Rh2BG141200

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000165
Physical Location & Seq
Reverse (-)
12118671 .. 12126752
8082 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG141200.1

Sequence Viewer

Length: 879 bp
ATGTTAGAAAATGGTGATGAGGGATATCAGTTTGGAGATTGTGAGGAGCTAAAACTAGGGATGGAGGTGTCTAGTGAAGCTGAAGCTTATGAGCTGTGCAACAACTATGCATATAAGAAAGGGTTTAGTATTCGTAAAGGGCACCTTCGAAAAGATGCGCAGAATAATCCCAGGCAGAGAGAGTTTTTGTGTTCGAAAGAAGGGTTTCTGCGGGATGAGGACTTGTGTGAAGTGAAAAAGGTGAGGAGGTTGGAGACGAGGACGGGGTGCAAGGCTGCATTTCGGTTCAATGTGGAAAATGGTGTGTGGAAGATCTCTTACGCTAATCCGCATCATAATCATGAGTTTGCGAGTCCTGAAGAAAGAAAATTTCTGAGATCGGGTAGAAATATACCGAGTGTTGGTGCAGCTATCGTTGGTTATAGGGTTGATGAGAGTAGCACACCAGTGAAAGCAGACCCAATCTTGGAAAAGGAATGTGGCAGTGCTGACAGTGTTGGGTTCACTCATAAAGATTATCATAACTCAGAAAGTCTCGTTCTTGGCAAAACAGGTGGTGAGCATCTATATAGCAAACTGAGAATAGTTCAGGGAAACAAGAGACGTCGTCAACATGTTTGGAACAGCAATAAGGAGCACGGTCCTCTCACCATTTCTGAAACCTGGGATCACGTTAAGGAAGTTGGTTTAAGAGGACTGACGAGCAAGAGGCATATGAAGATAGTGTTGAGGTGGATGAAGGAGAGGCAGAAGCTTAGACAAATATGCAACCATGTAGGGCCTAATAAGCAGTTTCTGTATACGACTTGGTTCACAAAACCCAACACCAAGCAGCAGCCAAAACCAGTAAACGGTTCTCCACAACCCAAGTTCCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE PEARLI-4 SWIM

Protein Analysis

292

Amino Acids

33.64

Weight (kDa)

9.43

Isoelectric Point (pI)

