BRIGHT, ARID (A/T-rich interaction domain) domain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 710, 873 |
| AarI | CACCTGC | 1 cut(s) | 1719 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 1853, 2470 |
| AatII | GACGTC | 1 cut(s) | 143 |
| Acc36I | ACCTGC | 2 cut(s) | 1719, 1857 |
| AccB1I | GGYRCC | 1 cut(s) | 1895 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1731 |
| AccBSI | CCGCTC | 2 cut(s) | 201, 2224 |
| AccII | CGCG | 4 cut(s) | 105, 118, 226, 260 |
| AccIII | TCCGGA | 1 cut(s) | 155 |
| AclWI | GGATC | 7 cut(s) | 171, 637, 868, 997, 1045, 2596, 2663 |
| AcoI | YGGCCR | 3 cut(s) | 100, 276, 618 |
| AcsI | RAATTY | 3 cut(s) | 739, 1332, 2747 |
| AcuI | CTGAAG | 4 cut(s) | 2028, 2220, 2283, 2412 |
| AcyI | GRCGYC | 3 cut(s) | 140, 240, 2565 |
| AfaI | GTAC | 7 cut(s) | 44, 215, 416, 769, 1762, 2579, 3220 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 21, 302, 660, 661, 1731, 2302, 2561 |
| AflII | CTTAAG | 1 cut(s) | 3038 |
| AflIII | ACRYGT | 3 cut(s) | 1171, 2368, 2826 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2653 |
| AjnI | CCWGG | 9 cut(s) | 601, 655, 808, 1546, 1653, 2554, 2596, 2694, 3081 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2489, 2521 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1965, 1997 |
| Alw21I | GWGCWC | 5 cut(s) | 849, 1001, 1746, 2253, 3075 |
| Alw26I | GTCTC | 9 cut(s) | 247, 685, 810, 1617, 2053, 2083, 2304, 2870, 2962 |
| AlwI | GGATC | 7 cut(s) | 171, 637, 868, 997, 1045, 2596, 2663 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1507, 2386 |
| Aor13HI | TCCGGA | 1 cut(s) | 155 |
| AoxI | GGCC | 6 cut(s) | 3, 100, 276, 335, 618, 1432 |
| ApoI | RAATTY | 3 cut(s) | 739, 1332, 2747 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 489, 521 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 798 |
| AspLEI | GCGC | 5 cut(s) | 107, 120, 295, 2022, 2229 |
| AspS9I | GGNCC | 4 cut(s) | 170, 228, 268, 1629 |
| AsuHPI | GGTGA | 7 cut(s) | 404, 1126, 1607, 1653, 1740, 2468, 3104 |
| AsuII | TTCGAA | 1 cut(s) | 1805 |
| AsuNHI | GCTAGC | 1 cut(s) | 2521 |
| AvaII | GGWCC | 4 cut(s) | 170, 228, 268, 1629 |
| BaeGI | GKGCMC | 2 cut(s) | 931, 3209 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 759, 792 |
| BalI | TGGCCA | 1 cut(s) | 620 |
| BanI | GGYRCC | 1 cut(s) | 1895 |
| BanII | GRGCYC | 3 cut(s) | 1001, 1746, 3075 |
| BauI | CACGAG | 1 cut(s) | 2514 |
| BbsI | GAAGAC | 1 cut(s) | 575 |
| Bbv12I | GWGCWC | 5 cut(s) | 849, 1001, 1746, 2253, 3075 |
| BccI | CCATC | 6 cut(s) | 383, 941, 1693, 2579, 2680, 3114 |
