Rmu_sc0002489.1_g000048

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002489.1
OG0000165
Physical Location & Seq
Forward (+)
153520 .. 155007
1488 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002489.1_g000048.1.cds

Sequence Viewer

Length: 1488 bp
atgccaacagtaagtaacgtagaagatgatcaagaacacaacaagacaattgatttgggaaaagattcaatgattgtgaatcgtcaagccagtaataatgacaacttgtatggagtaattgtcaatagtgaggaagaagcatacaacctctactatgagtatggtgccagaatggggtttagtgttcggataatgcagaggaggaaaaccaacaacgttgtgagacaagttaattatgcctattcaaaagaaggttttaaactagatagtgatccttcagaagtgaaaaaggctgataggttggacactagaactggctgcacagcaaaaattctatttggattgcaagataataatgtatggaaagcaactctctttgttcctgatcacaaccacaaacttgcaaagccagaagaaagaccatttttgcgctccaatcgaaaagtgttagaatctcataagggggtgattagatcaatgaaaagcgcaggtatgagtaccataaatacatattcatatttagcagaagaagttgggggatctcaaactgttggatttacaaagactaattgttacaattttgtaagcagagagaaaatgattatgctagaagcaggggatgctcaaagcttgatcaatttattcaagaaaaagaaaattgaagatcctatgtttttctacactgtgcaagtggatcaagaaaatcgaatgacaaactttttctggagagatggaaagtcgaaaaccgactttgaatgctttggggacgttatagtatttgatactacttaccggaccaataaatataacatgatttgtgctcctttcgttggggttaaccaccattggaaaaatgtgttgtttggttgtgcatttttgctagatgagacgactgcttcatttatttggttatttgagacattcttagaagcaatggaaggtaaaaaaccaaagactatttttactgatcgatgtcaggcaatggcaaatgcaattgagaaggtttttcctgagacacgccatcagttatgtttgtggcacatatcaaagaatgcggtacaaaacttgaattgtctttatagaaatcctgatttcagtgagcttttcaagaagtttctttttggacgtgtgacagaagatgaatttgagtctacttggaatgaaataatagagaagtttgatcttgaagggaacacatggctcaagacactttatgaccttcgtgaaaaatggtgtgcattatttagtaaagatacattctctgcaggaaaattatctccacaaagaagtgagagcacaaataatgtgtttactctcatgtctactaaaacactgaattttactgaatttgtgcatcattatgataaacaggcagaacaaatgagttcaagtgaattggaagagacttttcggtgcaataacggaatacctactagggctgcaagaagtagtggaattaagaagcaagctggtatggtctacacctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE PEARLI-4 SWIM

Protein Analysis

495

Amino Acids

57.33

Weight (kDa)

7.54

Isoelectric Point (pI)

