Rh1CG226400

Protein FAR1-RELATED SEQUENCE 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000165
Physical Location & Seq
Reverse (-)
47946230 .. 47949999
3770 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG226400.1

Sequence Viewer

Length: 819 bp
ATGCTTAAATTCACCAAAATAAACACAGCTCGACCTGTTAGTTCATTCTCATCAGTAAGAGTCCAATTGGCTTGTAAAGGAATGGAGGAAACTATTGGAGACGAAGAAGAACTCAAAGTGGGAATGCAAGTACACTCTGATGATGAGGCTTACAATTTATATAACACCTATGCTTTGAGGAAGGGTTTCAGTGTTCGTAAAGGACATATTCGAAGAGATGCATCAAATAAAATCCGCCAACGAGAAATTCTGTGTTCAAAGGAGGGGTTTACAAGAGACGAGGATGTATGTCAACCAAACAAACACAGGAAGTTAGAAACAAGAGTTGGTTGTACTGAAATTGTCAAGGATCTGTTAAAAGAGGTAATGAAGCGCCTTGAAAAAGATAAGGACACTATCTACGTGTTGGAAAATTTGAAGAAACTTGGTGACCAATCTGACTCTGGAATTCCTAGTAATGAGATACTAGTTTTGAATCCACCAAGTGCAAAGACTAAAGGAATGAAAAATGCTAGAATCAAAGACGTGAGGGAGATAAACCAACGGAAGAAGAGAACAAAAGAACAAGAAAGTCAAGAAAACAATGATCCAAATGCTCCAAATCATGTGTCTACATCTAATCATCAGTTTGGTGTACTTAACACCTCATTTTATAATCAGGGAATTTTAAGTTGGCCTTTTGGACATCCCAATCCATGTTTTAGTTATGGTCAGATACCTTTCTCAAACCAGAATTCAACTTACTCAACTACAAGTCTGAATCTTGCACCAGCTACAACTCTAACTACAAATACTACACTCAGACAACAACCTCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

272

Amino Acids

30.92

Weight (kDa)

9.26

Isoelectric Point (pI)