| BceAI | ACGGC | 2 cut(s) | 115, 250 |
| BcgI | CGANNNNNNTGC | 1 cut(s) | 3234 |
| BciT130I | CCWGG | 9 cut(s) | 603, 657, 810, 1548, 1655, 2556, 2598, 2696, 3083 |
| BciVI | GTATCC | 1 cut(s) | 454 |
| BclI | TGATCA | 2 cut(s) | 93, 1357 |
| BcoDI | GTCTC | 9 cut(s) | 247, 685, 810, 1617, 2053, 2083, 2304, 2870, 2962 |
| BfaI | CTAG | 5 cut(s) | 983, 1637, 2522, 2535, 2700 |
| BfmI | CTRYAG | 1 cut(s) | 3138 |
| BfoI | RGCGCY | 1 cut(s) | 2230 |
| BfrI | CTTAAG | 1 cut(s) | 3038 |
| BfuAI | ACCTGC | 2 cut(s) | 1719, 1857 |
| BfuI | GTATCC | 1 cut(s) | 454 |
| BglII | AGATCT | 4 cut(s) | 693, 1266, 1690, 1718 |
| BlpI | GCTNAGC | 2 cut(s) | 133, 2230 |
| Bme1390I | CCNGG | 9 cut(s) | 603, 657, 810, 1548, 1655, 2556, 2598, 2696, 3083 |
| Bme18I | GGWCC | 4 cut(s) | 170, 228, 268, 1629 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2653 |
| BmgT120I | GGNCC | 4 cut(s) | 170, 228, 268, 1629 |
| BmiI | GGNNCC | 3 cut(s) | 172, 1630, 1897 |
| BmrFI | CCNGG | 9 cut(s) | 603, 657, 810, 1548, 1655, 2556, 2598, 2696, 3083 |
| BmtI | GCTAGC | 1 cut(s) | 2525 |
| BpiI | GAAGAC | 1 cut(s) | 575 |
| BpmI | CTGGAG | 7 cut(s) | 112, 585, 858, 1899, 2351, 2513, 2678 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1364 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 133, 2230 |
| Bpu14I | TTCGAA | 1 cut(s) | 1805 |
| BpuEI | CTTGAG | 3 cut(s) | 710, 1764, 2744 |
| BsaAI | YACGTR | 1 cut(s) | 1280 |
| BsaHI | GRCGYC | 3 cut(s) | 140, 240, 2565 |
| BsaJI | CCNNGG | 9 cut(s) | 217, 296, 516, 655, 809, 931, 2597, 2907, 3082 |
| BsaWI | WCCGGW | 1 cut(s) | 155 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 185, 215, 1180, 1210, 2486, 2516 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 21, 302, 660, 661, 1731, 2302, 2561 |
| Bse1I | ACTGG | 7 cut(s) | 422, 1021, 2296, 2334, 2391, 2421, 2496 |
| BseAI | TCCGGA | 1 cut(s) | 155 |
| BseBI | CCWGG | 9 cut(s) | 603, 657, 810, 1548, 1655, 2556, 2598, 2696, 3083 |
| BseDI | CCNNGG | 9 cut(s) | 217, 296, 516, 655, 809, 931, 2597, 2907, 3082 |
| BseGI | GGATG | 9 cut(s) | 295, 373, 943, 1103, 1556, 1830, 2551, 2691, 2986 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 21, 302, 660, 661, 1731, 2302, 2561 |
| BseMII | CTCAG | 7 cut(s) | 147, 355, 1079, 2315, 2361, 2634, 2865 |
| BseNI | ACTGG | 7 cut(s) | 422, 1021, 2296, 2334, 2391, 2421, 2496 |
| BseRI | GAGGAG | 5 cut(s) | 58, 67, 70, 2366, 2771 |
| BseSI | GKGCMC | 2 cut(s) | 931, 3209 |
| BseX3I | CGGCCG | 1 cut(s) | 100 |
| BseYI | CCCAGC | 1 cut(s) | 1784 |
| BsgI | GTGCAG | 1 cut(s) | 2202 |
| Bsh1236I | CGCG | 4 cut(s) | 105, 118, 226, 260 |