45.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 34 - 116 3.8e-16 FAR1 DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000165)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38180
fragaria_vesca FvH4_1g09751 FvH4_1g09751 FvH4_1g09751 FvH4_1g12531 FvH4_1g19193 FvH4_2g07051 FvH4_2g17131 FvH4_2g17131 FvH4_2g28082 FvH4_5g08845 FvH4_5g26361 FvH4_5g26361 FvH4_5g26361 FvH4_5g26361 FvH4_5g39269 FvH4_6g36651 FvH4_6g38410 FvH4_7g04941 FvH4_7g04941
malus_domestica MD00G1156400.v1.1 MD02G1139600.v1.1 MD05G1144600.v1.1 MD06G1002400.v1.1 MD10G1143900.v1.1 MD15G1227300.v1.1 MD15G1252700.v1.1
prunus_persica Prupe.2G147900_v2.0.a1 Prupe.3G257900_v2.0.a1 Prupe.5G003600_v2.0.a1 Prupe.5G053800_v2.0.a1 Prupe.6G011300_v2.0.a1 Prupe.7G161400_v2.0.a1 Prupe.7G161500_v2.0.a1 Prupe.7G188000_v2.0.a1 Prupe.8G182700_v2.0.a1 Prupe.8G182700_v2.0.a1 Prupe.8G182700_v2.0.a1
pyrus_communis pycom02g11030 pycom05g13970 pycom06g00250 pycom10g12390 pycom10g12400 pycom15g20220 pycom15g22260 pycom17g05620
rosa_chinensis RchiOBHm_Chr2g0096701 RchiOBHm_Chr2g0100471 RchiOBHm_Chr2g0100481 RchiOBHm_Chr6g0281561 RchiOBHm_Chr7g0187081 RchiOBHm_Chr7g0217201 RchiOBHm_Chr7g0228321
rosa_laevigata RLG00000001574 RLG00000002527 RLG00000008169 RLG00000011104 RLG00000012963 RLG00000013720 RLG00000014615 RLG00000016663 RLG00000018214 RLG00000018621 RLG00000018622 RLG00000022494
rosa_multiflora Rmu_co8187762.1_g000001 Rmu_co8276569.1_g000001 Rmu_sc0000528.1_g000025 Rmu_sc0001095.1_g000001 Rmu_sc0001095.1_g000002 Rmu_sc0001167.1_g000007 Rmu_sc0001758.1_g000042 Rmu_sc0002147.1_g000004 Rmu_sc0002489.1_g000048 Rmu_sc0002564.1_g000015 Rmu_sc0002902.1_g000037 Rmu_sc0003565.1_g000022 Rmu_sc0003576.1_g000008 Rmu_sc0003720.1_g000022 Rmu_sc0003720.1_g000023 Rmu_sc0003862.1_g000023 Rmu_sc0006475.1_g000009 Rmu_sc0006475.1_g000010 Rmu_sc0006735.1_g000001 Rmu_sc0007586.1_g000004 Rmu_sc0009650.1_g000010 Rmu_sc0010963.1_g000005 Rmu_sc0012557.1_g000002 Rmu_sc0020744.1_g000001 Rmu_sc0020745.1_g000002 Rmu_sc0022201.1_g000001 Rmu_sc0022408.1_g000011 Rmu_sc0023414.1_g000001 Rmu_sc0025101.1_g000001 Rmu_ssc0000211.1_g000015 Rmu_ssc0000240.1_g000012
rosa_roxburghii Rroxscaffold_1G00013940 Rroxscaffold_1G00018420 Rroxscaffold_2G00142210 Rroxscaffold_2G00142230 Rroxscaffold_2G00145400 Rroxscaffold_3G00240120 Rroxscaffold_3G00240150 Rroxscaffold_3G00242500 Rroxscaffold_5G00346610 Rroxscaffold_5G00356000 Rroxscaffold_7G00187000 Rroxscaffold_7G00212120
rosa_rugosa Rorug01G0260900 Rorug01G0446900 Rorug02G0059800 Rorug02G0059900 Rorug02G0088400 Rorug02G0088500 Rorug02G0522300 Rorug03G0234100 Rorug03G0234100 Rorug03G0242400 Rorug04G0109900 Rorug04G0326100 Rorug05G0275900 Rorug06G0141600 Rorug06G0141700 Rorug06G0141700 Rorug07G0167200 Rorug07G0247000 Rorug07G0247000 Rorug07G0247100.1