40.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 53 - 115 3.1e-11 FAR1 DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000165)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38180
fragaria_vesca FvH4_1g09751 FvH4_1g09751 FvH4_1g09751 FvH4_1g12531 FvH4_1g19193 FvH4_2g07051 FvH4_2g17131 FvH4_2g17131 FvH4_2g28082 FvH4_5g08845 FvH4_5g26361 FvH4_5g26361 FvH4_5g26361 FvH4_5g26361 FvH4_5g39269 FvH4_6g36651 FvH4_6g38410 FvH4_7g04941 FvH4_7g04941
malus_domestica MD00G1156400.v1.1 MD02G1139600.v1.1 MD05G1144600.v1.1 MD06G1002400.v1.1 MD10G1143900.v1.1 MD15G1227300.v1.1 MD15G1252700.v1.1
prunus_persica Prupe.2G147900_v2.0.a1 Prupe.3G257900_v2.0.a1 Prupe.5G003600_v2.0.a1 Prupe.5G053800_v2.0.a1 Prupe.6G011300_v2.0.a1 Prupe.7G161400_v2.0.a1 Prupe.7G161500_v2.0.a1 Prupe.7G188000_v2.0.a1 Prupe.8G182700_v2.0.a1 Prupe.8G182700_v2.0.a1 Prupe.8G182700_v2.0.a1
pyrus_communis pycom02g11030 pycom05g13970 pycom06g00250 pycom10g12390 pycom10g12400 pycom15g20220 pycom15g22260 pycom17g05620
rosa_chinensis RchiOBHm_Chr2g0096701 RchiOBHm_Chr2g0100471 RchiOBHm_Chr2g0100481 RchiOBHm_Chr6g0281561 RchiOBHm_Chr7g0187081 RchiOBHm_Chr7g0217201 RchiOBHm_Chr7g0228321
rosa_laevigata RLG00000001574 RLG00000002527 RLG00000008169 RLG00000011104 RLG00000012963 RLG00000013720 RLG00000014615 RLG00000016663 RLG00000018214 RLG00000018621 RLG00000018622 RLG00000022494
rosa_multiflora Rmu_co8187762.1_g000001 Rmu_co8276569.1_g000001 Rmu_sc0000528.1_g000025 Rmu_sc0001095.1_g000001 Rmu_sc0001095.1_g000002 Rmu_sc0001167.1_g000007 Rmu_sc0001758.1_g000042 Rmu_sc0002147.1_g000004 Rmu_sc0002489.1_g000048 Rmu_sc0002564.1_g000015 Rmu_sc0002902.1_g000037 Rmu_sc0003565.1_g000022 Rmu_sc0003576.1_g000008 Rmu_sc0003720.1_g000022 Rmu_sc0003720.1_g000023 Rmu_sc0003862.1_g000023 Rmu_sc0006475.1_g000009 Rmu_sc0006475.1_g000010 Rmu_sc0006735.1_g000001 Rmu_sc0007586.1_g000004 Rmu_sc0009650.1_g000010 Rmu_sc0010963.1_g000005 Rmu_sc0012557.1_g000002 Rmu_sc0020744.1_g000001 Rmu_sc0020745.1_g000002 Rmu_sc0022201.1_g000001 Rmu_sc0022408.1_g000011 Rmu_sc0023414.1_g000001 Rmu_sc0025101.1_g000001 Rmu_ssc0000211.1_g000015 Rmu_ssc0000240.1_g000012
rosa_roxburghii Rroxscaffold_1G00013940 Rroxscaffold_1G00018420 Rroxscaffold_2G00142210 Rroxscaffold_2G00142230 Rroxscaffold_2G00145400 Rroxscaffold_3G00240120 Rroxscaffold_3G00240150 Rroxscaffold_3G00242500 Rroxscaffold_5G00346610 Rroxscaffold_5G00356000 Rroxscaffold_7G00187000 Rroxscaffold_7G00212120
rosa_rugosa Rorug01G0260900 Rorug01G0446900 Rorug02G0059800 Rorug02G0059900 Rorug02G0088400 Rorug02G0088500 Rorug02G0522300 Rorug03G0234100 Rorug03G0234100 Rorug03G0242400 Rorug04G0109900 Rorug04G0326100 Rorug05G0275900 Rorug06G0141600 Rorug06G0141700 Rorug06G0141700 Rorug07G0167200 Rorug07G0247000 Rorug07G0247000 Rorug07G0247100.1
rosa_samantha Rh1AG046800 Rh1AG111600 Rh1AG242600 Rh1CG226400 Rh1DG086400 Rh2AG107200 Rh2AG138100 Rh2AG528600 Rh2BG109600 Rh2BG141200 Rh2BG273400 Rh2BG357800 Rh2BG640200 Rh2CG111400 Rh2CG143400 Rh2CG161100 Rh2CG251300 Rh2DG111000 Rh2DG142900 Rh2DG651100 Rh3BG318000 Rh4AG167800 Rh4AG253700 Rh5AG282900 Rh6AG254100 Rh6BG257100 Rh6CG256400 Rh6DG248200 Rh7AG306100 Rh7BG297500 Rh7CG325200 Rh7CG420200 Rh7DG306000