| Bsh1285I | CGRYCG | 1 cut(s) | 103 |
| BshFI | GGCC | 6 cut(s) | 5, 102, 278, 337, 620, 1434 |
| BshNI | GGYRCC | 1 cut(s) | 1895 |
| BsiEI | CGRYCG | 1 cut(s) | 103 |
| BsiHKAI | GWGCWC | 5 cut(s) | 849, 1001, 1746, 2253, 3075 |
| BsiSI | CCGG | 1 cut(s) | 156 |
| BslFI | GGGAC | 3 cut(s) | 45, 156, 1667 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 21, 302, 660, 661, 1731, 2302, 2561 |
| BsmAI | GTCTC | 9 cut(s) | 247, 685, 810, 1617, 2053, 2083, 2304, 2870, 2962 |
| BsmBI | CGTCTC | 2 cut(s) | 247, 1617 |
| BsmFI | GGGAC | 3 cut(s) | 45, 156, 1667 |
| BsmI | GAATGC | 3 cut(s) | 415, 437, 3054 |
| BsnI | GGCC | 6 cut(s) | 5, 102, 278, 337, 620, 1434 |
| Bsp119I | TTCGAA | 1 cut(s) | 1805 |
| Bsp1286I | GDGCHC | 7 cut(s) | 849, 931, 1001, 1746, 2253, 3075, 3209 |
| Bsp13I | TCCGGA | 1 cut(s) | 155 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 133, 2230 |
| Bsp19I | CCATGG | 3 cut(s) | 516, 931, 2907 |
| BspANI | GGCC | 6 cut(s) | 5, 102, 278, 337, 620, 1434 |
| BspCNI | CTCAG | 7 cut(s) | 146, 354, 1080, 2314, 2360, 2635, 2866 |
| BspEI | TCCGGA | 1 cut(s) | 155 |
| BspFNI | CGCG | 4 cut(s) | 105, 118, 226, 260 |
| BspHI | TCATGA | 1 cut(s) | 1393 |
| BspLI | GGNNCC | 3 cut(s) | 172, 1630, 1897 |
| BspMAI | CTGCAG | 1 cut(s) | 3142 |
| BspMI | ACCTGC | 2 cut(s) | 1719, 1857 |
| BspOI | GCTAGC | 1 cut(s) | 2525 |
| BspPI | GGATC | 7 cut(s) | 171, 637, 868, 997, 1045, 2596, 2663 |
| BspQI | GCTCTTC | 3 cut(s) | 837, 1344, 1734 |
| BspT104I | TTCGAA | 1 cut(s) | 1805 |
| BspT107I | GGYRCC | 1 cut(s) | 1895 |
| BspTI | CTTAAG | 1 cut(s) | 3038 |
| BsrBI | CCGCTC | 2 cut(s) | 201, 2224 |
| BsrI | ACTGG | 7 cut(s) | 422, 1021, 2296, 2334, 2391, 2421, 2496 |
| BssECI | CCNNGG | 9 cut(s) | 217, 296, 516, 655, 809, 931, 2597, 2907, 3082 |
| BssNI | GRCGYC | 3 cut(s) | 140, 240, 2565 |
| BssSI | CACGAG | 1 cut(s) | 2514 |
| BssT1I | CCWWGG | 4 cut(s) | 217, 516, 931, 2907 |
| Bst2BI | CACGAG | 1 cut(s) | 2514 |
| Bst2UI | CCWGG | 9 cut(s) | 603, 657, 810, 1548, 1655, 2556, 2598, 2696, 3083 |
| Bst6I | CTCTTC | 5 cut(s) | 837, 1344, 1461, 1734, 2259 |
| BstACI | GRCGYC | 3 cut(s) | 140, 240, 2565 |
| BstAFI | CTTAAG | 1 cut(s) | 3038 |
| BstAPI | GCANNNNNTGC | 4 cut(s) | 580, 1481, 2426, 3137 |
| BstBAI | YACGTR | 1 cut(s) | 1280 |
| BstBI | TTCGAA | 1 cut(s) | 1805 |
| BstC8I | GCNNGC | 8 cut(s) | 32, 50, 224, 816, 1246, 1756, 1875, 2523 |
| BstDSI | CCRYGG | 3 cut(s) | 516, 931, 2907 |
| BstF5I | GGATG | 9 cut(s) | 295, 373, 943, 1103, 1556, 1830, 2551, 2691, 2986 |
| BstFNI | CGCG | 4 cut(s) | 105, 118, 226, 260 |