rosa_samantha Rh1AG046800 Rh1AG111600 Rh1AG242600 Rh1CG226400 Rh1DG086400 Rh2AG107200 Rh2AG138100 Rh2AG528600 Rh2BG109600 Rh2BG141200 Rh2BG273400 Rh2BG357800 Rh2BG640200 Rh2CG111400 Rh2CG143400 Rh2CG161100 Rh2CG251300 Rh2DG111000 Rh2DG142900 Rh2DG651100 Rh3BG318000 Rh4AG167800 Rh4AG253700 Rh5AG282900 Rh6AG254100 Rh6BG257100 Rh6CG256400 Rh6DG248200 Rh7AG306100 Rh7BG297500 Rh7CG325200 Rh7CG420200 Rh7DG306000
rosa_wichuraiana Rw2G008310 Rw2G010790 Rw2G010800 Rw2G013840 Rw2G022430 Rw3G020550 Rw3G024980 Rw3G025930 Rw5G026810 Rw5G035870 Rw6G022060 Rw6G030700 Rw7G007420 Rw7G026010 Rw7G033340 Rw7G037700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 607
Acc16I TGCGCA 1 cut(s) 159
AccB1I GGYRCC 1 cut(s) 141
AccI GTMKAC 1 cut(s) 800
AciI CCGC 2 cut(s) 211, 329
AclWI GGATC 1 cut(s) 675
AcsI RAATTY 1 cut(s) 368
AcuI CTGAAG 2 cut(s) 102, 378
AcyI GRCGYC 1 cut(s) 604
AfiI CCNNNNNNNGG 3 cut(s) 401, 466, 851
AflIII ACRYGT 1 cut(s) 613
AgsI TTSAA 1 cut(s) 289
AjnI CCWGG 2 cut(s) 170, 662
AleI CACNNNNGTG 1 cut(s) 446
AluBI AGCT 6 cut(s) 49, 80, 86, 94, 410, 754
AluI AGCT 6 cut(s) 49, 80, 86, 94, 410, 754
Alw21I GWGCWC 1 cut(s) 639
Alw26I GTCTC 3 cut(s) 248, 539, 595
AlwI GGATC 1 cut(s) 675
AlwNI CAGNNNCTG 1 cut(s) 796
AoxI GGCC 1 cut(s) 779
ApeKI GCWGC 4 cut(s) 275, 407, 832, 835
ApoI RAATTY 1 cut(s) 368
Asp700I GAANNNNTTC 1 cut(s) 204
AspLEI GCGC 1 cut(s) 160
AspS9I GGNCC 2 cut(s) 641, 779
AsuHPI GGTGA 4 cut(s) 26, 253, 569, 640
AsuII TTCGAA 2 cut(s) 148, 194
AvaII GGWCC 1 cut(s) 641
BaeGI GKGCMC 1 cut(s) 144
BanI GGYRCC 1 cut(s) 141
BarI GAAGNNNNNNTAC 2 cut(s) 302, 334
Bbv12I GWGCWC 1 cut(s) 639
BbvI GCAGC 4 cut(s) 262, 419, 844, 847
BccI CCATC 1 cut(s) 55
BciT130I CCWGG 2 cut(s) 172, 664
BcoDI GTCTC 3 cut(s) 248, 539, 595
BfaI CTAG 2 cut(s) 56, 72
BglII AGATCT 1 cut(s) 312
BisI GCNGC 4 cut(s) 276, 408, 833, 836
BlsI GCNGC 4 cut(s) 277, 409, 834, 837
Bme1390I CCNGG 2 cut(s) 172, 664
Bme18I GGWCC 1 cut(s) 641
BmgT120I GGNCC 2 cut(s) 641, 779
BmiI GGNNCC 1 cut(s) 143
BmrFI CCNGG 2 cut(s) 172, 664
BmsI GCATC 3 cut(s) 145, 340, 571
Bpu14I TTCGAA 2 cut(s) 148, 194
BsaHI GRCGYC 1 cut(s) 604
BsaJI CCNNGG 2 cut(s) 170, 663
Bsc4I CCNNNNNNNGG 3 cut(s) 401, 466, 851
Bse1I ACTGG 2 cut(s) 446, 845
BseBI CCWGG 2 cut(s) 172, 664
BseDI CCNNGG 2 cut(s) 170, 663
BseGI GGATG 3 cut(s) 66, 220, 741
BseLI CCNNNNNNNGG 3 cut(s) 401, 466, 851
BseMII CTCAG 3 cut(s) 365, 540, 569
BseNI ACTGG 2 cut(s) 446, 845
BseRI GAGGAG 2 cut(s) 59, 259
BseSI GKGCMC 1 cut(s) 144
BseXI GCAGC 4 cut(s) 262, 419, 844, 847
BsgI GTGCAG 1 cut(s) 426
BshFI GGCC 1 cut(s) 781
BshNI GGYRCC 1 cut(s) 141
BsiHKAI GWGCWC 1 cut(s) 639
BslI CCNNNNNNNGG 3 cut(s) 401, 466, 851
BsmAI GTCTC 3 cut(s) 248, 539, 595
BsmBI CGTCTC 2 cut(s) 248, 595
BsnI GGCC 1 cut(s) 781
Bsp119I TTCGAA 2 cut(s) 148, 194