rosa_wichuraiana Rw2G008310 Rw2G010790 Rw2G010800 Rw2G013840 Rw2G022430 Rw3G020550 Rw3G024980 Rw3G025930 Rw5G026810 Rw5G035870 Rw6G022060 Rw6G030700 Rw7G007420 Rw7G026010 Rw7G033340 Rw7G037700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 654
AccI GTMKAC 1 cut(s) 611
AciI CCGC 1 cut(s) 235
AclWI GGATC 2 cut(s) 357, 581
AcsI RAATTY 6 cut(s) 8, 246, 412, 447, 663, 733
AdeI CACNNNGTG 1 cut(s) 485
AfaI GTAC 3 cut(s) 132, 334, 636
AflIII ACRYGT 1 cut(s) 402
AgsI TTSAA 5 cut(s) 258, 380, 418, 475, 738
AhlI ACTAGT 1 cut(s) 466
AjiI CACGTC 1 cut(s) 526
AjuI GAANNNNNNNTTGG 6 cut(s) 231, 263, 309, 341, 655, 687
AluBI AGCT 2 cut(s) 29, 773
AluI AGCT 2 cut(s) 29, 773
Alw26I GTCTC 2 cut(s) 93, 270
AlwI GGATC 2 cut(s) 357, 581
AoxI GGCC 1 cut(s) 674
ApoI RAATTY 6 cut(s) 8, 246, 412, 447, 663, 733
ArsI GACNNNNNNTTYG 2 cut(s) 593, 625
Asp700I GAANNNNTTC 1 cut(s) 185
AspLEI GCGC 1 cut(s) 375
AsuHPI GGTGA 2 cut(s) 4, 440
AsuII TTCGAA 1 cut(s) 211
BcoDI GTCTC 2 cut(s) 93, 270
BcuI ACTAGT 1 cut(s) 466
BfaI CTAG 3 cut(s) 453, 467, 513
BfoI RGCGCY 1 cut(s) 376
BmgBI CACGTC 1 cut(s) 526
BmsI GCATC 2 cut(s) 208, 230
Bpu14I TTCGAA 1 cut(s) 211
BsaAI YACGTR 1 cut(s) 403
BseGI GGATG 2 cut(s) 289, 685
BseMII CTCAG 1 cut(s) 814
BshFI GGCC 1 cut(s) 676
BsmAI GTCTC 2 cut(s) 93, 270
BsmBI CGTCTC 2 cut(s) 93, 270
BsmI GAATGC 1 cut(s) 129
BsnI GGCC 1 cut(s) 676
Bsp119I TTCGAA 1 cut(s) 211
Bsp143I GATC 2 cut(s) 349, 586
BspACI CCGC 1 cut(s) 235
BspANI GGCC 1 cut(s) 676
BspCNI CTCAG 1 cut(s) 813
BspPI GGATC 2 cut(s) 357, 581
BspT104I TTCGAA 1 cut(s) 211
BssMI GATC 2 cut(s) 349, 586
Bst6I CTCTTC 2 cut(s) 208, 545
BstBAI YACGTR 1 cut(s) 403
BstBI TTCGAA 1 cut(s) 211
BstDEI CTNAG 2 cut(s) 800, 813
BstEII GGTNACC 1 cut(s) 428
BstF5I GGATG 2 cut(s) 289, 685
BstH2I RGCGCY 1 cut(s) 376
BstHHI GCGC 1 cut(s) 375
BstKTI GATC 2 cut(s) 352, 589
BstMAI GTCTC 2 cut(s) 93, 270
BstMBI GATC 2 cut(s) 349, 586
BstPI GGTNACC 1 cut(s) 428
BstX2I RGATCY 1 cut(s) 349
BstYI RGATCY 1 cut(s) 349
BsuRI GGCC 1 cut(s) 676
BtrI CACGTC 1 cut(s) 526
BtsCI GGATG 2 cut(s) 289, 685
BtsIMutI CAGTG 1 cut(s) 196
CfoI GCGC 1 cut(s) 375
Csp6I GTAC 3 cut(s) 131, 333, 635
CviAII CATG 2 cut(s) 605, 696
CviJI RGCY 5 cut(s) 29, 71, 149, 676, 773
CviKI_1 RGCY 5 cut(s) 29, 71, 149, 676, 773
CviQI GTAC 3 cut(s) 131, 333, 635
DdeI CTNAG 2 cut(s) 800, 813
DpnI GATC 2 cut(s) 351, 588
DpnII GATC 2 cut(s) 349, 586
DraIII CACNNNGTG 1 cut(s) 485
Eam1104I CTCTTC 2 cut(s) 208, 545
EarI CTCTTC 2 cut(s) 208, 545
EciI GGCGGA 1 cut(s) 224
Eco91I GGTNACC 1 cut(s) 428
EcoO65I GGTNACC 1 cut(s) 428
EcoRI GAATTC 2 cut(s) 447, 733
EcoT22I ATGCAT 1 cut(s) 223
Esp3I CGTCTC 2 cut(s) 93, 270
FaeI CATG 2 cut(s) 608, 699
FaiI YATR 9 cut(s) 160, 162, 171, 207, 289, 606, 654, 697, 708
FalI AAGNNNNNCTT 2 cut(s) 661, 693
FatI CATG 2 cut(s) 604, 695