42.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000165)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38180
fragaria_vesca FvH4_1g09751 FvH4_1g09751 FvH4_1g09751 FvH4_1g12531 FvH4_1g19193 FvH4_2g07051 FvH4_2g17131 FvH4_2g17131 FvH4_2g28082 FvH4_5g08845 FvH4_5g26361 FvH4_5g26361 FvH4_5g26361 FvH4_5g26361 FvH4_5g39269 FvH4_6g36651 FvH4_6g38410 FvH4_7g04941 FvH4_7g04941
malus_domestica MD00G1156400.v1.1 MD02G1139600.v1.1 MD05G1144600.v1.1 MD06G1002400.v1.1 MD10G1143900.v1.1 MD15G1227300.v1.1 MD15G1252700.v1.1
prunus_persica Prupe.2G147900_v2.0.a1 Prupe.3G257900_v2.0.a1 Prupe.5G003600_v2.0.a1 Prupe.5G053800_v2.0.a1 Prupe.6G011300_v2.0.a1 Prupe.7G161400_v2.0.a1 Prupe.7G161500_v2.0.a1 Prupe.7G188000_v2.0.a1 Prupe.8G182700_v2.0.a1 Prupe.8G182700_v2.0.a1 Prupe.8G182700_v2.0.a1
pyrus_communis pycom02g11030 pycom05g13970 pycom06g00250 pycom10g12390 pycom10g12400 pycom15g20220 pycom15g22260 pycom17g05620
rosa_chinensis RchiOBHm_Chr2g0096701 RchiOBHm_Chr2g0100471 RchiOBHm_Chr2g0100481 RchiOBHm_Chr6g0281561 RchiOBHm_Chr7g0187081 RchiOBHm_Chr7g0217201 RchiOBHm_Chr7g0228321
rosa_laevigata RLG00000001574 RLG00000002527 RLG00000008169 RLG00000011104 RLG00000012963 RLG00000013720 RLG00000014615 RLG00000016663 RLG00000018214 RLG00000018621 RLG00000018622 RLG00000022494
rosa_multiflora Rmu_co8187762.1_g000001 Rmu_co8276569.1_g000001 Rmu_sc0000528.1_g000025 Rmu_sc0001095.1_g000001 Rmu_sc0001095.1_g000002 Rmu_sc0001167.1_g000007 Rmu_sc0001758.1_g000042 Rmu_sc0002147.1_g000004 Rmu_sc0002489.1_g000048 Rmu_sc0002564.1_g000015 Rmu_sc0002902.1_g000037 Rmu_sc0003565.1_g000022 Rmu_sc0003576.1_g000008 Rmu_sc0003720.1_g000022 Rmu_sc0003720.1_g000023 Rmu_sc0003862.1_g000023 Rmu_sc0006475.1_g000009 Rmu_sc0006475.1_g000010 Rmu_sc0006735.1_g000001 Rmu_sc0007586.1_g000004 Rmu_sc0009650.1_g000010 Rmu_sc0010963.1_g000005 Rmu_sc0012557.1_g000002 Rmu_sc0020744.1_g000001 Rmu_sc0020745.1_g000002 Rmu_sc0022201.1_g000001 Rmu_sc0022408.1_g000011 Rmu_sc0023414.1_g000001 Rmu_sc0025101.1_g000001 Rmu_ssc0000211.1_g000015 Rmu_ssc0000240.1_g000012
rosa_roxburghii Rroxscaffold_1G00013940 Rroxscaffold_1G00018420 Rroxscaffold_2G00142210 Rroxscaffold_2G00142230 Rroxscaffold_2G00145400 Rroxscaffold_3G00240120 Rroxscaffold_3G00240150 Rroxscaffold_3G00242500 Rroxscaffold_5G00346610 Rroxscaffold_5G00356000 Rroxscaffold_7G00187000 Rroxscaffold_7G00212120
rosa_rugosa Rorug01G0260900 Rorug01G0446900 Rorug02G0059800 Rorug02G0059900 Rorug02G0088400 Rorug02G0088500 Rorug02G0522300 Rorug03G0234100 Rorug03G0234100 Rorug03G0242400 Rorug04G0109900 Rorug04G0326100 Rorug05G0275900 Rorug06G0141600 Rorug06G0141700 Rorug06G0141700 Rorug07G0167200 Rorug07G0247000 Rorug07G0247000 Rorug07G0247100.1