| BstH2I | RGCGCY | 1 cut(s) | 2230 |
| BstHHI | GCGC | 5 cut(s) | 107, 120, 295, 2022, 2229 |
| BstMAI | GTCTC | 9 cut(s) | 247, 685, 810, 1617, 2053, 2083, 2304, 2870, 2962 |
| BstMCI | CGRYCG | 1 cut(s) | 103 |
| BstNI | CCWGG | 9 cut(s) | 603, 657, 810, 1548, 1655, 2556, 2598, 2696, 3083 |
| BstNSI | RCATGY | 6 cut(s) | 818, 1175, 2339, 2372, 2551, 2830 |
| BstSCI | CCNGG | 9 cut(s) | 601, 655, 808, 1546, 1653, 2554, 2596, 2694, 3081 |
| BstSFI | CTRYAG | 1 cut(s) | 3138 |
| BstSLI | GKGCMC | 2 cut(s) | 931, 3209 |
| BstUI | CGCG | 4 cut(s) | 105, 118, 226, 260 |
| BstV2I | GAAGAC | 1 cut(s) | 575 |
| BstX2I | RGATCY | 5 cut(s) | 693, 1037, 1266, 1690, 1718 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 502, 3089 |
| BstYI | RGATCY | 5 cut(s) | 693, 1037, 1266, 1690, 1718 |
| BstZI | CGGCCG | 1 cut(s) | 100 |
| BsuI | GTATCC | 1 cut(s) | 454 |
| BsuRI | GGCC | 6 cut(s) | 5, 102, 278, 337, 620, 1434 |
| BtgI | CCRYGG | 3 cut(s) | 516, 931, 2907 |
| BtgZI | GCGATG | 1 cut(s) | 2121 |
| BtsCI | GGATG | 9 cut(s) | 295, 373, 943, 1103, 1556, 1830, 2551, 2691, 2986 |
| BtsIMutI | CAGTG | 5 cut(s) | 534, 908, 1804, 2108, 2947 |
| BveI | ACCTGC | 2 cut(s) | 1719, 1857 |
| Cac8I | GCNNGC | 8 cut(s) | 32, 50, 224, 816, 1246, 1756, 1875, 2523 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1507, 2386 |
| CciI | TCATGA | 1 cut(s) | 1393 |
| CfoI | GCGC | 5 cut(s) | 107, 120, 295, 2022, 2229 |
| Cfr13I | GGNCC | 4 cut(s) | 170, 228, 268, 1629 |
| CseI | GACGC | 3 cut(s) | 229, 580, 2554 |
| Csp6I | GTAC | 7 cut(s) | 43, 214, 415, 768, 1761, 2578, 3219 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2014, 2049 |
| CviQI | GTAC | 7 cut(s) | 43, 214, 415, 768, 1761, 2578, 3219 |
| DraI | TTTAAA | 2 cut(s) | 1413, 2929 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 1853, 2470 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2653 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 1853, 2470 |
| EaeI | YGGCCR | 3 cut(s) | 100, 276, 618 |
| EagI | CGGCCG | 1 cut(s) | 100 |
| Eam1104I | CTCTTC | 5 cut(s) | 837, 1344, 1461, 1734, 2259 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2653 |
| EarI | CTCTTC | 5 cut(s) | 837, 1344, 1461, 1734, 2259 |
| EciI | GGCGGA | 2 cut(s) | 169, 278 |
| Ecl136II | GAGCTC | 3 cut(s) | 999, 1744, 3073 |
| EclXI | CGGCCG | 1 cut(s) | 100 |
| Eco130I | CCWWGG | 4 cut(s) | 217, 516, 931, 2907 |
| Eco24I | GRGCYC | 3 cut(s) | 1001, 1746, 3075 |
| Eco32I | GATATC | 1 cut(s) | 1981 |
| Eco47I | GGWCC | 4 cut(s) | 170, 228, 268, 1629 |
| Eco52I | CGGCCG | 1 cut(s) | 100 |