FblI GTMKAC 1 cut(s) 611
FokI GGATG 2 cut(s) 296, 672
FspBI CTAG 3 cut(s) 453, 467, 513
GlaI GCGC 1 cut(s) 374
HaeII RGCGCY 1 cut(s) 376
HaeIII GGCC 1 cut(s) 676
HhaI GCGC 1 cut(s) 375
Hin1II CATG 2 cut(s) 608, 699
Hin6I GCGC 1 cut(s) 373
HinP1I GCGC 1 cut(s) 373
HincII GTYRAC 1 cut(s) 293
HindII GTYRAC 1 cut(s) 293
HinfI GANTC 5 cut(s) 60, 440, 475, 516, 760
HphI GGTGA 2 cut(s) 4, 440
Hpy166II GTNNAC 5 cut(s) 133, 270, 293, 612, 635
Hpy188I TCNGA 5 cut(s) 139, 439, 714, 759, 803
Hpy188III TCNNGA 2 cut(s) 444, 575
Hpy8I GTNNAC 5 cut(s) 133, 270, 293, 612, 635
HpyAV CCTTC 1 cut(s) 175
HpyCH4IV ACGT 2 cut(s) 402, 525
HpyCH4V TGCA 4 cut(s) 127, 221, 488, 767
HpyF3I CTNAG 2 cut(s) 800, 813
HpySE526I ACGT 2 cut(s) 402, 525
Hsp92II CATG 2 cut(s) 608, 699
HspAI GCGC 1 cut(s) 373
Kzo9I GATC 2 cut(s) 349, 586
LmnI GCTCC 1 cut(s) 601
LpnPI CCDG 6 cut(s) 48, 292, 429, 644, 743, 783
LweI GCATC 2 cut(s) 208, 230
MaeI CTAG 3 cut(s) 453, 467, 513
MaeII ACGT 2 cut(s) 402, 525
MaeIII GTNAC 1 cut(s) 428
MalI GATC 2 cut(s) 351, 588
MboI GATC 2 cut(s) 349, 586
MboII GAAGA 6 cut(s) 116, 119, 225, 430, 559, 562
MfeI CAATTG 1 cut(s) 65
MflI RGATCY 1 cut(s) 349
MluCI AATT 9 cut(s) 8, 65, 154, 246, 339, 412, 447, 663, 733
MlyI GAGTC 2 cut(s) 69, 434
MmeI TCCRAC 1 cut(s) 387
MnlI CCTC 8 cut(s) 79, 139, 171, 256, 274, 355, 522, 655
Mph1103I ATGCAT 1 cut(s) 223
MroXI GAANNNNTTC 1 cut(s) 185
MseI TTAA 4 cut(s) 6, 356, 639, 668
MslI CAYNNNNRTG 1 cut(s) 138
MunI CAATTG 1 cut(s) 65
Mva1269I GAATGC 1 cut(s) 129
NdeII GATC 2 cut(s) 349, 586
NlaIII CATG 2 cut(s) 608, 699
NmuCI GTSAC 1 cut(s) 428
NsiI ATGCAT 1 cut(s) 223
NspV TTCGAA 1 cut(s) 211
PctI GAATGC 1 cut(s) 129
PdmI GAANNNNTTC 1 cut(s) 185
PfeI GAWTC 3 cut(s) 475, 516, 760
PleI GAGTC 2 cut(s) 68, 434
PpsI GAGTC 2 cut(s) 68, 434
Ppu21I YACGTR 1 cut(s) 403
PsiI TTATAA 1 cut(s) 654
PspEI GGTNACC 1 cut(s) 428
PsuI RGATCY 1 cut(s) 349
RsaI GTAC 3 cut(s) 132, 334, 636
RsaNI GTAC 3 cut(s) 131, 333, 635
RseI CAYNNNNRTG 1 cut(s) 138
SaqAI TTAA 4 cut(s) 6, 356, 639, 668
Sau3AI GATC 2 cut(s) 349, 586
SchI GAGTC 2 cut(s) 69, 434
SfaNI GCATC 2 cut(s) 208, 230
SfuI TTCGAA 1 cut(s) 211
SmiMI CAYNNNNRTG 1 cut(s) 138
SpeI ACTAGT 1 cut(s) 466
Sse9I AATT 9 cut(s) 8, 65, 154, 246, 339, 412, 447, 663, 733
SsiI CCGC 1 cut(s) 235
SspMI CTAG 3 cut(s) 453, 467, 513
TaiI ACGT 2 cut(s) 405, 528
TaqI TCGA 2 cut(s) 31, 211
TasI AATT 9 cut(s) 8, 65, 154, 246, 339, 412, 447, 663, 733
TatI WGTACW 3 cut(s) 130, 332, 634
TfiI GAWTC 3 cut(s) 475, 516, 760
Tru1I TTAA 4 cut(s) 6, 356, 639, 668
Tru9I TTAA 4 cut(s) 6, 356, 639, 668
TscAI CASTG 1 cut(s) 196
TseFI GTSAC 1 cut(s) 428
Tsp45I GTSAC 1 cut(s) 428
TspDTI ATGAA 3 cut(s) 33, 383, 518
TspGWI ACGGA 1 cut(s) 559
TspRI CASTG 1 cut(s) 196
XapI RAATTY 6 cut(s) 8, 246, 412, 447, 663, 733
XcmI CCANNNNNNNNNTGG 1 cut(s) 440
XmiI GTMKAC 1 cut(s) 611
XmnI GAANNNNTTC 1 cut(s) 185
XspI CTAG 3 cut(s) 453, 467, 513
Zsp2I ATGCAT 1 cut(s) 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.