rosa_samantha Rh1AG046800 Rh1AG111600 Rh1AG242600 Rh1CG226400 Rh1DG086400 Rh2AG107200 Rh2AG138100 Rh2AG528600 Rh2BG109600 Rh2BG141200 Rh2BG273400 Rh2BG357800 Rh2BG640200 Rh2CG111400 Rh2CG143400 Rh2CG161100 Rh2CG251300 Rh2DG111000 Rh2DG142900 Rh2DG651100 Rh3BG318000 Rh4AG167800 Rh4AG253700 Rh5AG282900 Rh6AG254100 Rh6BG257100 Rh6CG256400 Rh6DG248200 Rh7AG306100 Rh7BG297500 Rh7CG325200 Rh7CG420200 Rh7DG306000
rosa_wichuraiana Rw2G008310 Rw2G010790 Rw2G010800 Rw2G013840 Rw2G022430 Rw3G020550 Rw3G024980 Rw3G025930 Rw5G026810 Rw5G035870 Rw6G022060 Rw6G030700 Rw7G007420 Rw7G026010 Rw7G033340 Rw7G037700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 479
AccB1I GGYRCC 1 cut(s) 164
AccI GTMKAC 3 cut(s) 1151, 1322, 1479
AciI CCGC 1 cut(s) 1055
AclI AACGTT 1 cut(s) 216
AclWI GGATC 4 cut(s) 266, 547, 659, 702
AcsI RAATTY 4 cut(s) 330, 1142, 1336, 1346
AcuI CTGAAG 1 cut(s) 261
AfaI GTAC 2 cut(s) 499, 1059
AfiI CCNNNNNNNGG 2 cut(s) 174, 830
AflIII ACRYGT 1 cut(s) 1126
AgsI TTSAA 9 cut(s) 69, 246, 646, 662, 755, 1069, 1108, 1187, 1389
AjiI CACGTC 1 cut(s) 1127
AluBI AGCT 3 cut(s) 630, 1102, 1469
AluI AGCT 3 cut(s) 630, 1102, 1469
Alw21I GWGCWC 2 cut(s) 823, 1298
Alw26I GTCTC 5 cut(s) 217, 881, 911, 1007, 1397
AlwI GGATC 4 cut(s) 266, 547, 659, 702
ApeKI GCWGC 2 cut(s) 318, 1439
ApoI RAATTY 4 cut(s) 330, 1142, 1336, 1346
ArsI GACNNNNNNTTYG 2 cut(s) 37, 69
Asp700I GAANNNNTTC 1 cut(s) 64
AspLEI GCGC 2 cut(s) 432, 488
AspS9I GGNCC 1 cut(s) 795
AsuHPI GGTGA 1 cut(s) 478
AvaII GGWCC 1 cut(s) 795
BanI GGYRCC 1 cut(s) 164
Bbv12I GWGCWC 2 cut(s) 823, 1298
BbvI GCAGC 2 cut(s) 305, 1426
BccI CCATC 2 cut(s) 725, 1029
BclI TGATCA 3 cut(s) 28, 385, 633
BcoDI GTCTC 5 cut(s) 217, 881, 911, 1007, 1397
BfaI CTAG 5 cut(s) 263, 309, 608, 881, 1434
BfmI CTRYAG 1 cut(s) 1263
BfuAI ACCTGC 1 cut(s) 479
BisI GCNGC 2 cut(s) 319, 1440
BlsI GCNGC 2 cut(s) 320, 1441
Bme18I GGWCC 1 cut(s) 795
BmgBI CACGTC 1 cut(s) 1127
BmgT120I GGNCC 1 cut(s) 795
BmiI GGNNCC 1 cut(s) 166
BmsI GCATC 2 cut(s) 610, 1363
BpmI CTGGAG 1 cut(s) 745
BpuEI CTTGAG 1 cut(s) 1187
Bsa29I ATCGAT 1 cut(s) 970
BsaBI GATNNNNATC 1 cut(s) 270
BsaWI WCCGGW 1 cut(s) 792
BsaXI ACNNNNNCTCC 2 cut(s) 105, 135
Bsc4I CCNNNNNNNGG 2 cut(s) 174, 830
Bse1I ACTGG 2 cut(s) 90, 319
Bse3DI GCAATG 2 cut(s) 939, 987
Bse8I GATNNNNATC 1 cut(s) 270
BseCI ATCGAT 1 cut(s) 970
BseGI GGATG 1 cut(s) 625
BseJI GATNNNNATC 1 cut(s) 270
BseLI CCNNNNNNNGG 2 cut(s) 174, 830
BseMI GCAATG 2 cut(s) 939, 987
BseMII CTCAG 1 cut(s) 1002
BseNI ACTGG 2 cut(s) 90, 319
BseRI GAGGAG 1 cut(s) 214
BseXI GCAGC 2 cut(s) 305, 1426