| Eco53kI | GAGCTC | 3 cut(s) | 999, 1744, 3073 |
| Eco57I | CTGAAG | 4 cut(s) | 2028, 2220, 2283, 2412 |
| EcoICRI | GAGCTC | 3 cut(s) | 999, 1744, 3073 |
| EcoO109I | RGGNCCY | 2 cut(s) | 268, 1629 |
| EcoRII | CCWGG | 9 cut(s) | 601, 655, 808, 1546, 1653, 2554, 2596, 2694, 3081 |
| EcoRV | GATATC | 1 cut(s) | 1981 |
| EcoT14I | CCWWGG | 4 cut(s) | 217, 516, 931, 2907 |
| EcoT22I | ATGCAT | 3 cut(s) | 439, 585, 2553 |
| EcoT38I | GRGCYC | 3 cut(s) | 1001, 1746, 3075 |
| ErhI | CCWWGG | 4 cut(s) | 217, 516, 931, 2907 |
| Esp3I | CGTCTC | 2 cut(s) | 247, 1617 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1338, 1370, 2598, 2630 |
| FaqI | GGGAC | 3 cut(s) | 45, 156, 1667 |
| FauI | CCCGC | 2 cut(s) | 206, 1145 |
| FauNDI | CATATG | 1 cut(s) | 772 |
| FbaI | TGATCA | 2 cut(s) | 93, 1357 |
| FokI | GGATG | 9 cut(s) | 302, 380, 950, 1090, 1563, 1837, 2538, 2698, 2993 |
| FriOI | GRGCYC | 3 cut(s) | 1001, 1746, 3075 |
| FspBI | CTAG | 5 cut(s) | 983, 1637, 2522, 2535, 2700 |
| GlaI | GCGC | 5 cut(s) | 106, 119, 294, 2021, 2228 |
| GsaI | CCCAGC | 1 cut(s) | 1788 |
| GsuI | CTGGAG | 7 cut(s) | 112, 585, 858, 1899, 2351, 2513, 2678 |
| HaeII | RGCGCY | 1 cut(s) | 2230 |
| HaeIII | GGCC | 6 cut(s) | 5, 102, 278, 337, 620, 1434 |
| HapII | CCGG | 1 cut(s) | 156 |
| HgaI | GACGC | 3 cut(s) | 229, 580, 2554 |
| HhaI | GCGC | 5 cut(s) | 107, 120, 295, 2022, 2229 |
| Hin1I | GRCGYC | 3 cut(s) | 140, 240, 2565 |
| Hin6I | GCGC | 5 cut(s) | 105, 118, 293, 2020, 2227 |
| HinP1I | GCGC | 5 cut(s) | 105, 118, 293, 2020, 2227 |
| HincII | GTYRAC | 1 cut(s) | 2569 |
| HindII | GTYRAC | 1 cut(s) | 2569 |
| HindIII | AAGCTT | 1 cut(s) | 2397 |
| HpaII | CCGG | 1 cut(s) | 156 |
| HphI | GGTGA | 7 cut(s) | 404, 1126, 1607, 1653, 1740, 2468, 3104 |
| Hpy166II | GTNNAC | 3 cut(s) | 164, 2569, 3188 |
| Hpy8I | GTNNAC | 3 cut(s) | 164, 2569, 3188 |
| Hpy99I | CGWCG | 4 cut(s) | 142, 145, 1584, 3036 |
| HpyCH4IV | ACGT | 4 cut(s) | 140, 1279, 1582, 1975 |
| HpySE526I | ACGT | 4 cut(s) | 140, 1279, 1582, 1975 |
| Hsp92I | GRCGYC | 3 cut(s) | 140, 240, 2565 |
| HspAI | GCGC | 5 cut(s) | 105, 118, 293, 2020, 2227 |
| Kpn2I | TCCGGA | 1 cut(s) | 155 |
| Ksp22I | TGATCA | 2 cut(s) | 93, 1357 |
| LguI | GCTCTTC | 3 cut(s) | 837, 1344, 1734 |
| LmnI | GCTCC | 9 cut(s) | 24, 125, 131, 206, 604, 1921, 1952, 2332, 2864 |
| MaeI | CTAG | 5 cut(s) | 983, 1637, 2522, 2535, 2700 |
| MaeII | ACGT | 4 cut(s) | 140, 1279, 1582, 1975 |
| MaeIII | GTNAC | 8 cut(s) | 319, 373, 424, 553, 893, 1192, 2364, 2461 |
| MbiI | CCGCTC | 2 cut(s) | 201, 2224 |