Bsp1286I GDGCHC 2 cut(s) 144, 639
Bsp143I GATC 3 cut(s) 312, 377, 667
BspACI CCGC 2 cut(s) 211, 329
BspANI GGCC 1 cut(s) 781
BspCNI CTCAG 3 cut(s) 366, 539, 570
BspHI TCATGA 1 cut(s) 340
BspLI GGNNCC 1 cut(s) 143
BspPI GGATC 1 cut(s) 675
BspT104I TTCGAA 2 cut(s) 148, 194
BspT107I GGYRCC 1 cut(s) 141
BsrI ACTGG 2 cut(s) 446, 845
BssECI CCNNGG 2 cut(s) 170, 663
BssMI GATC 3 cut(s) 312, 377, 667
BssNAI GTATAC 1 cut(s) 801
BssNI GRCGYC 1 cut(s) 604
Bst1107I GTATAC 1 cut(s) 801
Bst2UI CCWGG 2 cut(s) 172, 664
Bst4CI ACNGT 3 cut(s) 494, 641, 854
BstACI GRCGYC 1 cut(s) 604
BstBI TTCGAA 2 cut(s) 148, 194
BstDEI CTNAG 4 cut(s) 374, 526, 578, 755
BstF5I GGATG 3 cut(s) 66, 220, 741
BstHHI GCGC 1 cut(s) 160
BstKTI GATC 3 cut(s) 315, 380, 670
BstMAI GTCTC 3 cut(s) 248, 539, 595
BstMBI GATC 3 cut(s) 312, 377, 667
BstMWI GCNNNNNNNGC 1 cut(s) 787
BstNI CCWGG 2 cut(s) 172, 664
BstNSI RCATGY 1 cut(s) 617
BstSCI CCNGG 2 cut(s) 170, 662
BstSLI GKGCMC 1 cut(s) 144
BstV1I GCAGC 4 cut(s) 262, 419, 844, 847
BstX2I RGATCY 1 cut(s) 312
BstYI RGATCY 1 cut(s) 312
BstZ17I GTATAC 1 cut(s) 801
BsuRI GGCC 1 cut(s) 781
BtsCI GGATG 3 cut(s) 66, 220, 741
BtsI GCAGTG 1 cut(s) 490
BtsIMutI CAGTG 3 cut(s) 453, 490, 499
CaiI CAGNNNCTG 1 cut(s) 796
CciI TCATGA 1 cut(s) 340
CfoI GCGC 1 cut(s) 160
Cfr13I GGNCC 2 cut(s) 641, 779
CspCI CAANNNNNGTGG 2 cut(s) 535, 570
CviAII CATG 3 cut(s) 341, 614, 773
CviJI RGCY 9 cut(s) 49, 80, 86, 94, 275, 410, 754, 781, 838
CviKI_1 RGCY 9 cut(s) 49, 80, 86, 94, 275, 410, 754, 781, 838
DdeI CTNAG 4 cut(s) 374, 526, 578, 755
DpnI GATC 3 cut(s) 314, 379, 669
DpnII GATC 3 cut(s) 312, 377, 667
Eco32I GATATC 1 cut(s) 26
Eco47I GGWCC 1 cut(s) 641
Eco57I CTGAAG 2 cut(s) 102, 378
EcoO109I RGGNCCY 1 cut(s) 779
EcoRII CCWGG 2 cut(s) 170, 662
EcoRV GATATC 1 cut(s) 26
EcoT22I ATGCAT 1 cut(s) 112
Esp3I CGTCTC 2 cut(s) 248, 595
FaeI CATG 3 cut(s) 344, 617, 776
FalI AAGNNNNNCTT 2 cut(s) 129, 161
FatI CATG 3 cut(s) 340, 613, 772
FauI CCCGC 1 cut(s) 204
FauNDI CATATG 1 cut(s) 714
FblI GTMKAC 1 cut(s) 800
Fnu4HI GCNGC 4 cut(s) 276, 408, 833, 836
FokI GGATG 3 cut(s) 73, 227, 748
Fsp4HI GCNGC 4 cut(s) 276, 408, 833, 836
FspBI CTAG 2 cut(s) 56, 72
FspI TGCGCA 1 cut(s) 159
GlaI GCGC 1 cut(s) 159
GluI GCNGC 4 cut(s) 276, 408, 833, 836
HaeIII GGCC 1 cut(s) 781
HhaI GCGC 1 cut(s) 160
Hin1I GRCGYC 1 cut(s) 604
Hin1II CATG 3 cut(s) 344, 617, 776
Hin6I GCGC 1 cut(s) 158
HinP1I GCGC 1 cut(s) 158
HincII GTYRAC 1 cut(s) 611
HindII GTYRAC 1 cut(s) 611
HindIII AAGCTT 2 cut(s) 84, 752
HinfI GANTC 1 cut(s) 352
HphI GGTGA 4 cut(s) 26, 253, 569, 640
Hpy166II GTNNAC 5 cut(s) 504, 611, 801, 813, 850
Hpy188I TCNGA 3 cut(s) 375, 529, 658
Hpy188III TCNNGA 2 cut(s) 341, 356
Hpy8I GTNNAC 5 cut(s) 504, 611, 801, 813, 850
Hpy99I CGWCG 1 cut(s) 609
HpyAV CCTTC 3 cut(s) 155, 194, 733