BsgI GTGCAG 1 cut(s) 304
BshNI GGYRCC 1 cut(s) 164
BshVI ATCGAT 1 cut(s) 970
BsiHKAI GWGCWC 2 cut(s) 823, 1298
BsiSI CCGG 1 cut(s) 793
BslFI GGGAC 1 cut(s) 779
BslI CCNNNNNNNGG 2 cut(s) 174, 830
BsmAI GTCTC 5 cut(s) 217, 881, 911, 1007, 1397
BsmBI CGTCTC 1 cut(s) 881
BsmFI GGGAC 1 cut(s) 779
BsmI GAATGC 2 cut(s) 761, 1057
Bsp1286I GDGCHC 2 cut(s) 823, 1298
BspACI CCGC 1 cut(s) 1055
BspCNI CTCAG 1 cut(s) 1003
BspDI ATCGAT 1 cut(s) 970
BspLI GGNNCC 1 cut(s) 166
BspMAI CTGCAG 1 cut(s) 1267
BspMI ACCTGC 1 cut(s) 479
BspPI GGATC 4 cut(s) 266, 547, 659, 702
BspT107I GGYRCC 1 cut(s) 164
BsrDI GCAATG 2 cut(s) 939, 987
BsrI ACTGG 2 cut(s) 90, 319
Bst4CI ACNGT 3 cut(s) 10, 550, 685
Bst6I CTCTTC 1 cut(s) 1395
BstAPI GCANNNNNTGC 1 cut(s) 620
BstC8I GCNNGC 1 cut(s) 1467
BstDEI CTNAG 2 cut(s) 925, 1011
BstF5I GGATG 1 cut(s) 625
BstHHI GCGC 2 cut(s) 432, 488
BstMAI GTCTC 5 cut(s) 217, 881, 911, 1007, 1397
BstMWI GCNNNNNNNGC 1 cut(s) 620
BstSFI CTRYAG 1 cut(s) 1263
BstV1I GCAGC 2 cut(s) 305, 1426
BstX2I RGATCY 2 cut(s) 539, 664
BstYI RGATCY 2 cut(s) 539, 664
Bsu15I ATCGAT 1 cut(s) 970
BsuTUI ATCGAT 1 cut(s) 970
BtrI CACGTC 1 cut(s) 1127
BtsCI GGATG 1 cut(s) 625
BtsIMutI CAGTG 3 cut(s) 681, 1102, 1331
BveI ACCTGC 1 cut(s) 479
Cac8I GCNNGC 1 cut(s) 1467
CfoI GCGC 2 cut(s) 432, 488
Cfr13I GGNCC 1 cut(s) 795
ClaI ATCGAT 1 cut(s) 970
Csp6I GTAC 2 cut(s) 498, 1058
CviAII CATG 3 cut(s) 811, 1197, 1318
CviJI RGCY 9 cut(s) 89, 293, 318, 409, 630, 1102, 1201, 1439, 1469
CviKI_1 RGCY 9 cut(s) 89, 293, 318, 409, 630, 1102, 1201, 1439, 1469
CviQI GTAC 2 cut(s) 498, 1058
DdeI CTNAG 2 cut(s) 925, 1011
DraI TTTAAA 1 cut(s) 259
Eam1104I CTCTTC 1 cut(s) 1395
EarI CTCTTC 1 cut(s) 1395
Eco47I GGWCC 1 cut(s) 795
Eco57I CTGAAG 1 cut(s) 261
Esp3I CGTCTC 1 cut(s) 881
FaeI CATG 3 cut(s) 814, 1200, 1321
FaqI GGGAC 1 cut(s) 779
FatI CATG 3 cut(s) 810, 1196, 1317
FbaI TGATCA 3 cut(s) 28, 385, 633
FblI GTMKAC 3 cut(s) 1151, 1322, 1479
Fnu4HI GCNGC 2 cut(s) 319, 1440
FokI GGATG 1 cut(s) 632
Fsp4HI GCNGC 2 cut(s) 319, 1440
FspBI CTAG 5 cut(s) 263, 309, 608, 881, 1434
GlaI GCGC 2 cut(s) 431, 487
GluI GCNGC 2 cut(s) 319, 1440
GsuI CTGGAG 1 cut(s) 745
HapII CCGG 1 cut(s) 793
HhaI GCGC 2 cut(s) 432, 488
Hin1II CATG 3 cut(s) 814, 1200, 1321
Hin6I GCGC 2 cut(s) 430, 486
HinP1I GCGC 2 cut(s) 430, 486
HincII GTYRAC 1 cut(s) 838
HindII GTYRAC 1 cut(s) 838
HindIII AAGCTT 1 cut(s) 628
HinfI GANTC 4 cut(s) 65, 79, 452, 1148
HpaI GTTAAC 1 cut(s) 838
HpaII CCGG 1 cut(s) 793
HphI GGTGA 1 cut(s) 478
Hpy166II GTNNAC 5 cut(s) 838, 1152, 1311, 1323, 1480
Hpy188I TCNGA 2 cut(s) 189, 280
Hpy8I GTNNAC 5 cut(s) 838, 1152, 1311, 1323, 1480
