
BfmI CTRYAG 1 cut(s) 554
BmgBI CACGTC 1 cut(s) 244
BsaAI YACGTR 1 cut(s) 121
BsaWI WCCGGW 1 cut(s) 41
Bse118I RCCGGY 1 cut(s) 41
Bse3DI GCAATG 1 cut(s) 90
BseGI GGATG 1 cut(s) 403
BseMI GCAATG 1 cut(s) 90
BseMII CTCAG 1 cut(s) 532
BshFI GGCC 1 cut(s) 394
BshTI ACCGGT 1 cut(s) 41
BsiSI CCGG 1 cut(s) 42
BsmI GAATGC 1 cut(s) 165
BsnI GGCC 1 cut(s) 394
Bsp143I GATC 2 cut(s) 67, 304
BspANI GGCC 1 cut(s) 394
BspCNI CTCAG 1 cut(s) 531
BspPI GGATC 2 cut(s) 75, 299
BspQI GCTCTTC 2 cut(s) 83, 543
BsrDI GCAATG 1 cut(s) 90
BsrFI RCCGGY 1 cut(s) 41
BssAI RCCGGY 1 cut(s) 41
BssMI GATC 2 cut(s) 67, 304
BssNAI GTATAC 1 cut(s) 353
Bst1107I GTATAC 1 cut(s) 353
Bst6I CTCTTC 2 cut(s) 83, 543
BstBAI YACGTR 1 cut(s) 121
BstDEI CTNAG 1 cut(s) 518
BstEII GGTNACC 1 cut(s) 146
BstF5I GGATG 1 cut(s) 403
BstKTI GATC 2 cut(s) 70, 307
BstMBI GATC 2 cut(s) 67, 304
BstPI GGTNACC 1 cut(s) 146
BstSFI CTRYAG 1 cut(s) 554
BstX2I RGATCY 1 cut(s) 67
BstYI RGATCY 1 cut(s) 67
BstZ17I GTATAC 1 cut(s) 353
BsuRI GGCC 1 cut(s) 394
BtrI CACGTC 1 cut(s) 244
BtsCI GGATG 1 cut(s) 403
BtsIMutI CAGTG 1 cut(s) 35
CaiI CAGNNNCTG 1 cut(s) 53
Cfr10I RCCGGY 1 cut(s) 41
Csp6I GTAC 1 cut(s) 51
CspAI ACCGGT 1 cut(s) 41
CviAII CATG 2 cut(s) 5, 323
CviJI RGCY 8 cut(s) 32, 93, 291, 314, 394, 423, 553, 559
CviKI_1 RGCY 8 cut(s) 32, 93, 291, 314, 394, 423, 553, 559
CviQI GTAC 1 cut(s) 51
DdeI CTNAG 1 cut(s) 518
DpnI GATC 2 cut(s) 69, 306
DpnII GATC 2 cut(s) 67, 304
DraI TTTAAA 1 cut(s) 135
DraIII CACNNNGTG 1 cut(s) 203
Eam1104I CTCTTC 2 cut(s) 83, 543
EarI CTCTTC 2 cut(s) 83, 543
Eco91I GGTNACC 1 cut(s) 146
EcoO65I GGTNACC 1 cut(s) 146
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 2 cut(s) 8, 326
FaiI YATR 9 cut(s) 6, 24, 29, 324, 353, 372, 426, 542, 562
FalI AAGNNNNNCTT 2 cut(s) 379, 411
FatI CATG 2 cut(s) 4, 322
FblI GTMKAC 2 cut(s) 329, 352
FokI GGATG 1 cut(s) 390
FspBI CTAG 3 cut(s) 171, 185, 231
HaeIII GGCC 1 cut(s) 394
HapII CCGG 1 cut(s) 42
Hin1II CATG 2 cut(s) 8, 326
HinfI GANTC 4 cut(s) 158, 193, 234, 478
HpaII CCGG 1 cut(s) 42
HphI GGTGA 1 cut(s) 158
Hpy166II GTNNAC 2 cut(s) 330, 353