HpyCH4III ACNGT 3 cut(s) 494, 641, 854
HpyCH4IV ACGT 2 cut(s) 604, 672
HpyCH4V TGCA 6 cut(s) 99, 110, 270, 278, 407, 768
HpyF10VI GCNNNNNNNGC 1 cut(s) 787
HpyF3I CTNAG 4 cut(s) 374, 526, 578, 755
HpySE526I ACGT 2 cut(s) 604, 672
Hsp92I GRCGYC 1 cut(s) 604
Hsp92II CATG 3 cut(s) 344, 617, 776
HspAI GCGC 1 cut(s) 158
Kzo9I GATC 3 cut(s) 312, 377, 667
LmnI GCTCC 2 cut(s) 46, 634
LpnPI CCDG 9 cut(s) 157, 184, 369, 459, 537, 575, 649, 676, 858
Lsp1109I GCAGC 4 cut(s) 262, 419, 844, 847
LweI GCATC 3 cut(s) 145, 340, 571
MaeI CTAG 2 cut(s) 56, 72
MaeII ACGT 2 cut(s) 604, 672
MalI GATC 3 cut(s) 314, 379, 669
MboI GATC 3 cut(s) 312, 377, 667
MboII GAAGA 3 cut(s) 322, 371, 730
MflI RGATCY 1 cut(s) 312
MhlI GDGCHC 2 cut(s) 144, 639
MluCI AATT 1 cut(s) 368
MlyI GAGTC 1 cut(s) 361
MmeI TCCRAC 1 cut(s) 231
Mph1103I ATGCAT 1 cut(s) 112
MroXI GAANNNNTTC 1 cut(s) 204
MseI TTAA 2 cut(s) 675, 689
MslI CAYNNNNRTG 2 cut(s) 339, 446
MspR9I CCNGG 2 cut(s) 172, 664
MvaI CCWGG 2 cut(s) 172, 664
MwoI GCNNNNNNNGC 1 cut(s) 787
NdeI CATATG 1 cut(s) 714
NdeII GATC 3 cut(s) 312, 377, 667
NlaIII CATG 3 cut(s) 344, 617, 776
NlaIV GGNNCC 1 cut(s) 143
NsbI TGCGCA 1 cut(s) 159
NsiI ATGCAT 1 cut(s) 112
NspI RCATGY 1 cut(s) 617
NspV TTCGAA 2 cut(s) 148, 194
OliI CACNNNNGTG 1 cut(s) 446
PagI TCATGA 1 cut(s) 340
PciI ACATGT 1 cut(s) 613
PdmI GAANNNNTTC 1 cut(s) 204
PflFI GACNNNGTC 1 cut(s) 606
PkrI GCNGC 4 cut(s) 277, 409, 834, 837
PleI GAGTC 1 cut(s) 360
PpsI GAGTC 1 cut(s) 360
PscI ACATGT 1 cut(s) 613
Psp6I CCWGG 2 cut(s) 170, 662
PspGI CCWGG 2 cut(s) 170, 662
PspN4I GGNNCC 1 cut(s) 143
PspPI GGNCC 2 cut(s) 641, 779
PstNI CAGNNNCTG 1 cut(s) 796
PsuI RGATCY 1 cut(s) 312
PsyI GACNNNGTC 1 cut(s) 606
RseI CAYNNNNRTG 2 cut(s) 339, 446
SaqAI TTAA 2 cut(s) 675, 689
SatI GCNGC 4 cut(s) 276, 408, 833, 836
Sau3AI GATC 3 cut(s) 312, 377, 667
Sau96I GGNCC 2 cut(s) 641, 779
SchI GAGTC 1 cut(s) 361
ScrFI CCNGG 2 cut(s) 172, 664
SduI GDGCHC 2 cut(s) 144, 639
SfaNI GCATC 3 cut(s) 145, 340, 571
SfuI TTCGAA 2 cut(s) 148, 194
SinI GGWCC 1 cut(s) 641
SmiMI CAYNNNNRTG 2 cut(s) 339, 446
Sse9I AATT 1 cut(s) 368
SsiI CCGC 2 cut(s) 211, 329
SspMI CTAG 2 cut(s) 56, 72
StyD4I CCNGG 2 cut(s) 170, 662
TaaI ACNGT 3 cut(s) 494, 641, 854
TaiI ACGT 2 cut(s) 607, 675
TaqI TCGA 2 cut(s) 148, 194
TasI AATT 1 cut(s) 368
Tru1I TTAA 2 cut(s) 675, 689
Tru9I TTAA 2 cut(s) 675, 689
TscAI CASTG 3 cut(s) 453, 490, 499
TseI GCWGC 4 cut(s) 275, 407, 832, 835
TspDTI ATGAA 2 cut(s) 731, 752
TspRI CASTG 3 cut(s) 453, 490, 499
Tth111I GACNNNGTC 1 cut(s) 606
VpaK11BI GGWCC 1 cut(s) 641
XapI RAATTY 1 cut(s) 368
XceI RCATGY 1 cut(s) 617
XmiI GTMKAC 1 cut(s) 800
XmnI GAANNNNTTC 1 cut(s) 204
XspI CTAG 2 cut(s) 56, 72
ZraI GACGTC 1 cut(s) 605
Zsp2I ATGCAT 1 cut(s) 112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.