HpyAV CCTTC 6 cut(s) 245, 285, 932, 994, 1181, 1229
HpyCH4III ACNGT 3 cut(s) 10, 550, 685
HpyCH4IV ACGT 4 cut(s) 18, 216, 768, 1126
HpyF10VI GCNNNNNNNGC 1 cut(s) 620
HpyF3I CTNAG 2 cut(s) 925, 1011
HpySE526I ACGT 4 cut(s) 18, 216, 768, 1126
Hsp92II CATG 3 cut(s) 814, 1200, 1321
HspAI GCGC 2 cut(s) 430, 486
Ksp22I TGATCA 3 cut(s) 28, 385, 633
KspAI GTTAAC 1 cut(s) 838
LmnI GCTCC 2 cut(s) 437, 826
Lsp1109I GCAGC 2 cut(s) 305, 1426
LweI GCATC 2 cut(s) 610, 1363
MaeI CTAG 5 cut(s) 263, 309, 608, 881, 1434
MaeII ACGT 4 cut(s) 18, 216, 768, 1126
MaeIII GTNAC 3 cut(s) 14, 572, 1129
MboII GAAGA 7 cut(s) 35, 146, 425, 539, 674, 1148, 1412
MfeI CAATTG 2 cut(s) 48, 993
MflI RGATCY 2 cut(s) 539, 664
MhlI GDGCHC 2 cut(s) 823, 1298
MlyI GAGTC 1 cut(s) 1157
MmeI TCCRAC 2 cut(s) 282, 532
MnlI CCTC 4 cut(s) 124, 158, 192, 195
MroXI GAANNNNTTC 1 cut(s) 64
MseI TTAA 4 cut(s) 231, 258, 837, 1458
MslI CAYNNNNRTG 1 cut(s) 1359
MspI CCGG 1 cut(s) 793
MunI CAATTG 2 cut(s) 48, 993
Mva1269I GAATGC 2 cut(s) 761, 1057
MwoI GCNNNNNNNGC 1 cut(s) 620
NlaIII CATG 3 cut(s) 814, 1200, 1321
NlaIV GGNNCC 1 cut(s) 166
NmuCI GTSAC 1 cut(s) 1129
PctI GAATGC 2 cut(s) 761, 1057
PdmI GAANNNNTTC 1 cut(s) 64
PfeI GAWTC 3 cut(s) 65, 79, 452
PkrI GCNGC 2 cut(s) 320, 1441
PleI GAGTC 1 cut(s) 1156
PpsI GAGTC 1 cut(s) 1156
Psp1406I AACGTT 1 cut(s) 216
PspN4I GGNNCC 1 cut(s) 166
PspPI GGNCC 1 cut(s) 795
PstI CTGCAG 1 cut(s) 1267
PsuI RGATCY 2 cut(s) 539, 664
RsaI GTAC 2 cut(s) 499, 1059
RsaNI GTAC 2 cut(s) 498, 1058
RseI CAYNNNNRTG 1 cut(s) 1359
SaqAI TTAA 4 cut(s) 231, 258, 837, 1458
SatI GCNGC 2 cut(s) 319, 1440
Sau96I GGNCC 1 cut(s) 795
SchI GAGTC 1 cut(s) 1157
SduI GDGCHC 2 cut(s) 823, 1298
SfaNI GCATC 2 cut(s) 610, 1363
SfcI CTRYAG 1 cut(s) 1263
SinI GGWCC 1 cut(s) 795
SmiMI CAYNNNNRTG 1 cut(s) 1359
SmlI CTYRAG 1 cut(s) 1202
SmoI CTYRAG 1 cut(s) 1202
SsiI CCGC 1 cut(s) 1055
SspMI CTAG 5 cut(s) 263, 309, 608, 881, 1434
TaaI ACNGT 3 cut(s) 10, 550, 685
TaiI ACGT 4 cut(s) 21, 219, 771, 1129
TaqI TCGA 4 cut(s) 439, 706, 740, 970
TfiI GAWTC 3 cut(s) 65, 79, 452
Tru1I TTAA 4 cut(s) 231, 258, 837, 1458
Tru9I TTAA 4 cut(s) 231, 258, 837, 1458
TscAI CASTG 3 cut(s) 688, 1102, 1338
TseFI GTSAC 1 cut(s) 1129
TseI GCWGC 2 cut(s) 318, 1439
Tsp45I GTSAC 1 cut(s) 1129
TspDTI ATGAA 5 cut(s) 494, 504, 888, 1155, 1176
TspGWI ACGGA 1 cut(s) 1437
TspRI CASTG 3 cut(s) 688, 1102, 1338
VpaK11BI GGWCC 1 cut(s) 795
XapI RAATTY 4 cut(s) 330, 1142, 1336, 1346
XmiI GTMKAC 3 cut(s) 1151, 1322, 1479
XmnI GAANNNNTTC 1 cut(s) 64
XspI CTAG 5 cut(s) 263, 309, 608, 881, 1434
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.