Hpy188I TCNGA 4 cut(s) 157, 432, 477, 521
Hpy8I GTNNAC 2 cut(s) 330, 353
HpyCH4IV ACGT 2 cut(s) 120, 243
HpyCH4V TGCA 3 cut(s) 4, 206, 485
HpyF3I CTNAG 1 cut(s) 518
HpySE526I ACGT 2 cut(s) 120, 243
Hsp92II CATG 2 cut(s) 8, 326
Kzo9I GATC 2 cut(s) 67, 304
LguI GCTCTTC 2 cut(s) 83, 543
LmnI GCTCC 1 cut(s) 319
LpnPI CCDG 4 cut(s) 33, 55, 147, 362
MaeI CTAG 3 cut(s) 171, 185, 231
MaeII ACGT 2 cut(s) 120, 243
MaeIII GTNAC 1 cut(s) 146
MalI GATC 2 cut(s) 69, 306
MboI GATC 2 cut(s) 67, 304
MboII GAAGA 4 cut(s) 100, 277, 280, 560
MflI RGATCY 1 cut(s) 67
MluCI AATT 5 cut(s) 57, 130, 381, 451, 533
MlyI GAGTC 1 cut(s) 152
MmeI TCCRAC 1 cut(s) 105
MnlI CCTC 5 cut(s) 43, 73, 240, 373, 540
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 4 cut(s) 74, 134, 357, 386
MspI CCGG 1 cut(s) 42
Mva1269I GAATGC 1 cut(s) 165
NdeII GATC 2 cut(s) 67, 304
NlaIII CATG 2 cut(s) 8, 326
NmuCI GTSAC 1 cut(s) 146
NsiI ATGCAT 1 cut(s) 6
PciSI GCTCTTC 2 cut(s) 83, 543
PctI GAATGC 1 cut(s) 165
PfeI GAWTC 3 cut(s) 193, 234, 478
PinAI ACCGGT 1 cut(s) 41
PleI GAGTC 1 cut(s) 152
PpsI GAGTC 1 cut(s) 152
Ppu21I YACGTR 1 cut(s) 121
PsiI TTATAA 1 cut(s) 372
PspEI GGTNACC 1 cut(s) 146
PstNI CAGNNNCTG 1 cut(s) 53
PsuI RGATCY 1 cut(s) 67
RsaI GTAC 1 cut(s) 52
RsaNI GTAC 1 cut(s) 51
SapI GCTCTTC 2 cut(s) 83, 543
SaqAI TTAA 4 cut(s) 74, 134, 357, 386
Sau3AI GATC 2 cut(s) 67, 304
SchI GAGTC 1 cut(s) 152
SetI ASST 9 cut(s) 52, 123, 246, 316, 365, 425, 439, 532, 555
SfcI CTRYAG 1 cut(s) 554
SpeI ACTAGT 1 cut(s) 184
Sse9I AATT 5 cut(s) 57, 130, 381, 451, 533
SspMI CTAG 3 cut(s) 171, 185, 231
TaiI ACGT 2 cut(s) 123, 246
TasI AATT 5 cut(s) 57, 130, 381, 451, 533
TfiI GAWTC 3 cut(s) 193, 234, 478
Tru1I TTAA 4 cut(s) 74, 134, 357, 386
Tru9I TTAA 4 cut(s) 74, 134, 357, 386
TscAI CASTG 1 cut(s) 42
TseFI GTSAC 1 cut(s) 146
Tsp45I GTSAC 1 cut(s) 146
TspDTI ATGAA 3 cut(s) 21, 101, 236
TspRI CASTG 1 cut(s) 42
XapI RAATTY 3 cut(s) 130, 381, 451
XcmI CCANNNNNNNNNTGG 1 cut(s) 158
XmiI GTMKAC 2 cut(s) 329, 352
XspI CTAG 3 cut(s) 171, 185, 231
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.