| MflI | RGATCY | 5 cut(s) | 693, 1037, 1266, 1690, 1718 |
| MhlI | GDGCHC | 7 cut(s) | 849, 931, 1001, 1746, 2253, 3075, 3209 |
| MlsI | TGGCCA | 1 cut(s) | 620 |
| MluNI | TGGCCA | 1 cut(s) | 620 |
| MlyI | GAGTC | 3 cut(s) | 159, 1652, 2663 |
| MmeI | TCCRAC | 4 cut(s) | 838, 1404, 2106, 2958 |
| Mox20I | TGGCCA | 1 cut(s) | 620 |
| Mph1103I | ATGCAT | 3 cut(s) | 439, 585, 2553 |
| MroI | TCCGGA | 1 cut(s) | 155 |
| MroXI | GAANNNNTTC | 1 cut(s) | 798 |
| MscI | TGGCCA | 1 cut(s) | 620 |
| MslI | CAYNNNNRTG | 4 cut(s) | 852, 936, 1170, 2901 |
| Msp20I | TGGCCA | 1 cut(s) | 620 |
| MspA1I | CMGCKG | 1 cut(s) | 1754 |
| MspCI | CTTAAG | 1 cut(s) | 3038 |
| MspI | CCGG | 1 cut(s) | 156 |
| MspR9I | CCNGG | 9 cut(s) | 603, 657, 810, 1548, 1655, 2556, 2598, 2696, 3083 |
| Mva1269I | GAATGC | 3 cut(s) | 415, 437, 3054 |
| MvaI | CCWGG | 9 cut(s) | 603, 657, 810, 1548, 1655, 2556, 2598, 2696, 3083 |
| MvnI | CGCG | 4 cut(s) | 105, 118, 226, 260 |
| NcoI | CCATGG | 3 cut(s) | 516, 931, 2907 |
| NdeI | CATATG | 1 cut(s) | 772 |
| NheI | GCTAGC | 1 cut(s) | 2521 |
| NlaIV | GGNNCC | 3 cut(s) | 172, 1630, 1897 |
| NmeAIII | GCCGAG | 3 cut(s) | 213, 304, 321 |
| NmuCI | GTSAC | 5 cut(s) | 319, 373, 553, 893, 2461 |
| NsiI | ATGCAT | 3 cut(s) | 439, 585, 2553 |
| NspI | RCATGY | 6 cut(s) | 818, 1175, 2339, 2372, 2551, 2830 |
| NspV | TTCGAA | 1 cut(s) | 1805 |
| PacI | TTAATTAA | 1 cut(s) | 1314 |
| PaeI | GCATGC | 1 cut(s) | 818 |
| PagI | TCATGA | 1 cut(s) | 1393 |
| PaqCI | CACCTGC | 1 cut(s) | 1719 |
| PciI | ACATGT | 3 cut(s) | 1171, 2368, 2826 |
| PciSI | GCTCTTC | 3 cut(s) | 837, 1344, 1734 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 38 |
| PctI | GAATGC | 3 cut(s) | 415, 437, 3054 |
| PdmI | GAANNNNTTC | 1 cut(s) | 798 |
| PfeI | GAWTC | 8 cut(s) | 206, 325, 758, 1124, 1497, 1772, 2212, 2662 |
| PflFI | GACNNNGTC | 1 cut(s) | 168 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1731 |
| PleI | GAGTC | 3 cut(s) | 159, 1652, 2662 |
| PpsI | GAGTC | 3 cut(s) | 159, 1652, 2662 |
| Ppu21I | YACGTR | 1 cut(s) | 1280 |
| PpuMI | RGGWCCY | 2 cut(s) | 268, 1629 |
| PscI | ACATGT | 3 cut(s) | 1171, 2368, 2826 |
| PsiI | TTATAA | 2 cut(s) | 710, 873 |
| Psp124BI | GAGCTC | 3 cut(s) | 1001, 1746, 3075 |
| Psp5II | RGGWCCY | 2 cut(s) | 268, 1629 |
| Psp6I | CCWGG | 9 cut(s) | 601, 655, 808, 1546, 1653, 2554, 2596, 2694, 3081 |
| PspFI | CCCAGC | 1 cut(s) | 1784 |
| PspGI | CCWGG | 9 cut(s) | 601, 655, 808, 1546, 1653, 2554, 2596, 2694, 3081 |
| PspN4I | GGNNCC | 3 cut(s) | 172, 1630, 1897 |
| PspPI | GGNCC | 4 cut(s) | 170, 228, 268, 1629 |
| PspPPI | RGGWCCY | 2 cut(s) | 268, 1629 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 3169, 3201 |
| PstI | CTGCAG | 1 cut(s) | 3142 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1507, 2386 |
| PsuI | RGATCY | 5 cut(s) | 693, 1037, 1266, 1690, 1718 |
| PsyI | GACNNNGTC | 1 cut(s) | 168 |
| PvuII | CAGCTG | 1 cut(s) | 1754 |
| RsaI | GTAC | 7 cut(s) | 44, 215, 416, 769, 1762, 2579, 3220 |
| RsaNI | GTAC | 7 cut(s) | 43, 214, 415, 768, 1761, 2578, 3219 |
| RseI | CAYNNNNRTG | 4 cut(s) | 852, 936, 1170, 2901 |
| SacI | GAGCTC | 3 cut(s) | 1001, 1746, 3075 |
| SapI | GCTCTTC | 3 cut(s) | 837, 1344, 1734 |
| Sau96I | GGNCC | 4 cut(s) | 170, 228, 268, 1629 |
| SchI | GAGTC | 3 cut(s) | 159, 1652, 2663 |
| ScrFI | CCNGG | 9 cut(s) | 603, 657, 810, 1548, 1655, 2556, 2598, 2696, 3083 |
| SduI | GDGCHC | 7 cut(s) | 849, 931, 1001, 1746, 2253, 3075, 3209 |
| SfcI | CTRYAG | 1 cut(s) | 3138 |
| SfuI | TTCGAA | 1 cut(s) | 1805 |
| SinI | GGWCC | 4 cut(s) | 170, 228, 268, 1629 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 852, 936, 1170, 2901 |
| SmlI | CTYRAG | 4 cut(s) | 689, 1779, 2723, 3038 |
| SmoI | CTYRAG | 4 cut(s) | 689, 1779, 2723, 3038 |
| SphI | GCATGC | 1 cut(s) | 818 |
| SspMI | CTAG | 5 cut(s) | 983, 1637, 2522, 2535, 2700 |
| SstI | GAGCTC | 3 cut(s) | 1001, 1746, 3075 |
| StyD4I | CCNGG | 9 cut(s) | 601, 655, 808, 1546, 1653, 2554, 2596, 2694, 3081 |
| StyI | CCWWGG | 4 cut(s) | 217, 516, 931, 2907 |
| TaiI | ACGT | 4 cut(s) | 143, 1282, 1585, 1978 |
| TaqI | TCGA | 6 cut(s) | 71, 441, 1120, 1805, 1857, 3046 |
| TaqII | GACCGA | 2 cut(s) | 158, 307 |
| TatI | WGTACW | 2 cut(s) | 1760, 2577 |
| TauI | GCSGC | 4 cut(s) | 105, 240, 263, 2227 |
| TfiI | GAWTC | 8 cut(s) | 206, 325, 758, 1124, 1497, 1772, 2212, 2662 |
| TscAI | CASTG | 5 cut(s) | 541, 915, 1804, 2108, 2947 |
| TseFI | GTSAC | 5 cut(s) | 319, 373, 553, 893, 2461 |
| Tsp45I | GTSAC | 5 cut(s) | 319, 373, 553, 893, 2461 |
| TspGWI | ACGGA | 1 cut(s) | 1625 |
| TspRI | CASTG | 5 cut(s) | 541, 915, 1804, 2108, 2947 |
| Tth111I | GACNNNGTC | 1 cut(s) | 168 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1731 |
| Vha464I | CTTAAG | 1 cut(s) | 3038 |
| VpaK11BI | GGWCC | 4 cut(s) | 170, 228, 268, 1629 |
| XapI | RAATTY | 3 cut(s) | 739, 1332, 2747 |
| XbaI | TCTAGA | 1 cut(s) | 2534 |
| XceI | RCATGY | 6 cut(s) | 818, 1175, 2339, 2372, 2551, 2830 |
| XmnI | GAANNNNTTC | 1 cut(s) | 798 |
| XspI | CTAG | 5 cut(s) | 983, 1637, 2522, 2535, 2700 |
| ZraI | GACGTC | 1 cut(s) | 141 |
| Zsp2I | ATGCAT | 3 cut(s) | 439, 585, 2553 |